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The map label for this gene is patH [H]

Identifier: 209693642

GI number: 209693642

Start: 6380

End: 7132

Strand: Reverse

Name: patH [H]

Synonym: VSAL_I0008

Alternate gene names: 209693642

Gene position: 7132-6380 (Counterclockwise)

Preceding gene: 209693647

Following gene: 209693641

Centisome position: 0.21

GC content: 39.31

Gene sequence:

>753_bases
ATGAAATGGACAAAACAAATTCTAACCGGTTTAGCACTCACTTTAGCGGCAACTCAATTTGCTCAAGCCGCCACTGAAGT
TAAAGTTGGGATGTCTGGTCGCTATTTCCCATTTACCTTTGTTAAGTTGGACAAACTGCAAGGGTTTGAAGTGGATTTAT
GGGATGAAATTGGTCGTCGTAATGACTATAAAATAGAATATGTAACAGCGAGCTTCTCTGGCTTATTTGGTTTATTAGAA
ACCGGTCGAATTGATACCATTTCAAATCAAATAACAAAAACAGAAGCACGTGAAGCAAAATATCTATTTGCTGACCCTTA
TGTTGTCGACGGCGCTCAAATTACCGTACGTAAAGGCAATGAAAGCATTAAAGGCATTGAAGACCTAGCTGGTAAAACCG
TTGCCGTAGATTTAGGGTCTAACTTTGAGAAACTGTTGCGAGATAACGACAAATCGAATCAAATTGATATTAAAACCTAC
GATACAGGCATTGAACACGATGTCGCTTTAGGCCGCTCGGATGCGTTTGTAATGGATCGTCTTTCTGCTGCACAATTGAT
TAAAAAATCAGGTTTGCCGCTACAACTTGCTGGCGAACCTTTTGAAACCATTGAAAACGCTTGGCCGTTTGTAAAAAATG
AAAAAGGCCAAAAACTTCAACAAGAAGTAAATAAAGCCCTGTCAGAAATGCGTACTGACGGTACCTTGGCTGAAATATCT
CAAAAATGGTTTGATGCAGACGTAACAAAATAA

Upstream 100 bases:

>100_bases
CTTAAATGATTATTTAGTTATTAAAAATAACCATAGGGTATTTAGAGCTCACTCGCAAAAAACGTATCATGCATATCACA
GTCGATAACGAGATATCATT

Downstream 100 bases:

>100_bases
CCGCAGTAATATAAAAGTGAGTATTCACTTCGATAAAAATGACACAAAACCCACTATCATTACCCTTTAGTGGGTTTTGT
GTTTATTGCTTATCTGATTT

Product: amino acid ABC transportersubstrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MKWTKQILTGLALTLAATQFAQAATEVKVGMSGRYFPFTFVKLDKLQGFEVDLWDEIGRRNDYKIEYVTASFSGLFGLLE
TGRIDTISNQITKTEAREAKYLFADPYVVDGAQITVRKGNESIKGIEDLAGKTVAVDLGSNFEKLLRDNDKSNQIDIKTY
DTGIEHDVALGRSDAFVMDRLSAAQLIKKSGLPLQLAGEPFETIENAWPFVKNEKGQKLQQEVNKALSEMRTDGTLAEIS
QKWFDADVTK

Sequences:

>Translated_250_residues
MKWTKQILTGLALTLAATQFAQAATEVKVGMSGRYFPFTFVKLDKLQGFEVDLWDEIGRRNDYKIEYVTASFSGLFGLLE
TGRIDTISNQITKTEAREAKYLFADPYVVDGAQITVRKGNESIKGIEDLAGKTVAVDLGSNFEKLLRDNDKSNQIDIKTY
DTGIEHDVALGRSDAFVMDRLSAAQLIKKSGLPLQLAGEPFETIENAWPFVKNEKGQKLQQEVNKALSEMRTDGTLAEIS
QKWFDADVTK
>Mature_250_residues
MKWTKQILTGLALTLAATQFAQAATEVKVGMSGRYFPFTFVKLDKLQGFEVDLWDEIGRRNDYKIEYVTASFSGLFGLLE
TGRIDTISNQITKTEAREAKYLFADPYVVDGAQITVRKGNESIKGIEDLAGKTVAVDLGSNFEKLLRDNDKSNQIDIKTY
DTGIEHDVALGRSDAFVMDRLSAAQLIKKSGLPLQLAGEPFETIENAWPFVKNEKGQKLQQEVNKALSEMRTDGTLAEIS
QKWFDADVTK

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid [H]

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788228, Length=226, Percent_Identity=40.2654867256637, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1787031, Length=237, Percent_Identity=31.6455696202532, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788649, Length=255, Percent_Identity=28.6274509803922, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788648, Length=238, Percent_Identity=27.7310924369748, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787085, Length=241, Percent_Identity=23.6514522821577, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787088, Length=244, Percent_Identity=24.5901639344262, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 27902; Mature: 27902

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWTKQILTGLALTLAATQFAQAATEVKVGMSGRYFPFTFVKLDKLQGFEVDLWDEIGRR
CCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEECCCCCCEEHHHHHCCC
NDYKIEYVTASFSGLFGLLETGRIDTISNQITKTEAREAKYLFADPYVVDGAQITVRKGN
CCCEEEEEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHCEEEEECCEEECCCEEEEECCC
ESIKGIEDLAGKTVAVDLGSNFEKLLRDNDKSNQIDIKTYDTGIEHDVALGRSDAFVMDR
CCCCCHHHHCCCEEEEECCCCHHHHHHCCCCCCEEEEEEECCCCCCHHHCCCCCHHHHHH
LSAAQLIKKSGLPLQLAGEPFETIENAWPFVKNEKGQKLQQEVNKALSEMRTDGTLAEIS
HHHHHHHHHCCCCEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
QKWFDADVTK
HHHHCCCCCC
>Mature Secondary Structure
MKWTKQILTGLALTLAATQFAQAATEVKVGMSGRYFPFTFVKLDKLQGFEVDLWDEIGRR
CCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEECCCCCCEEHHHHHCCC
NDYKIEYVTASFSGLFGLLETGRIDTISNQITKTEAREAKYLFADPYVVDGAQITVRKGN
CCCEEEEEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHCEEEEECCEEECCCEEEEECCC
ESIKGIEDLAGKTVAVDLGSNFEKLLRDNDKSNQIDIKTYDTGIEHDVALGRSDAFVMDR
CCCCCHHHHCCCEEEEECCCCHHHHHHCCCCCCEEEEEEECCCCCCHHHCCCCCHHHHHH
LSAAQLIKKSGLPLQLAGEPFETIENAWPFVKNEKGQKLQQEVNKALSEMRTDGTLAEIS
HHHHHHHHHCCCCEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
QKWFDADVTK
HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA