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The map label for this gene is ycfH [C]

Identifier: 203284114

GI number: 203284114

Start: 201669

End: 202466

Strand: Reverse

Name: ycfH [C]

Synonym: BDU_192

Alternate gene names: 203284114

Gene position: 202466-201669 (Counterclockwise)

Preceding gene: 203284115

Following gene: 203284111

Centisome position: 21.73

GC content: 25.19

Gene sequence:

>798_bases
ATGAAAGTTGATTTTAATAGAGCTATTTTTTTAGAAAAATTAATAGATACTCATGTTCATTTTAATGAAATGAAGAAACA
TTCTGTAGACATTCATTATGTTATTAGTGAATGTTTTAAAAGTGGCTTTTCTTATTTTATTGATATTGGACTTCATCCTA
GTGATTTTTATGAAAGGAAACAACTTTTAGATACTTATTCTAATATTGCATTAACAGTTGGAATTCATCCTTTAAATAAA
GCTTCAAATAGTGATTTTGAATTGATTGAAAAGATTTTAATGACAGAAAATGTTATTGCTATTGGTGAAGTTGGACTTGA
TTACCTTAAGGCAAATAATAAAAATGAACAAATTGAGGTTTTAGGGATTCAGTTAGATTTAGCTAGTAAATATCAAAAGC
CTGTTATCTTGCATGTGAGAGAAGCTTATGATGATATTTATAATATTGTTAAATCGTCTAATTTTATGCATAGAGGAATA
TTGCATTGTTATTCTGGTACTTATGATTATGCTAAAAAATTCATTGATCTTGGATTTAAGGTATCTTTTGCAGGTAATTT
AACTTTCAAAAATTCAGATCTTTTAAGAATGGTTTTAAAGAAGTTAAATATTGAAGATATTTTAATTGAGACAGATAGTC
CGTTTTTAGCACCAGTTCCTTTGAGAGGCAAGATTAATACTCCACTTTTTTTGGGATATACATGTATTGAGATTGCTAAA
ATTAAAAATTGTGATATAGAAAAAATTGTATCTACTTTTTATAATAATTTTAAGGATTTATTTAAAGATTTGATTTAA

Upstream 100 bases:

>100_bases
TTGAAGATGCTATTGATATTTTATCGAGTTTCTTGCAACTTGGCATGAAGAATGTTACCATTATTGACTATATTACTAAT
CTTAAAAAAAAGATGGATGC

Downstream 100 bases:

>100_bases
GAATAATTTTCTTTTATTATTATTATAAAATTTTTTATTGTTAAATTTGTAATTATTATTTTATTTTGATTTAAAATTCA
TTTATTGTTAAATTTATTTT

Product: Tatd, Mg-dependent DNase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MKVDFNRAIFLEKLIDTHVHFNEMKKHSVDIHYVISECFKSGFSYFIDIGLHPSDFYERKQLLDTYSNIALTVGIHPLNK
ASNSDFELIEKILMTENVIAIGEVGLDYLKANNKNEQIEVLGIQLDLASKYQKPVILHVREAYDDIYNIVKSSNFMHRGI
LHCYSGTYDYAKKFIDLGFKVSFAGNLTFKNSDLLRMVLKKLNIEDILIETDSPFLAPVPLRGKINTPLFLGYTCIEIAK
IKNCDIEKIVSTFYNNFKDLFKDLI

Sequences:

>Translated_265_residues
MKVDFNRAIFLEKLIDTHVHFNEMKKHSVDIHYVISECFKSGFSYFIDIGLHPSDFYERKQLLDTYSNIALTVGIHPLNK
ASNSDFELIEKILMTENVIAIGEVGLDYLKANNKNEQIEVLGIQLDLASKYQKPVILHVREAYDDIYNIVKSSNFMHRGI
LHCYSGTYDYAKKFIDLGFKVSFAGNLTFKNSDLLRMVLKKLNIEDILIETDSPFLAPVPLRGKINTPLFLGYTCIEIAK
IKNCDIEKIVSTFYNNFKDLFKDLI
>Mature_265_residues
MKVDFNRAIFLEKLIDTHVHFNEMKKHSVDIHYVISECFKSGFSYFIDIGLHPSDFYERKQLLDTYSNIALTVGIHPLNK
ASNSDFELIEKILMTENVIAIGEVGLDYLKANNKNEQIEVLGIQLDLASKYQKPVILHVREAYDDIYNIVKSSNFMHRGI
LHCYSGTYDYAKKFIDLGFKVSFAGNLTFKNSDLLRMVLKKLNIEDILIETDSPFLAPVPLRGKINTPLFLGYTCIEIAK
IKNCDIEKIVSTFYNNFKDLFKDLI

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=208, Percent_Identity=29.3269230769231, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI225903424, Length=276, Percent_Identity=27.1739130434783, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI110349730, Length=267, Percent_Identity=25.4681647940075, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI110349734, Length=267, Percent_Identity=25.4681647940075, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI226061853, Length=273, Percent_Identity=25.2747252747253, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI225903439, Length=157, Percent_Identity=31.8471337579618, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI226061614, Length=257, Percent_Identity=24.124513618677, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI226061595, Length=227, Percent_Identity=25.9911894273128, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1787342, Length=252, Percent_Identity=30.952380952381, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI87082439, Length=254, Percent_Identity=28.3464566929134, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI48994985, Length=237, Percent_Identity=27.0042194092827, Blast_Score=93, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17559024, Length=197, Percent_Identity=28.9340101522843, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI71980746, Length=263, Percent_Identity=27.3764258555133, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24648690, Length=204, Percent_Identity=30.3921568627451, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI221330018, Length=284, Percent_Identity=25.3521126760563, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24586117, Length=284, Percent_Identity=25.3521126760563, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 30524; Mature: 30524

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVDFNRAIFLEKLIDTHVHFNEMKKHSVDIHYVISECFKSGFSYFIDIGLHPSDFYERK
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
QLLDTYSNIALTVGIHPLNKASNSDFELIEKILMTENVIAIGEVGLDYLKANNKNEQIEV
HHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCEEEEHHHHHHHHHCCCCCCEEEE
LGIQLDLASKYQKPVILHVREAYDDIYNIVKSSNFMHRGILHCYSGTYDYAKKFIDLGFK
EEEEEEHHHHCCCCEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCEE
VSFAGNLTFKNSDLLRMVLKKLNIEDILIETDSPFLAPVPLRGKINTPLFLGYTCIEIAK
EEEECCEEECCHHHHHHHHHHCCCCEEEEECCCCEEECCCCCCCCCCCEEEHHHHHHHHH
IKNCDIEKIVSTFYNNFKDLFKDLI
HCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKVDFNRAIFLEKLIDTHVHFNEMKKHSVDIHYVISECFKSGFSYFIDIGLHPSDFYERK
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
QLLDTYSNIALTVGIHPLNKASNSDFELIEKILMTENVIAIGEVGLDYLKANNKNEQIEV
HHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCEEEEHHHHHHHHHCCCCCCEEEE
LGIQLDLASKYQKPVILHVREAYDDIYNIVKSSNFMHRGILHCYSGTYDYAKKFIDLGFK
EEEEEEHHHHCCCCEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCEE
VSFAGNLTFKNSDLLRMVLKKLNIEDILIETDSPFLAPVPLRGKINTPLFLGYTCIEIAK
EEEECCEEECCHHHHHHHHHHCCCCEEEEECCCCEEECCCCCCCCCCCEEEHHHHHHHHH
IKNCDIEKIVSTFYNNFKDLFKDLI
HCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]