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The map label for this gene is rbpE [H]

Identifier: 197120321

GI number: 197120321

Start: 4496985

End: 4497572

Strand: Direct

Name: rbpE [H]

Synonym: Gbem_3960

Alternate gene names: 197120321

Gene position: 4496985-4497572 (Clockwise)

Preceding gene: 197120320

Following gene: 197120322

Centisome position: 97.44

GC content: 63.27

Gene sequence:

>588_bases
ATGGCCAAAGCAGGAAAAGAATTGTACGTCGGAAGCCTGTCCTACGACGCTACGGAATACGATATTCACAAGATGTTCTC
CGTCTCAGGGACGGTGACCTCCGTTCACCTGATCACGGATGCTGTCACCGGAGAGTTCAAAGGGTGCGGCTACGTCAGGA
TGTCGACCGAGGCCGAGGCCAAGGACGCCATCGATTCGCTGGACGGAGCCTGGCTACTCGACAAGTCGATCAAGGTCTCC
TACGCGACCCCCCAGAAGATGAAGCCCGGCGGCGGCGGTGCCAAGGCGCTCCCGAAACGCTGGGGCAAGAGCGCAGCGGA
AAAGGCTGCAGCAGGCAAGCCGGCGGCTCCCAAGGCTGCAGCAGGAAAGCCAGCAGCTCCCAAGGCTGCAGCGGCAAAAC
CCGCAGCGGCAAGGCCCGCGGCAAAGGAAACGGCGGCTAGACCGGCAGGCGCCAAGCCCGCGGCTGCAAGAAGCGCTGCC
GCCAAACCGGCTTCCTCCCGTCCCGCGAGTTCAAAACCCGCAGGTTCGAGGCCAGCCTCTTCAAGACCCAGCTCCGCGAA
ACCCGGGAGCAGATCCGGCAAGCGGTAA

Upstream 100 bases:

>100_bases
GGGAGCGCAGGGGATAAGGGCGCGGCCGCGCGGGAAAGTTTGCAGCGCGGCTGCCGATTATGCTAGAGTGTGCCGATCAT
CGGCAAGGAGAACTCATTAA

Downstream 100 bases:

>100_bases
CCCAAATCTCCCTCCCCCTCCGGGGGGAGGAGTATTGCCTCCCTTCCTTAAAACAACCCACCTTCCCTTCTAACCAGCTT
CAGTCTATACTACGCCTCAT

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MAKAGKELYVGSLSYDATEYDIHKMFSVSGTVTSVHLITDAVTGEFKGCGYVRMSTEAEAKDAIDSLDGAWLLDKSIKVS
YATPQKMKPGGGGAKALPKRWGKSAAEKAAAGKPAAPKAAAGKPAAPKAAAAKPAAARPAAKETAARPAGAKPAAARSAA
AKPASSRPASSKPAGSRPASSRPSSAKPGSRSGKR

Sequences:

>Translated_195_residues
MAKAGKELYVGSLSYDATEYDIHKMFSVSGTVTSVHLITDAVTGEFKGCGYVRMSTEAEAKDAIDSLDGAWLLDKSIKVS
YATPQKMKPGGGGAKALPKRWGKSAAEKAAAGKPAAPKAAAGKPAAPKAAAAKPAAARPAAKETAARPAGAKPAAARSAA
AKPASSRPASSKPAGSRPASSRPSSAKPGSRSGKR
>Mature_194_residues
AKAGKELYVGSLSYDATEYDIHKMFSVSGTVTSVHLITDAVTGEFKGCGYVRMSTEAEAKDAIDSLDGAWLLDKSIKVSY
ATPQKMKPGGGGAKALPKRWGKSAAEKAAAGKPAAPKAAAGKPAAPKAAAAKPAAARPAAKETAARPAGAKPAAARSAAA
KPASSRPASSKPAGSRPASSRPSSAKPGSRSGKR

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 19560; Mature: 19429

Theoretical pI: Translated: 10.90; Mature: 10.90

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAGKELYVGSLSYDATEYDIHKMFSVSGTVTSVHLITDAVTGEFKGCGYVRMSTEAEA
CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHCCCCCCCEEEEECCCCHH
KDAIDSLDGAWLLDKSIKVSYATPQKMKPGGGGAKALPKRWGKSAAEKAAAGKPAAPKAA
HHHHHHCCCCEEECCCEEEEECCCCCCCCCCCCCCHHHHHHCHHHHHHHHCCCCCCCCCC
AGKPAAPKAAAAKPAAARPAAKETAARPAGAKPAAARSAAAKPASSRPASSKPAGSRPAS
CCCCCCCCHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
SRPSSAKPGSRSGKR
CCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKAGKELYVGSLSYDATEYDIHKMFSVSGTVTSVHLITDAVTGEFKGCGYVRMSTEAEA
CCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHCCCCCCCEEEEECCCCHH
KDAIDSLDGAWLLDKSIKVSYATPQKMKPGGGGAKALPKRWGKSAAEKAAAGKPAAPKAA
HHHHHHCCCCEEECCCEEEEECCCCCCCCCCCCCCHHHHHHCHHHHHHHHCCCCCCCCCC
AGKPAAPKAAAAKPAAARPAAKETAARPAGAKPAAARSAAAKPASSRPASSKPAGSRPAS
CCCCCCCCHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
SRPSSAKPGSRSGKR
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]