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The map label for this gene is rrp-1 [H]

Identifier: 203284329

GI number: 203284329

Start: 442647

End: 443579

Strand: Reverse

Name: rrp-1 [H]

Synonym: BDU_413

Alternate gene names: 203284329

Gene position: 443579-442647 (Counterclockwise)

Preceding gene: 203284330

Following gene: 203284323

Centisome position: 47.61

GC content: 28.08

Gene sequence:

>933_bases
GTGATGAAAGGTATAATTTTAGATAACTTTGATGAAATTGCGATTGAACCTCAAAAGTTATTACTTGTAGATGATACGCC
TACAAATTTAGATTTGTTACTAGATATTTTGCAAAATGATTATGATATTAGAGTTGCGCTAAATGGATTTGATGCTTTAA
AACAGGTGGAAATTGATAAACCAGATTTAATACTTCTTGATGTGTTGCTTCCAGATGTTAGTGGTTATGAAGTTTGTAGA
AGACTTAAAAATGATCCTGAGACTAGAGATATTTCTGTGATATTTATAAGTTCAAGAAATTCTACTGATGCACAACTTGA
AGGATTTAATGTTGGTGGTGTAGATTATATTTTAAAACCTTTTAATGGAAGGATTATTAATGCCAGAATTAAGACTCATC
TTGAACTTAAAAGGCTTAGGGATTATTTTAAAAATCTTTCAAGAATTGATGGCTTAACTCAAATTCCTAATAGAAGGTTT
TTTACAGATAAATTTGCTAAATCGTGGATGCAAGCATTAGAACATCAAGATAATGTTATTGTGGGAATGTTAGATATTGA
TTATTTTAAGAAATATAATGACAATTATGGACATACCAATGGTGATGAATGTCTTAAATTAATAGCCAAAAGTTTAAATA
GGATTGCTATTAAATATAAGATAGATGTTGCACGTTATGGTGGTGAGGAGTTTATTTTATTTTCTGTCAATAAAAGTTTA
GAAGAAATGATTAAGATTGTTAGTTTTTTAATTGAGGATATTAGAAATTTAGGAATAGTTCATGAGTATAGTGATATTTC
TCATTTTGTTACAGTTTCAATTGGACTTGCAGAACAAGTTCCGCAAGATTCCAATTTTACTAATATTATTAAACTTGCTG
ATGATAAGTTATATGAAGCTAAAATTTCGGGACGTAATCAATTTAAATATTAA

Upstream 100 bases:

>100_bases
TGTTATTTGATTCTCTTGTTGAATGTTTAAGGGTATATAATTTTAAGGAAAGTGTTAACATTATCAAACGTATGATGAGC
CATAATAGAATAGGGAAATT

Downstream 100 bases:

>100_bases
TCATGAAAATAGAAGTTAAATCTTATAAGTTAAAGACAATCCAATAGAGTCATAATAAACATACGAATTGTTTGTGCTTA
CCTTTTTTGTGATATCAGCT

Product: response regulatory protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MMKGIILDNFDEIAIEPQKLLLVDDTPTNLDLLLDILQNDYDIRVALNGFDALKQVEIDKPDLILLDVLLPDVSGYEVCR
RLKNDPETRDISVIFISSRNSTDAQLEGFNVGGVDYILKPFNGRIINARIKTHLELKRLRDYFKNLSRIDGLTQIPNRRF
FTDKFAKSWMQALEHQDNVIVGMLDIDYFKKYNDNYGHTNGDECLKLIAKSLNRIAIKYKIDVARYGGEEFILFSVNKSL
EEMIKIVSFLIEDIRNLGIVHEYSDISHFVTVSIGLAEQVPQDSNFTNIIKLADDKLYEAKISGRNQFKY

Sequences:

>Translated_310_residues
MMKGIILDNFDEIAIEPQKLLLVDDTPTNLDLLLDILQNDYDIRVALNGFDALKQVEIDKPDLILLDVLLPDVSGYEVCR
RLKNDPETRDISVIFISSRNSTDAQLEGFNVGGVDYILKPFNGRIINARIKTHLELKRLRDYFKNLSRIDGLTQIPNRRF
FTDKFAKSWMQALEHQDNVIVGMLDIDYFKKYNDNYGHTNGDECLKLIAKSLNRIAIKYKIDVARYGGEEFILFSVNKSL
EEMIKIVSFLIEDIRNLGIVHEYSDISHFVTVSIGLAEQVPQDSNFTNIIKLADDKLYEAKISGRNQFKY
>Mature_310_residues
MMKGIILDNFDEIAIEPQKLLLVDDTPTNLDLLLDILQNDYDIRVALNGFDALKQVEIDKPDLILLDVLLPDVSGYEVCR
RLKNDPETRDISVIFISSRNSTDAQLEGFNVGGVDYILKPFNGRIINARIKTHLELKRLRDYFKNLSRIDGLTQIPNRRF
FTDKFAKSWMQALEHQDNVIVGMLDIDYFKKYNDNYGHTNGDECLKLIAKSLNRIAIKYKIDVARYGGEEFILFSVNKSL
EEMIKIVSFLIEDIRNLGIVHEYSDISHFVTVSIGLAEQVPQDSNFTNIIKLADDKLYEAKISGRNQFKY

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=179, Percent_Identity=31.8435754189944, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87081881, Length=173, Percent_Identity=34.1040462427746, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=33.5365853658537, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786584, Length=177, Percent_Identity=27.683615819209, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=34.5454545454545, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI145693134, Length=176, Percent_Identity=31.25, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790860, Length=119, Percent_Identity=34.453781512605, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1786599, Length=116, Percent_Identity=33.6206896551724, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787802, Length=167, Percent_Identity=33.5329341317365, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788394, Length=117, Percent_Identity=34.1880341880342, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI87081977, Length=194, Percent_Identity=26.2886597938144, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787056, Length=181, Percent_Identity=28.7292817679558, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 35676; Mature: 35676

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKGIILDNFDEIAIEPQKLLLVDDTPTNLDLLLDILQNDYDIRVALNGFDALKQVEIDK
CCCCCEECCCHHHEECCCEEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHCCCCC
PDLILLDVLLPDVSGYEVCRRLKNDPETRDISVIFISSRNSTDAQLEGFNVGGVDYILKP
CCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEECCCCCCHHHEEEC
FNGRIINARIKTHLELKRLRDYFKNLSRIDGLTQIPNRRFFTDKFAKSWMQALEHQDNVI
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHCCCCEE
VGMLDIDYFKKYNDNYGHTNGDECLKLIAKSLNRIAIKYKIDVARYGGEEFILFSVNKSL
EEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHEEEEEEEEEEEECCCEEEEEECCCCH
EEMIKIVSFLIEDIRNLGIVHEYSDISHFVTVSIGLAEQVPQDSNFTNIIKLADDKLYEA
HHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEECHHHHCCCCCCCCEEEEECCCCEEEE
KISGRNQFKY
EECCCCCCCC
>Mature Secondary Structure
MMKGIILDNFDEIAIEPQKLLLVDDTPTNLDLLLDILQNDYDIRVALNGFDALKQVEIDK
CCCCCEECCCHHHEECCCEEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHCCCCC
PDLILLDVLLPDVSGYEVCRRLKNDPETRDISVIFISSRNSTDAQLEGFNVGGVDYILKP
CCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEECCCCCCHHHEEEC
FNGRIINARIKTHLELKRLRDYFKNLSRIDGLTQIPNRRFFTDKFAKSWMQALEHQDNVI
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHCCCCEE
VGMLDIDYFKKYNDNYGHTNGDECLKLIAKSLNRIAIKYKIDVARYGGEEFILFSVNKSL
EEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHEEEEEEEEEEEECCCEEEEEECCCCH
EEMIKIVSFLIEDIRNLGIVHEYSDISHFVTVSIGLAEQVPQDSNFTNIIKLADDKLYEA
HHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEECHHHHCCCCCCCCEEEEECCCCEEEE
KISGRNQFKY
EECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]