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The map label for this gene is infC

Identifier: 203284111

GI number: 203284111

Start: 199429

End: 199989

Strand: Reverse

Name: infC

Synonym: BDU_189

Alternate gene names: 203284111

Gene position: 199989-199429 (Counterclockwise)

Preceding gene: 203284114

Following gene: 203284110

Centisome position: 21.47

GC content: 32.09

Gene sequence:

>561_bases
ATGATAAATAGAAATTCCGGTAAGGATAGAGATAGATCGAGGTCAGGTGATAAAGAATTGAGAATTAATCATAGAATTAA
GGCTCGTGAAGTTAGAGTTATTTTTAATGATGGTACTCAATCTGTTTTGCCAATTGAAGATGCTATTAAATGTGCTAGAG
ATGTTGAGCTTGATTTGGTTGAAATTTCGCCAAATGCATTGCCTCCTGTTTGTAAAATAATTGATTATGGAAAGTACAAG
TTTCATCAGGAAAAGCGTCAAAAAGAGCAAAGAAAAAATCAGAAAATAATTAAACTTAAAGAAGTTAGGATGCAACCCAA
AATAGATACTCATGATCTTGATTTTAAGTATAAAAATATTTTAGGATTCCTCAAAGAAGGAAATAAGGTAAAAGTTACTA
TAAGATTTAGAGGACGAGAACTTGCTCATACTCATTTAGGATATGGGATTTTAGAGAGCATTCTTGAACGCGTAGGTGAT
TCTAATTATGTTTTAGAATCGCCAGCTAAGATGGAAGGGAAGACAATGTTCTTAATTATTGCACCTAAATCTAGGAAGTA
A

Upstream 100 bases:

>100_bases
GTTATTGTATTTAATAGATCTGTGTTCGAATTTACTTTTTATGGAAGGTATATTAAAATTAGTTATTGATTAATACTGTT
TGAGGAGTATGTATTTTTAG

Downstream 100 bases:

>100_bases
TTGATAAGGAGATGTAGTATAAATGCCAAAAATGAAGACATGCAAAAGTGCAAGAAAAAGATATGCTTTTACTTCAAAGG
GTAAAGTTAAATATAAAAAG

Product: translation initiation factor IF-3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MINRNSGKDRDRSRSGDKELRINHRIKAREVRVIFNDGTQSVLPIEDAIKCARDVELDLVEISPNALPPVCKIIDYGKYK
FHQEKRQKEQRKNQKIIKLKEVRMQPKIDTHDLDFKYKNILGFLKEGNKVKVTIRFRGRELAHTHLGYGILESILERVGD
SNYVLESPAKMEGKTMFLIIAPKSRK

Sequences:

>Translated_186_residues
MINRNSGKDRDRSRSGDKELRINHRIKAREVRVIFNDGTQSVLPIEDAIKCARDVELDLVEISPNALPPVCKIIDYGKYK
FHQEKRQKEQRKNQKIIKLKEVRMQPKIDTHDLDFKYKNILGFLKEGNKVKVTIRFRGRELAHTHLGYGILESILERVGD
SNYVLESPAKMEGKTMFLIIAPKSRK
>Mature_186_residues
MINRNSGKDRDRSRSGDKELRINHRIKAREVRVIFNDGTQSVLPIEDAIKCARDVELDLVEISPNALPPVCKIIDYGKYK
FHQEKRQKEQRKNQKIIKLKEVRMQPKIDTHDLDFKYKNILGFLKEGNKVKVTIRFRGRELAHTHLGYGILESILERVGD
SNYVLESPAKMEGKTMFLIIAPKSRK

Specific function: IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins

COG id: COG0290

COG function: function code J; Translation initiation factor 3 (IF-3)

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IF-3 family

Homologues:

Organism=Escherichia coli, GI1788012, Length=167, Percent_Identity=41.9161676646707, Blast_Score=134, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IF3_BORDL (B5RL16)

Other databases:

- EMBL:   CP000976
- RefSeq:   YP_002221851.1
- EnsemblBacteria:   EBBORT00000001484
- GeneID:   6918273
- GenomeReviews:   CP000976_GR
- KEGG:   bdu:BDU_189
- GeneTree:   EBGT00050000007091
- HOGENOM:   HBG744268
- OMA:   FDRRAPV
- ProtClustDB:   PRK00028
- GO:   GO:0005737
- HAMAP:   MF_00080
- InterPro:   IPR019813
- InterPro:   IPR001288
- InterPro:   IPR019815
- InterPro:   IPR019814
- Gene3D:   G3DSA:3.10.20.80
- Gene3D:   G3DSA:3.30.110.10
- PANTHER:   PTHR10938
- TIGRFAMs:   TIGR00168

Pfam domain/function: PF00707 IF3_C; PF05198 IF3_N; SSF54364 IF3; SSF55200 IF3

EC number: NA

Molecular weight: Translated: 21641; Mature: 21641

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: PS00938 IF3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINRNSGKDRDRSRSGDKELRINHRIKAREVRVIFNDGTQSVLPIEDAIKCARDVELDLV
CCCCCCCCCCCCCCCCCCEEEEECEEEEEEEEEEEECCCCCEECHHHHHHHHHCCCEEEE
EISPNALPPVCKIIDYGKYKFHQEKRQKEQRKNQKIIKLKEVRMQPKIDTHDLDFKYKNI
EECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHH
LGFLKEGNKVKVTIRFRGRELAHTHLGYGILESILERVGDSNYVLESPAKMEGKTMFLII
HHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEEE
APKSRK
CCCCCC
>Mature Secondary Structure
MINRNSGKDRDRSRSGDKELRINHRIKAREVRVIFNDGTQSVLPIEDAIKCARDVELDLV
CCCCCCCCCCCCCCCCCCEEEEECEEEEEEEEEEEECCCCCEECHHHHHHHHHCCCEEEE
EISPNALPPVCKIIDYGKYKFHQEKRQKEQRKNQKIIKLKEVRMQPKIDTHDLDFKYKNI
EECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHH
LGFLKEGNKVKVTIRFRGRELAHTHLGYGILESILERVGDSNYVLESPAKMEGKTMFLII
HHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEEE
APKSRK
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA