Click here to switch to the map view.

The map label for this gene is lysK [H]

Identifier: 203284557

GI number: 203284557

Start: 710088

End: 711686

Strand: Reverse

Name: lysK [H]

Synonym: BDU_662

Alternate gene names: 203284557

Gene position: 711686-710088 (Counterclockwise)

Preceding gene: 203284558

Following gene: 203284555

Centisome position: 76.39

GC content: 28.64

Gene sequence:

>1599_bases
ATGATAAAATTAAGTTTTAACAGAGGAAATATTATGAAAACAGCACACTGGGCAGATTTTTATGCAAAAAAAATAATAAC
AGAAAAAGGTGAAAAAGAACAATACACAGTTTCATCAGGAATTACTCCATCAGGAACCGTTCACATTGGAAATTTTAGAG
AAGTAATTTCTGTTGATCTAGTAGCAAGAGCACTTCAAGATCAGGGAAAACAAGTAAGATTTATTTACTCATGGGATAAC
TATGATGTATTTAGAAAAGTACCTAAGAACATGCCTGATCAAGAATTATTAACAACCTATTTAAGACAAGCAATAACAAG
AGTTCCTGACACAAAAACTAATAAGTCAAGTTATGCAAGAGCAAATGAAATAGAATTTGAACAACATTTGCCTACTGTAG
GCATTGAGCCAGAATTTATAGATCAAAGCTTAAAATATATGTCAAGTGATTATGCAAATCAAATAAAATTTGCACTAGAT
CATAAAGATGAAATAGCAACAATACTCAACAAATACAGAACCACACAACTTGCAGATGACTGGTATCCTATTAGCATTTT
TTGTACCAAATGTAATAGAGATACTACAACAATAAAAAATTATAATCATTGCTATTCTATTGAATACTATTGCGAATGTG
GCAACAAAGAATCGCTAGACTTAAGAAAAACATGGGCTTGCAAACTTCCATGGAGAATAGATTGGCCAATGCGATGGAAA
TATGAAAATGTTGATTTTGAACCTGCTGGCAAAGATCACCACAGCAGTGGAGGAAGTTTTGACACAGCAAAAGAAATCGT
AAAAATTTTTGGAGGAACTCCTCCCATAACATTTCAATACGATTTTATATCCATTAAAGGACATGGTGGAAAAATATCTT
CATCATCTGGAGACGTTGTTTCATTAAAAGATGTTCTTGAAATATATACACCTGAAGTTACAAGATTTTTATTTGCGTCA
ACAAAACCCAATACAGAGTTTTCAATATCATTTGACCTTGATGTAATAAAAATTTATGAAGATTACGATAAATTTGAAAG
GGTATATTATGGAATTGATGAAATTCAAGAAAAGAAAAAAGAAACTTTCAAAAGAATTTATGAACTCTCACAACCAAAAG
CACCAGACAAAGAAATTCCTTATCAAATTGGATTTAGACATTTAAGTGTAATATGTCAAATTTTTGAAGGAGACAAAGAT
AAAATCTTTACACTTTTAAATAATATAAAAGAACATCAAAAAACAAAACTAATAAATAAAATTGAATGTGCCATCAACTG
GATTAAAAAATTCGCACCTGAAGATTTTAAATTTTCACTCAGATCAACATTTGATAACATTGAAATACTTCAAGATAACA
ATAAACAAGCAGTAATACAATTACTAAAATTCTTAAAAGAAAATTTTAATAATATTACTGAAAAAGAAATTCAAGATGAA
ATTTATAATATTGCAAGAAAAAACAATATTGAACCACCATTATTCTTTAAGCAACTCTACAACATATTAATTACTAAAGA
CAAAGGACCAAAATTAGCAGGATTTATTAAAACAATTGGTATTGAAAAATTTGAAGAAATTGTAAAACATTACATTTAA

Upstream 100 bases:

>100_bases
AGAAAAAATTGGAATAAAAACGCTAAATTAATTAAAAATTTGATAAATTAATATGATAACATTTTTCAACACTTCTTCAT
ATTGAAATAACAAAAATAGG

Downstream 100 bases:

>100_bases
TTTTAACACAAAAATATTTGAAATTTATAATAAGAAGAGATCATATTTATCAATAATCTCTTCTTATTAACGTTTGCTCT
GTTTTTTATCTATCTATTTT

Product: lysyl-tRNA synthetase

Products: NA

Alternate protein names: Lysine--tRNA ligase; LysRS [H]

Number of amino acids: Translated: 532; Mature: 532

Protein sequence:

>532_residues
MIKLSFNRGNIMKTAHWADFYAKKIITEKGEKEQYTVSSGITPSGTVHIGNFREVISVDLVARALQDQGKQVRFIYSWDN
YDVFRKVPKNMPDQELLTTYLRQAITRVPDTKTNKSSYARANEIEFEQHLPTVGIEPEFIDQSLKYMSSDYANQIKFALD
HKDEIATILNKYRTTQLADDWYPISIFCTKCNRDTTTIKNYNHCYSIEYYCECGNKESLDLRKTWACKLPWRIDWPMRWK
YENVDFEPAGKDHHSSGGSFDTAKEIVKIFGGTPPITFQYDFISIKGHGGKISSSSGDVVSLKDVLEIYTPEVTRFLFAS
TKPNTEFSISFDLDVIKIYEDYDKFERVYYGIDEIQEKKKETFKRIYELSQPKAPDKEIPYQIGFRHLSVICQIFEGDKD
KIFTLLNNIKEHQKTKLINKIECAINWIKKFAPEDFKFSLRSTFDNIEILQDNNKQAVIQLLKFLKENFNNITEKEIQDE
IYNIARKNNIEPPLFFKQLYNILITKDKGPKLAGFIKTIGIEKFEEIVKHYI

Sequences:

>Translated_532_residues
MIKLSFNRGNIMKTAHWADFYAKKIITEKGEKEQYTVSSGITPSGTVHIGNFREVISVDLVARALQDQGKQVRFIYSWDN
YDVFRKVPKNMPDQELLTTYLRQAITRVPDTKTNKSSYARANEIEFEQHLPTVGIEPEFIDQSLKYMSSDYANQIKFALD
HKDEIATILNKYRTTQLADDWYPISIFCTKCNRDTTTIKNYNHCYSIEYYCECGNKESLDLRKTWACKLPWRIDWPMRWK
YENVDFEPAGKDHHSSGGSFDTAKEIVKIFGGTPPITFQYDFISIKGHGGKISSSSGDVVSLKDVLEIYTPEVTRFLFAS
TKPNTEFSISFDLDVIKIYEDYDKFERVYYGIDEIQEKKKETFKRIYELSQPKAPDKEIPYQIGFRHLSVICQIFEGDKD
KIFTLLNNIKEHQKTKLINKIECAINWIKKFAPEDFKFSLRSTFDNIEILQDNNKQAVIQLLKFLKENFNNITEKEIQDE
IYNIARKNNIEPPLFFKQLYNILITKDKGPKLAGFIKTIGIEKFEEIVKHYI
>Mature_532_residues
MIKLSFNRGNIMKTAHWADFYAKKIITEKGEKEQYTVSSGITPSGTVHIGNFREVISVDLVARALQDQGKQVRFIYSWDN
YDVFRKVPKNMPDQELLTTYLRQAITRVPDTKTNKSSYARANEIEFEQHLPTVGIEPEFIDQSLKYMSSDYANQIKFALD
HKDEIATILNKYRTTQLADDWYPISIFCTKCNRDTTTIKNYNHCYSIEYYCECGNKESLDLRKTWACKLPWRIDWPMRWK
YENVDFEPAGKDHHSSGGSFDTAKEIVKIFGGTPPITFQYDFISIKGHGGKISSSSGDVVSLKDVLEIYTPEVTRFLFAS
TKPNTEFSISFDLDVIKIYEDYDKFERVYYGIDEIQEKKKETFKRIYELSQPKAPDKEIPYQIGFRHLSVICQIFEGDKD
KIFTLLNNIKEHQKTKLINKIECAINWIKKFAPEDFKFSLRSTFDNIEILQDNNKQAVIQLLKFLKENFNNITEKEIQDE
IYNIARKNNIEPPLFFKQLYNILITKDKGPKLAGFIKTIGIEKFEEIVKHYI

Specific function: Unknown

COG id: COG1384

COG function: function code J; Lysyl-tRNA synthetase (class I)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008925
- InterPro:   IPR020751
- InterPro:   IPR001412
- InterPro:   IPR002904
- InterPro:   IPR020754
- InterPro:   IPR020756
- InterPro:   IPR014729 [H]

Pfam domain/function: PF01921 tRNA-synt_1f [H]

EC number: =6.1.1.6 [H]

Molecular weight: Translated: 62194; Mature: 62194

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKLSFNRGNIMKTAHWADFYAKKIITEKGEKEQYTVSSGITPSGTVHIGNFREVISVDL
CEEEEECCCCCEEEHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEECCHHHHHHHHH
VARALQDQGKQVRFIYSWDNYDVFRKVPKNMPDQELLTTYLRQAITRVPDTKTNKSSYAR
HHHHHHCCCCEEEEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCH
ANEIEFEQHLPTVGIEPEFIDQSLKYMSSDYANQIKFALDHKDEIATILNKYRTTQLADD
HCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHCCCC
WYPISIFCTKCNRDTTTIKNYNHCYSIEYYCECGNKESLDLRKTWACKLPWRIDWPMRWK
CEEEEEEEEECCCCCCEECCCCCEEEEEEEEECCCCCCCCCHHEEEEECCEEECCCEEEE
YENVDFEPAGKDHHSSGGSFDTAKEIVKIFGGTPPITFQYDFISIKGHGGKISSSSGDVV
ECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEECCCCCCEE
SLKDVLEIYTPEVTRFLFASTKPNTEFSISFDLDVIKIYEDYDKFERVYYGIDEIQEKKK
EHHHHHHHHCCHHHHHHEECCCCCCEEEEEECCEEEEEHHHHHHHHHHHHCHHHHHHHHH
ETFKRIYELSQPKAPDKEIPYQIGFRHLSVICQIFEGDKDKIFTLLNNIKEHQKTKLINK
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
IECAINWIKKFAPEDFKFSLRSTFDNIEILQDNNKQAVIQLLKFLKENFNNITEKEIQDE
HHHHHHHHHHHCCCCCEEHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHH
IYNIARKNNIEPPLFFKQLYNILITKDKGPKLAGFIKTIGIEKFEEIVKHYI
HHHHHHHCCCCCCHHHHHHHHHEEECCCCCCHHHHHHHHCHHHHHHHHHHCC
>Mature Secondary Structure
MIKLSFNRGNIMKTAHWADFYAKKIITEKGEKEQYTVSSGITPSGTVHIGNFREVISVDL
CEEEEECCCCCEEEHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEECCHHHHHHHHH
VARALQDQGKQVRFIYSWDNYDVFRKVPKNMPDQELLTTYLRQAITRVPDTKTNKSSYAR
HHHHHHCCCCEEEEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCH
ANEIEFEQHLPTVGIEPEFIDQSLKYMSSDYANQIKFALDHKDEIATILNKYRTTQLADD
HCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHCCCC
WYPISIFCTKCNRDTTTIKNYNHCYSIEYYCECGNKESLDLRKTWACKLPWRIDWPMRWK
CEEEEEEEEECCCCCCEECCCCCEEEEEEEEECCCCCCCCCHHEEEEECCEEECCCEEEE
YENVDFEPAGKDHHSSGGSFDTAKEIVKIFGGTPPITFQYDFISIKGHGGKISSSSGDVV
ECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEECCCCCCEE
SLKDVLEIYTPEVTRFLFASTKPNTEFSISFDLDVIKIYEDYDKFERVYYGIDEIQEKKK
EHHHHHHHHCCHHHHHHEECCCCCCEEEEEECCEEEEEHHHHHHHHHHHHCHHHHHHHHH
ETFKRIYELSQPKAPDKEIPYQIGFRHLSVICQIFEGDKDKIFTLLNNIKEHQKTKLINK
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
IECAINWIKKFAPEDFKFSLRSTFDNIEILQDNNKQAVIQLLKFLKENFNNITEKEIQDE
HHHHHHHHHHHCCCCCEEHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHH
IYNIARKNNIEPPLFFKQLYNILITKDKGPKLAGFIKTIGIEKFEEIVKHYI
HHHHHHHCCCCCCHHHHHHHHHEEECCCCCCHHHHHHHHCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA