| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197120374
Identifier: 197120374
GI number: 197120374
Start: 4555929
End: 4557260
Strand: Direct
Name: 197120374
Synonym: Gbem_4013
Alternate gene names: NA
Gene position: 4555929-4557260 (Clockwise)
Preceding gene: 197120373
Following gene: 197120375
Centisome position: 98.72
GC content: 64.26
Gene sequence:
>1332_bases ATGCAAGCTACCAATTTCACATCCACCATTATCCCCAGCAGGCGCGGCCGGGATTCCCGCAGCGCGGCCGCGCCGTTACC TCCCCTCCCCCACCGCCTAAGGTGCCTTGCCCGCTTTTGGCTTGCCGCCTGCCTGGCGCTCCTCCTGCTCCTTCCCCCTG GCGCACGCGCGGCTGCTTCAGAACTCTCCGCCACCCTCTACTTCTTCTGGGGCGTCGGCTGCCCACACTGCACCAAGGCG AAGCCCTTCCTGGAAGAGCTGAAAAGGAAATACCCCACCCTGCGCATCGAGTCCTATGAGGTGCTGGAAAAGCGCGAGAA CATTCCGCTCCTTGTGGCGATGGCCCGCGCCCGCCACAAGGAGGCGACCGGGGTGCCGGTCTTCATCATCGGCCAGGAGA TGTTCAGCGGCTTTTCTGCTGAAACCGCGGCGGAGGTGGAACAGGCCGTACGCCTGGCGTTGCAGCCCGTCGCGCCGCAG AAACAGGCCGCCCCGAAACCCGCCCCTCCCGTCAGGCTCCCGCTTCTGGGCCCGGTCGACGCGCAGAGCCTGTCGCTTCC CGTTTTCACCGTCGCGGTCGCGCTTTTGGACAGCCTCAACCCCTGCGCTTTCTTCGTGCTCTTCTTCCTGTTAAGCCTGT TGATCCACGCCCATTCGCGGCGCCGCATGCTTCTCATCGGCGGGCTCTTCGTCTTTTTCTCCGGGCTCGTCTACTTCGTC TTCATGGCGGCCTGGCTCAACCTCTTCCTCATCACCGGCGGGCTTCCCGCCATCACCTTCGCCGCGGGGATCGTGGCGCT CTTCGTCGGCGCGGTGAACGTCAAGGAGTTCTTCTATTTCGGGCAGGGGGTCTCGCTCAGCATCCCGGAACAGCAGAAAC CGAAGCTCTTCGCCCGCATGAGGAGGCTCCTCAGGGCGGATTCGCTTCCTTCCCTGCTGGCCGGGACCACCGTGCTGGCT CTCGCCGCCAACAGCTACGAGCTCCTCTGCACCGCCGGCTTTCCCATGGTCTTCACCCGCATGCTCACCCTGAGGGAACT CCCGACATACAGCTACTACGCCTATCTTGCCTTCTACTGCACGATCTACGCGCTTCCCCTGGCGGTTATCGTCGCGCTCT TCACGGTGAAGCTCGGCGAGAGAAAGCTGACGCAATGGCAGGGGCGCGTGCTGAAGCTGGTCTCGGGATTGATGATGCTG GGGCTGGGACTGGTGCTGCTCATCGACCCGGCGCTGCTGAACAAACCGCTTGCCTCGGCGGGGCTTCTCGCTGGCACGCT GGCCGCGGCGGCGCTTTTGGCAGCTTTCGCCAGGAAAAGGGGCGCGGGTTAG
Upstream 100 bases:
>100_bases CCCCGTGGTTTATGCCTGGCTCAAGACCGAGCTCAAGGCGAAGCGGCTGGTATAAGCGACGGCAGGTAGGCATCCGCTGC ATTTTTAGTATCTTTAACGG
Downstream 100 bases:
>100_bases CCTAGGGAAGATAAACGATGCCGCGGGAGGCTCTCCCGGACGGCGACTTCGGCGGCAATGCCGGTTGACTCCGCAGACTA ATAAATTATCATCTGCTAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 443; Mature: 443
Protein sequence:
>443_residues MQATNFTSTIIPSRRGRDSRSAAAPLPPLPHRLRCLARFWLAACLALLLLLPPGARAAASELSATLYFFWGVGCPHCTKA KPFLEELKRKYPTLRIESYEVLEKRENIPLLVAMARARHKEATGVPVFIIGQEMFSGFSAETAAEVEQAVRLALQPVAPQ KQAAPKPAPPVRLPLLGPVDAQSLSLPVFTVAVALLDSLNPCAFFVLFFLLSLLIHAHSRRRMLLIGGLFVFFSGLVYFV FMAAWLNLFLITGGLPAITFAAGIVALFVGAVNVKEFFYFGQGVSLSIPEQQKPKLFARMRRLLRADSLPSLLAGTTVLA LAANSYELLCTAGFPMVFTRMLTLRELPTYSYYAYLAFYCTIYALPLAVIVALFTVKLGERKLTQWQGRVLKLVSGLMML GLGLVLLIDPALLNKPLASAGLLAGTLAAAALLAAFARKRGAG
Sequences:
>Translated_443_residues MQATNFTSTIIPSRRGRDSRSAAAPLPPLPHRLRCLARFWLAACLALLLLLPPGARAAASELSATLYFFWGVGCPHCTKA KPFLEELKRKYPTLRIESYEVLEKRENIPLLVAMARARHKEATGVPVFIIGQEMFSGFSAETAAEVEQAVRLALQPVAPQ KQAAPKPAPPVRLPLLGPVDAQSLSLPVFTVAVALLDSLNPCAFFVLFFLLSLLIHAHSRRRMLLIGGLFVFFSGLVYFV FMAAWLNLFLITGGLPAITFAAGIVALFVGAVNVKEFFYFGQGVSLSIPEQQKPKLFARMRRLLRADSLPSLLAGTTVLA LAANSYELLCTAGFPMVFTRMLTLRELPTYSYYAYLAFYCTIYALPLAVIVALFTVKLGERKLTQWQGRVLKLVSGLMML GLGLVLLIDPALLNKPLASAGLLAGTLAAAALLAAFARKRGAG >Mature_443_residues MQATNFTSTIIPSRRGRDSRSAAAPLPPLPHRLRCLARFWLAACLALLLLLPPGARAAASELSATLYFFWGVGCPHCTKA KPFLEELKRKYPTLRIESYEVLEKRENIPLLVAMARARHKEATGVPVFIIGQEMFSGFSAETAAEVEQAVRLALQPVAPQ KQAAPKPAPPVRLPLLGPVDAQSLSLPVFTVAVALLDSLNPCAFFVLFFLLSLLIHAHSRRRMLLIGGLFVFFSGLVYFV FMAAWLNLFLITGGLPAITFAAGIVALFVGAVNVKEFFYFGQGVSLSIPEQQKPKLFARMRRLLRADSLPSLLAGTTVLA LAANSYELLCTAGFPMVFTRMLTLRELPTYSYYAYLAFYCTIYALPLAVIVALFTVKLGERKLTQWQGRVLKLVSGLMML GLGLVLLIDPALLNKPLASAGLLAGTLAAAALLAAFARKRGAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48210; Mature: 48210
Theoretical pI: Translated: 10.49; Mature: 10.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQATNFTSTIIPSRRGRDSRSAAAPLPPLPHRLRCLARFWLAACLALLLLLPPGARAAAS CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH ELSATLYFFWGVGCPHCTKAKPFLEELKRKYPTLRIESYEVLEKRENIPLLVAMARARHK HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEECHHHHHHHCCCCCHHHHHHHHHCC EATGVPVFIIGQEMFSGFSAETAAEVEQAVRLALQPVAPQKQAAPKPAPPVRLPLLGPVD CCCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCEECCCCCCCC AQSLSLPVFTVAVALLDSLNPCAFFVLFFLLSLLIHAHSRRRMLLIGGLFVFFSGLVYFV CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH FMAAWLNLFLITGGLPAITFAAGIVALFVGAVNVKEFFYFGQGVSLSIPEQQKPKLFARM HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHH RRLLRADSLPSLLAGTTVLALAANSYELLCTAGFPMVFTRMLTLRELPTYSYYAYLAFYC HHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHH TIYALPLAVIVALFTVKLGERKLTQWQGRVLKLVSGLMMLGLGLVLLIDPALLNKPLASA HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHH GLLAGTLAAAALLAAFARKRGAG HHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MQATNFTSTIIPSRRGRDSRSAAAPLPPLPHRLRCLARFWLAACLALLLLLPPGARAAAS CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH ELSATLYFFWGVGCPHCTKAKPFLEELKRKYPTLRIESYEVLEKRENIPLLVAMARARHK HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEECHHHHHHHCCCCCHHHHHHHHHCC EATGVPVFIIGQEMFSGFSAETAAEVEQAVRLALQPVAPQKQAAPKPAPPVRLPLLGPVD CCCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCEECCCCCCCC AQSLSLPVFTVAVALLDSLNPCAFFVLFFLLSLLIHAHSRRRMLLIGGLFVFFSGLVYFV CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH FMAAWLNLFLITGGLPAITFAAGIVALFVGAVNVKEFFYFGQGVSLSIPEQQKPKLFARM HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHH RRLLRADSLPSLLAGTTVLALAANSYELLCTAGFPMVFTRMLTLRELPTYSYYAYLAFYC HHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHH TIYALPLAVIVALFTVKLGERKLTQWQGRVLKLVSGLMMLGLGLVLLIDPALLNKPLASA HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHH GLLAGTLAAAALLAAFARKRGAG HHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA