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The map label for this gene is patM [H]

Identifier: 209693641

GI number: 209693641

Start: 5554

End: 6225

Strand: Reverse

Name: patM [H]

Synonym: VSAL_I0007

Alternate gene names: 209693641

Gene position: 6225-5554 (Counterclockwise)

Preceding gene: 209693642

Following gene: 209693640

Centisome position: 0.19

GC content: 39.43

Gene sequence:

>672_bases
ATGGGATTTGATTTTGCGTATATGATTGAGCTCTTACCTATACTATTTAAATACTTAGGTACGACACTCGAAATGGCAGT
ATGGGGGTTATTCTTTGCCTTAGCGCTCGCGTTAGTGCTAGCTAACCTAAGAGTATTTAAAGTCCCTGTACTTGATCAAC
TCAGCCAACTTTACATCAGTTTCTTTCGAGGTACGCCTTTATTGGTGCAATTGTTTCTTCTTTATTATGGGCTTCCTCAA
GTCTTTCCTATTTTTGTTGGCTTAGATGCATTTAGTGCTGCTGTCATAGGCTTAACACTTCATTTTGCTGCCTATATGGC
AGAAAGTATTCGTGCCGCAATTATCGGTGTTGATCGCAGTCAAATGGAAGCCAGTCTTTCGATAGGAATGACAACCTCTC
AAGCGATGCGCCGAATCATTCTTCCTCAAGCCACACGAATTGCGTTACCTTCTTTAATGAATTATTTCATTGATATGATT
AAATCGACGTCATTAGCTTTTACACTCGGTGTTTCTGAGATTATGGCAAAAGCACAGATGGAAGCCTCTTCCAGTTTTAA
ATTTTTTGAGGCGTTTTTAGCGGTTGCTCTTATCTATTGGGGTGTCGTCATTATTCTTACTCAAGTCCAAACTTGGGCTG
AAAAAAAATTAAATAAGGCCTATGTACGATGA

Upstream 100 bases:

>100_bases
TATCATTACCCTTTAGTGGGTTTTGTGTTTATTGCTTATCTGATTTATATAGCTGACACTATCTACCGCACTTTTCTTTA
AACCAATAATAGAGAGCATC

Downstream 100 bases:

>100_bases
TAAAAATAACCAATCTACATAAAAGCTTTGGAACCACAGAAGTCCTCTCTGGCATCGATTTAACGATTAATAAAGGAGAG
ATAATTGCGATTATAGGATC

Product: amino-acid ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MGFDFAYMIELLPILFKYLGTTLEMAVWGLFFALALALVLANLRVFKVPVLDQLSQLYISFFRGTPLLVQLFLLYYGLPQ
VFPIFVGLDAFSAAVIGLTLHFAAYMAESIRAAIIGVDRSQMEASLSIGMTTSQAMRRIILPQATRIALPSLMNYFIDMI
KSTSLAFTLGVSEIMAKAQMEASSSFKFFEAFLAVALIYWGVVIILTQVQTWAEKKLNKAYVR

Sequences:

>Translated_223_residues
MGFDFAYMIELLPILFKYLGTTLEMAVWGLFFALALALVLANLRVFKVPVLDQLSQLYISFFRGTPLLVQLFLLYYGLPQ
VFPIFVGLDAFSAAVIGLTLHFAAYMAESIRAAIIGVDRSQMEASLSIGMTTSQAMRRIILPQATRIALPSLMNYFIDMI
KSTSLAFTLGVSEIMAKAQMEASSSFKFFEAFLAVALIYWGVVIILTQVQTWAEKKLNKAYVR
>Mature_222_residues
GFDFAYMIELLPILFKYLGTTLEMAVWGLFFALALALVLANLRVFKVPVLDQLSQLYISFFRGTPLLVQLFLLYYGLPQV
FPIFVGLDAFSAAVIGLTLHFAAYMAESIRAAIIGVDRSQMEASLSIGMTTSQAMRRIILPQATRIALPSLMNYFIDMIK
STSLAFTLGVSEIMAKAQMEASSSFKFFEAFLAVALIYWGVVIILTQVQTWAEKKLNKAYVR

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=212, Percent_Identity=47.1698113207547, Blast_Score=190, Evalue=7e-50,
Organism=Escherichia coli, GI1787030, Length=218, Percent_Identity=31.1926605504587, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787086, Length=217, Percent_Identity=35.9447004608295, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1786874, Length=185, Percent_Identity=31.8918918918919, Blast_Score=94, Evalue=5e-21,
Organism=Escherichia coli, GI1788645, Length=228, Percent_Identity=34.6491228070175, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI87082239, Length=205, Percent_Identity=30.7317073170732, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788646, Length=186, Percent_Identity=27.9569892473118, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1786873, Length=182, Percent_Identity=30.2197802197802, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1787087, Length=222, Percent_Identity=26.5765765765766, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI48994930, Length=85, Percent_Identity=32.9411764705882, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24931; Mature: 24800

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFDFAYMIELLPILFKYLGTTLEMAVWGLFFALALALVLANLRVFKVPVLDQLSQLYIS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
FFRGTPLLVQLFLLYYGLPQVFPIFVGLDAFSAAVIGLTLHFAAYMAESIRAAIIGVDRS
HHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
QMEASLSIGMTTSQAMRRIILPQATRIALPSLMNYFIDMIKSTSLAFTLGVSEIMAKAQM
HHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EASSSFKFFEAFLAVALIYWGVVIILTQVQTWAEKKLNKAYVR
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GFDFAYMIELLPILFKYLGTTLEMAVWGLFFALALALVLANLRVFKVPVLDQLSQLYIS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
FFRGTPLLVQLFLLYYGLPQVFPIFVGLDAFSAAVIGLTLHFAAYMAESIRAAIIGVDRS
HHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
QMEASLSIGMTTSQAMRRIILPQATRIALPSLMNYFIDMIKSTSLAFTLGVSEIMAKAQM
HHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EASSSFKFFEAFLAVALIYWGVVIILTQVQTWAEKKLNKAYVR
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA