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The map label for this gene is rpsF

Identifier: 203284040

GI number: 203284040

Start: 123443

End: 123847

Strand: Reverse

Name: rpsF

Synonym: BDU_118

Alternate gene names: 203284040

Gene position: 123847-123443 (Counterclockwise)

Preceding gene: 203284041

Following gene: 203284039

Centisome position: 13.29

GC content: 28.15

Gene sequence:

>405_bases
ATGATAAAGAAGTATGAAGGTTGTTTTTTATTTAGGAGTGAAGAGCTTGAATATAAATCTGCTTTGGAAGAAGTAAAAAA
ACAGCTTGTAGCTTTTGGTGCAGTTGATTTTGTTGAAAATTCTATTGGAGAGAGAGCACTAGAATATCCTGTTAGAAAAC
AGTTACGTGGTAGGTATGAAATAATAGAATTTAAAATGGCAAGTGATAATTTAAGAGAGCTTGAAGCACAATTAAAGCTT
ATTAAAAATTTGCTTAGATATATGATTTTGGTTAAAATTAACAGAAAAGTTAGTGTTAAGAAAGTTAAAAGAAGAAATTT
TAGAGAGTATAGAGATAATAGAGATATTAAAGAAAAAGAACAACCATCAGAGTCTAATGTTGATGCTGATTTAAAGGTAA
ATTGA

Upstream 100 bases:

>100_bases
TGTTTTTATATACTTTACATAAATAATATATTATAGCGTTAATAACCTTTGCCATAAATTAGAGAAATTTATGGTGCAAT
TAAGACCATAAGGAGTTGGA

Downstream 100 bases:

>100_bases
GGAGGTTGTAGATGGCCGACATTAATTCCTTGGTATTGTCTGGTAGACTTACTAGGGATTCTGAACTTACTTATACTGAT
TCAGGTATGGCTATTCTTAA

Product: 30S ribosomal protein S6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MIKKYEGCFLFRSEELEYKSALEEVKKQLVAFGAVDFVENSIGERALEYPVRKQLRGRYEIIEFKMASDNLRELEAQLKL
IKNLLRYMILVKINRKVSVKKVKRRNFREYRDNRDIKEKEQPSESNVDADLKVN

Sequences:

>Translated_134_residues
MIKKYEGCFLFRSEELEYKSALEEVKKQLVAFGAVDFVENSIGERALEYPVRKQLRGRYEIIEFKMASDNLRELEAQLKL
IKNLLRYMILVKINRKVSVKKVKRRNFREYRDNRDIKEKEQPSESNVDADLKVN
>Mature_134_residues
MIKKYEGCFLFRSEELEYKSALEEVKKQLVAFGAVDFVENSIGERALEYPVRKQLRGRYEIIEFKMASDNLRELEAQLKL
IKNLLRYMILVKINRKVSVKKVKRRNFREYRDNRDIKEKEQPSESNVDADLKVN

Specific function: Binds together with S18 to 16S ribosomal RNA

COG id: COG0360

COG function: function code J; Ribosomal protein S6

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS6_BORDL (B5RLI9)

Other databases:

- EMBL:   CP000976
- RefSeq:   YP_002221780.1
- EnsemblBacteria:   EBBORT00000000994
- GeneID:   6918202
- GenomeReviews:   CP000976_GR
- KEGG:   bdu:BDU_118
- GeneTree:   EBGT00050000006977
- HOGENOM:   HBG354167
- OMA:   RYEIIEF
- ProtClustDB:   PRK00453
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00360
- InterPro:   IPR000529
- InterPro:   IPR020814
- InterPro:   IPR014717
- Gene3D:   G3DSA:3.30.70.60
- TIGRFAMs:   TIGR00166

Pfam domain/function: PF01250 Ribosomal_S6; SSF54995 Ribosomal_S6

EC number: NA

Molecular weight: Translated: 16007; Mature: 16007

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS01048 RIBOSOMAL_S6

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKYEGCFLFRSEELEYKSALEEVKKQLVAFGAVDFVENSIGERALEYPVRKQLRGRYE
CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
IIEFKMASDNLRELEAQLKLIKNLLRYMILVKINRKVSVKKVKRRNFREYRDNRDIKEKE
HEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHC
QPSESNVDADLKVN
CCCCCCCCCCEEEC
>Mature Secondary Structure
MIKKYEGCFLFRSEELEYKSALEEVKKQLVAFGAVDFVENSIGERALEYPVRKQLRGRYE
CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
IIEFKMASDNLRELEAQLKLIKNLLRYMILVKINRKVSVKKVKRRNFREYRDNRDIKEKE
HEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHC
QPSESNVDADLKVN
CCCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA