| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197120345
Identifier: 197120345
GI number: 197120345
Start: 4520486
End: 4521769
Strand: Direct
Name: 197120345
Synonym: Gbem_3984
Alternate gene names: NA
Gene position: 4520486-4521769 (Clockwise)
Preceding gene: 197120343
Following gene: 308535396
Centisome position: 97.95
GC content: 54.44
Gene sequence:
>1284_bases ATGGGAATCTTGTTCCAAGTTGAACTGAGCTTCATGCCGATTCCGGACATTTTGCAGTGGATCGACATGAACCGTCTCAC TTGCGTGGTTGCCATTACTCGCGAGAGCGACAGCGGCATAACGTTTTACCTTGAGAACGGAAAGCTGGTACTCGCCGGGT CCCAGAAAAAGGGGCTGCAGTTCGGCCAGTTCCTCGCCGCCTCAGGCGTGCTCTCCGAAGTGCAGGTATTCCAAGCGCTA ACCGAAAGCAAGAGCAAAGGCATTTCCCTCACCAGATACCTGGTTGAGACTTCCCTCGTATCTTCCAATGTCCTCGCCGA TATCATGTCCGACCTGGTCGAGAAACTCCTCCTTGACCTGCTCTCCAACAACGCCGGTTCAGTCACCATCACTACGCCGC TTCCCGAAATTCTTGCCGGTGGGCCGATTTCCCTGGAAACAGGGAGGGTCATCTTCAACGCAGTCAGGATCTACAACGAA CAGAACAGGGACTCGCAGCAGCGGGATGAGGCGATCGAGGCCATCAACAAGCGGCTTTACAATGAGGATTTCCAGCTTCC GGTTCTCCCTGGCATGCTCATGCAGTTGATTTCGCTGATGGAAGATGAGAGGACCACGGTACAGGAGATGGTCAAACTGA TCATGACGGATCAGGTCCTGATCTCCCGCATCCTCAAAGTTGCCAACTCGGCTTTTTACTCAGCGTCGGGGCAGGTGGAC TCGATTCACTACGCCATTGTCCGGCTTGGGATGCGTGAGGTGCTGAATATCGTGACCGGTATTCAGGTGCTCTCGATGCA GAACCGCGATATTCCCCAGGAGAAGTTCCAGGCGATCCTCGATGGCGCGTTGAAGACGGCTTTTCTCGCCAGCGGTCTGG CGAGGCAGCTGAGAGAGGATCCGGAAGAGGCGTTTCTTGGCGGGTTGCTACTTGATCTCGGCAAGACCGTGATACTGAGT GTGGCGAAGGATTTCGAGATAGACGAGTCGCTTTTCGATGAGCTCATGCATTCCCGGCATGCTGAAATCGGGGCGATGAT AGCCAGAAAGTGGAATTACCCCGAGTCGATCCAGAATCTGATCCGCTACCATCACAACCGCAACTTCGGCGACATCGTCA ACAAGATGATCGCGCTTCTCCAGATAGCGGATCAGGCAGTGCGGTCCCCGTCCGGGAAGGAGATAGATCCCGATCTGCTC GGTTCTCTCGGCCTCCCACTGGAAGCGGTTATGGAGGTCCATTCGAAGGCAATGGATTCCTTCAACCAGATAAAGTCCAT GTAA
Upstream 100 bases:
>100_bases TTGGAAAAAATGCCGGATTTAGTATTATGTCTACGGATTCTAAATTAGTGTCAGGTCCGCGGAATGCTAATGTCCCCCGA ACTGTATGAAGGTGGGTATT
Downstream 100 bases:
>100_bases AGGGATTTGGCCTCAAGGCAGTGAACGAAACGGAGAGGATTAGAGCGTAGAAGTGAAAAGCCCCCCTGGTTGTCGCCAGG GGGGCTTTTTTGTTAGGGGT
Product: metal-dependent phosphoesterase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 427; Mature: 426
Protein sequence:
>427_residues MGILFQVELSFMPIPDILQWIDMNRLTCVVAITRESDSGITFYLENGKLVLAGSQKKGLQFGQFLAASGVLSEVQVFQAL TESKSKGISLTRYLVETSLVSSNVLADIMSDLVEKLLLDLLSNNAGSVTITTPLPEILAGGPISLETGRVIFNAVRIYNE QNRDSQQRDEAIEAINKRLYNEDFQLPVLPGMLMQLISLMEDERTTVQEMVKLIMTDQVLISRILKVANSAFYSASGQVD SIHYAIVRLGMREVLNIVTGIQVLSMQNRDIPQEKFQAILDGALKTAFLASGLARQLREDPEEAFLGGLLLDLGKTVILS VAKDFEIDESLFDELMHSRHAEIGAMIARKWNYPESIQNLIRYHHNRNFGDIVNKMIALLQIADQAVRSPSGKEIDPDLL GSLGLPLEAVMEVHSKAMDSFNQIKSM
Sequences:
>Translated_427_residues MGILFQVELSFMPIPDILQWIDMNRLTCVVAITRESDSGITFYLENGKLVLAGSQKKGLQFGQFLAASGVLSEVQVFQAL TESKSKGISLTRYLVETSLVSSNVLADIMSDLVEKLLLDLLSNNAGSVTITTPLPEILAGGPISLETGRVIFNAVRIYNE QNRDSQQRDEAIEAINKRLYNEDFQLPVLPGMLMQLISLMEDERTTVQEMVKLIMTDQVLISRILKVANSAFYSASGQVD SIHYAIVRLGMREVLNIVTGIQVLSMQNRDIPQEKFQAILDGALKTAFLASGLARQLREDPEEAFLGGLLLDLGKTVILS VAKDFEIDESLFDELMHSRHAEIGAMIARKWNYPESIQNLIRYHHNRNFGDIVNKMIALLQIADQAVRSPSGKEIDPDLL GSLGLPLEAVMEVHSKAMDSFNQIKSM >Mature_426_residues GILFQVELSFMPIPDILQWIDMNRLTCVVAITRESDSGITFYLENGKLVLAGSQKKGLQFGQFLAASGVLSEVQVFQALT ESKSKGISLTRYLVETSLVSSNVLADIMSDLVEKLLLDLLSNNAGSVTITTPLPEILAGGPISLETGRVIFNAVRIYNEQ NRDSQQRDEAIEAINKRLYNEDFQLPVLPGMLMQLISLMEDERTTVQEMVKLIMTDQVLISRILKVANSAFYSASGQVDS IHYAIVRLGMREVLNIVTGIQVLSMQNRDIPQEKFQAILDGALKTAFLASGLARQLREDPEEAFLGGLLLDLGKTVILSV AKDFEIDESLFDELMHSRHAEIGAMIARKWNYPESIQNLIRYHHNRNFGDIVNKMIALLQIADQAVRSPSGKEIDPDLLG SLGLPLEAVMEVHSKAMDSFNQIKSM
Specific function: Unknown
COG id: COG1639
COG function: function code T; Predicted signal transduction protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR013976 [H]
Pfam domain/function: PF02518 HATPase_c; PF08668 HDOD [H]
EC number: NA
Molecular weight: Translated: 47430; Mature: 47298
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGILFQVELSFMPIPDILQWIDMNRLTCVVAITRESDSGITFYLENGKLVLAGSQKKGLQ CCEEEEEEECCCCHHHHHHHHCCCCEEEEEEEEECCCCCEEEEEECCEEEEECCCCCCCH FGQFLAASGVLSEVQVFQALTESKSKGISLTRYLVETSLVSSNVLADIMSDLVEKLLLDL HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSNNAGSVTITTPLPEILAGGPISLETGRVIFNAVRIYNEQNRDSQQRDEAIEAINKRLY HCCCCCEEEEECCCHHHHCCCCCEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC NEDFQLPVLPGMLMQLISLMEDERTTVQEMVKLIMTDQVLISRILKVANSAFYSASGQVD CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH SIHYAIVRLGMREVLNIVTGIQVLSMQNRDIPQEKFQAILDGALKTAFLASGLARQLRED HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC PEEAFLGGLLLDLGKTVILSVAKDFEIDESLFDELMHSRHAEIGAMIARKWNYPESIQNL HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH IRYHHNRNFGDIVNKMIALLQIADQAVRSPSGKEIDPDLLGSLGLPLEAVMEVHSKAMDS HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHH FNQIKSM HHHHHCC >Mature Secondary Structure GILFQVELSFMPIPDILQWIDMNRLTCVVAITRESDSGITFYLENGKLVLAGSQKKGLQ CEEEEEEECCCCHHHHHHHHCCCCEEEEEEEEECCCCCEEEEEECCEEEEECCCCCCCH FGQFLAASGVLSEVQVFQALTESKSKGISLTRYLVETSLVSSNVLADIMSDLVEKLLLDL HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSNNAGSVTITTPLPEILAGGPISLETGRVIFNAVRIYNEQNRDSQQRDEAIEAINKRLY HCCCCCEEEEECCCHHHHCCCCCEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC NEDFQLPVLPGMLMQLISLMEDERTTVQEMVKLIMTDQVLISRILKVANSAFYSASGQVD CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH SIHYAIVRLGMREVLNIVTGIQVLSMQNRDIPQEKFQAILDGALKTAFLASGLARQLRED HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC PEEAFLGGLLLDLGKTVILSVAKDFEIDESLFDELMHSRHAEIGAMIARKWNYPESIQNL HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH IRYHHNRNFGDIVNKMIALLQIADQAVRSPSGKEIDPDLLGSLGLPLEAVMEVHSKAMDS HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHH FNQIKSM HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9665876 [H]