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The map label for this gene is rpi [H]

Identifier: 203284555

GI number: 203284555

Start: 708341

End: 709027

Strand: Reverse

Name: rpi [H]

Synonym: BDU_660

Alternate gene names: 203284555

Gene position: 709027-708341 (Counterclockwise)

Preceding gene: 203284557

Following gene: 203284553

Centisome position: 76.1

GC content: 27.8

Gene sequence:

>687_bases
ATGGAAAAACAAAAAGAATTGATCTCAAAATATGCAATTGATAATTATGTAACAAGCAACATGTTCATAGGAATTGGAAC
AGGAACAACTGTTTTTTATGCAATTAAACACTTAAGTTACAAAATAAAATCTGGTGCTTTAAAAAATCTTACATTTTATC
CAACAAGCAGTGACACACAATGCTTACTTGCAAAAGAAAATATTGCTTACGAATCAAAATTCACAAAACTTAACAAAAAT
ATAGATATCACAATCGACGGAGCTGACGAGGTTCTATTAGATAAAAAAGCATTAATTAAAGGTGGTGGAGCAGCTCACTT
AATGGAAAAAGTAGTCGCATATAACTCTAATCAGTTATTGATCATTGCAGATGAAACTAAAATAGTAACAAATTTAGGAG
AAAAAACACCAATACCAATAGAAATTGCCCCAAATGCCCTTGCATTTATTAAAGCCAAACTAGAAAAAATGAACTTTAAT
CCTGTTTTAAGAACATGTAAATCTAAAGCAGGACCACTAATTACTGACAATAATAATTATATCTTAGACATAAAAATGAA
TATTGAAAATCCTAAAGGAACTGAAAAATATTTTAAATTATTCCCTGGAATACTTGAAATTGGTATTTTTAATCATCAAA
ATACTAAAATCATATACTATCAAAATGGACAAATTAAAGAAACTTAA

Upstream 100 bases:

>100_bases
CTCAAAATAAAACATTGTTATTTACTGAATTATTAATGATATAATTTACCTTAAAGTTCGTATTCTAATAAACATTTAGT
AACTAAAAGGATTATTACAA

Downstream 100 bases:

>100_bases
AGCTCACTTTAAAAGAATTAACAATTAAATATTCTTCTATCAATCGCAAATAAAAATTCAATTTAAACCTCTCACATTGC
TCCAAATAAAGAATATCATT

Product: ribose 5-phosphate isomerase A

Products: NA

Alternate protein names: Phosphoriboisomerase A; PRI [H]

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MEKQKELISKYAIDNYVTSNMFIGIGTGTTVFYAIKHLSYKIKSGALKNLTFYPTSSDTQCLLAKENIAYESKFTKLNKN
IDITIDGADEVLLDKKALIKGGGAAHLMEKVVAYNSNQLLIIADETKIVTNLGEKTPIPIEIAPNALAFIKAKLEKMNFN
PVLRTCKSKAGPLITDNNNYILDIKMNIENPKGTEKYFKLFPGILEIGIFNHQNTKIIYYQNGQIKET

Sequences:

>Translated_228_residues
MEKQKELISKYAIDNYVTSNMFIGIGTGTTVFYAIKHLSYKIKSGALKNLTFYPTSSDTQCLLAKENIAYESKFTKLNKN
IDITIDGADEVLLDKKALIKGGGAAHLMEKVVAYNSNQLLIIADETKIVTNLGEKTPIPIEIAPNALAFIKAKLEKMNFN
PVLRTCKSKAGPLITDNNNYILDIKMNIENPKGTEKYFKLFPGILEIGIFNHQNTKIIYYQNGQIKET
>Mature_228_residues
MEKQKELISKYAIDNYVTSNMFIGIGTGTTVFYAIKHLSYKIKSGALKNLTFYPTSSDTQCLLAKENIAYESKFTKLNKN
IDITIDGADEVLLDKKALIKGGGAAHLMEKVVAYNSNQLLIIADETKIVTNLGEKTPIPIEIAPNALAFIKAKLEKMNFN
PVLRTCKSKAGPLITDNNNYILDIKMNIENPKGTEKYFKLFPGILEIGIFNHQNTKIIYYQNGQIKET

Specific function: Nonoxidative branch of the pentose phosphate pathway. [C]

COG id: COG0120

COG function: function code G; Ribose 5-phosphate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribose 5-phosphate isomerase family [H]

Homologues:

Organism=Homo sapiens, GI94536842, Length=231, Percent_Identity=34.1991341991342, Blast_Score=124, Evalue=9e-29,
Organism=Escherichia coli, GI1789280, Length=209, Percent_Identity=30.622009569378, Blast_Score=88, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17551758, Length=237, Percent_Identity=30.8016877637131, Blast_Score=104, Evalue=3e-23,
Organism=Saccharomyces cerevisiae, GI6324669, Length=238, Percent_Identity=31.9327731092437, Blast_Score=94, Evalue=1e-20,
Organism=Drosophila melanogaster, GI281364072, Length=224, Percent_Identity=38.8392857142857, Blast_Score=129, Evalue=1e-30,

Paralogues:

None

Copy number: 740 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004788
- InterPro:   IPR020672 [H]

Pfam domain/function: PF06026 Rib_5-P_isom_A [H]

EC number: =5.3.1.6 [H]

Molecular weight: Translated: 25505; Mature: 25505

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKQKELISKYAIDNYVTSNMFIGIGTGTTVFYAIKHLSYKIKSGALKNLTFYPTSSDTQ
CCHHHHHHHHHHHHCEEECCEEEEECCCHHHHHHHHHHHEEECCCCCCCEEEEECCCCCE
CLLAKENIAYESKFTKLNKNIDITIDGADEVLLDKKALIKGGGAAHLMEKVVAYNSNQLL
EEEEECCCCHHHHHHHCCCCEEEEECCCCCEEECCHHHHCCCCHHHHHHHHHHCCCCEEE
IIADETKIVTNLGEKTPIPIEIAPNALAFIKAKLEKMNFNPVLRTCKSKAGPLITDNNNY
EEECCCEEEECCCCCCCCEEEECCCHHHHHHHHHHHCCCCHHHHHHHHCCCCEEECCCCE
ILDIKMNIENPKGTEKYFKLFPGILEIGIFNHQNTKIIYYQNGQIKET
EEEEEEECCCCCCHHHHHHHCCCCEEEEEEECCCCEEEEEECCEEECC
>Mature Secondary Structure
MEKQKELISKYAIDNYVTSNMFIGIGTGTTVFYAIKHLSYKIKSGALKNLTFYPTSSDTQ
CCHHHHHHHHHHHHCEEECCEEEEECCCHHHHHHHHHHHEEECCCCCCCEEEEECCCCCE
CLLAKENIAYESKFTKLNKNIDITIDGADEVLLDKKALIKGGGAAHLMEKVVAYNSNQLL
EEEEECCCCHHHHHHHCCCCEEEEECCCCCEEECCHHHHCCCCHHHHHHHHHHCCCCEEE
IIADETKIVTNLGEKTPIPIEIAPNALAFIKAKLEKMNFNPVLRTCKSKAGPLITDNNNY
EEECCCEEEECCCCCCCCEEEECCCHHHHHHHHHHHCCCCHHHHHHHHCCCCEEECCCCE
ILDIKMNIENPKGTEKYFKLFPGILEIGIFNHQNTKIIYYQNGQIKET
EEEEEEECCCCCCHHHHHHHCCCCEEEEEEECCCCEEEEEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA