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The map label for this gene is atoS [C]

Identifier: 197120239

GI number: 197120239

Start: 4416319

End: 4418340

Strand: Direct

Name: atoS [C]

Synonym: Gbem_3878

Alternate gene names: 197120239

Gene position: 4416319-4418340 (Clockwise)

Preceding gene: 197120238

Following gene: 197120251

Centisome position: 95.69

GC content: 62.66

Gene sequence:

>2022_bases
ATGAAGAAAGCCTCTGACCCGCCCCAACCCGACCCCCAGGACGCCCTGGCTGCGCTGCAGCAAAAGCTCGCAGGTCTTGG
GGAATCCTCGATGCGCAAGAGCTACTACCCCGAGCTGCAGGAGCGCCTTGAGGAACTGGAACGCTTCAAGGCCTTGCTGG
ATCACAGCAACGAATCCATCTTCCTGATCGAGGTCTCCACCGGGCGCATCGTCGACCTGAACGACGCGGCCAGCCGCCAG
ACCGGCTGGAGCCGCGACGAGCTCCTGCAGCAATCCCTATTCGATCTCTCCAACCTGCAGCAAAGCCCCGCCGCGGAAGC
GCTCGTCCGCTCCCCCGAGGAGACGGGAAGCGTCCGTATGCTCGCCGTCACCGAACTCCACCGCAAGGACGGCGGGCGTT
TTCCCGCCGAGATCACCCTGAACCGGATGCAGTTCCGCGAGAATTCCTACGTGCTGGCGGTCGCCCGCGACATCACCCAA
AGGAAGGCGATGGAGGAGGCGCTTAGGGAGAGCGAGGAATTCCTGAAGAACATCGTGGACCACATCCCTGCGGTGGTTTT
CGCCAAGGAGGTGCAGGGGCTGCGCTTCGTCACCATCAACAAGGCGTGCCAGGAGGTGTTCGGCTTGAGCCGGGCGGAGG
TGCTCGGCCGCACCAACTACGACCTCTTTCCAAAGGAGCAGGCCGAGTTCTTCACCAAGATGGATCGGGAGACCCTCGCC
AAGGGCGAGCTGGTGGAAGTCCCGGAGGAGACCATCACCACCGCAAACGGCGACCGCATCCTGCGGGTGAAGAAGATCCC
TCTTTTCGACAACCAGGGGAAGGAGCGTTTCCTGCTGGGGATCGCCGAGGACATCACGGAAAGGAAGCAACTGGAAGAAA
AGCTGCTGCAATCGCAGAAGATGGAGGCGATCGGTCAGCTGGCCGGCGGGGTGGCGCACGACTTCAACAACATCCTGATG
GTGATACTCGGCTACGGGAGCATCCTGCTCAACGAAGGGGCGCTGCCGGCGCGGCAAAAGGAGCAGGTGGAGCAGATCAT
GAACGCGGCGGACAAGGCGGCGAAACTCACCTCCGACCTCCTCGCCTTCAGCCGAAAGCAGGTGATCAAGCCCGCCACCA
TGAACCTGAACGACATCATCCTGCACGTGGAAAAGTTCCTCTCCCGCATCATCGGCGAGGACGTCCAGCTGAAGGCGCGG
CTCGCTCCGCGCGAACTGCAGGTCGACGTCGACCGGGGGCAAATTGAGCAGGTGCTGATCAACCTCGCCACCAACGCCCG
CGACGCCATGCCCAAAGGGGGGCTGCTCACCATCGAGACCTCGTCGCTGCAGATCGACGAAGCCTTCGTCCAGGCCAACG
GCATCGGCGCCCCAGGCCCTTACGCCGTCATCTCCATCTCCGACACCGGCGTCGGCATGGACGAACAGACCCGCAGGAGG
ATCTTCGAGCCCTTCTTCACCACCAAGATAGTGGGGAAGGGAACAGGCCTCGGCATGTCCATCGTCTACGGCATCATCCA
GCAGCACAACGGCTTCGTGAACGTCTACAGCGAGCCGCAGCTAGGGACCACTTTCCGCATCTACCTCCCCTTCAGCGAAA
AAAGCGCCGACAGGGCTCTGGAACCCCAAGCCCCCGACACACCTCCGGGCGGGGTGGAGACCATACTCGTGGTGGAGGAC
GAGCCGGATCTGCGCCTGCTCTTGCAGAACATCCTTTCCGGCGCCGGGTACCGTGTCCTCCTGGCCGAGAACGGGCAGGT
TGCAGTCGAGCAGTACGCAGCCGGGGCAAGGGGGGAGATAGCGCTGGTGCTGATGGACATGATCATGCCGGGGATGAGCG
GCAAGGAAGCCTGCCACGCCATCCGCGCCATCGAACCCGCGGCCAAGGTGCTTTACACCAGCGGCTACACCATGGACATC
ATCAAGAGCCGCGACCTGTTGGAGGAAGGGACTGAACTCCTCATGAAGCCGGTCCGCCCCCTGGAGCTTTTGAAGAAGGT
GCGGGAGATGCTGGACAGGTAG

Upstream 100 bases:

>100_bases
GGGGTGAGCGACCTCTCCCTGTTCAGCGAGCATGCCCTCAAAGACCCCTGCATGGCGACGAACCCGCGCCGCCCCTCCAA
GAGGGACATCGAGGTCGTGT

Downstream 100 bases:

>100_bases
TGAATCAATTGACAATTGACGATTGACAATTGACAACGGTTTGCTTTCGACTGGTCGCGGCGTCAAAATTAGCCGCCGGC
TGGGCAGGGGTAGTTGAAAA

Product: PAS/PAS domain-containing sensor histidine kinase response regulator

Products: NA

Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]

Number of amino acids: Translated: 673; Mature: 673

Protein sequence:

>673_residues
MKKASDPPQPDPQDALAALQQKLAGLGESSMRKSYYPELQERLEELERFKALLDHSNESIFLIEVSTGRIVDLNDAASRQ
TGWSRDELLQQSLFDLSNLQQSPAAEALVRSPEETGSVRMLAVTELHRKDGGRFPAEITLNRMQFRENSYVLAVARDITQ
RKAMEEALRESEEFLKNIVDHIPAVVFAKEVQGLRFVTINKACQEVFGLSRAEVLGRTNYDLFPKEQAEFFTKMDRETLA
KGELVEVPEETITTANGDRILRVKKIPLFDNQGKERFLLGIAEDITERKQLEEKLLQSQKMEAIGQLAGGVAHDFNNILM
VILGYGSILLNEGALPARQKEQVEQIMNAADKAAKLTSDLLAFSRKQVIKPATMNLNDIILHVEKFLSRIIGEDVQLKAR
LAPRELQVDVDRGQIEQVLINLATNARDAMPKGGLLTIETSSLQIDEAFVQANGIGAPGPYAVISISDTGVGMDEQTRRR
IFEPFFTTKIVGKGTGLGMSIVYGIIQQHNGFVNVYSEPQLGTTFRIYLPFSEKSADRALEPQAPDTPPGGVETILVVED
EPDLRLLLQNILSGAGYRVLLAENGQVAVEQYAAGARGEIALVLMDMIMPGMSGKEACHAIRAIEPAAKVLYTSGYTMDI
IKSRDLLEEGTELLMKPVRPLELLKKVREMLDR

Sequences:

>Translated_673_residues
MKKASDPPQPDPQDALAALQQKLAGLGESSMRKSYYPELQERLEELERFKALLDHSNESIFLIEVSTGRIVDLNDAASRQ
TGWSRDELLQQSLFDLSNLQQSPAAEALVRSPEETGSVRMLAVTELHRKDGGRFPAEITLNRMQFRENSYVLAVARDITQ
RKAMEEALRESEEFLKNIVDHIPAVVFAKEVQGLRFVTINKACQEVFGLSRAEVLGRTNYDLFPKEQAEFFTKMDRETLA
KGELVEVPEETITTANGDRILRVKKIPLFDNQGKERFLLGIAEDITERKQLEEKLLQSQKMEAIGQLAGGVAHDFNNILM
VILGYGSILLNEGALPARQKEQVEQIMNAADKAAKLTSDLLAFSRKQVIKPATMNLNDIILHVEKFLSRIIGEDVQLKAR
LAPRELQVDVDRGQIEQVLINLATNARDAMPKGGLLTIETSSLQIDEAFVQANGIGAPGPYAVISISDTGVGMDEQTRRR
IFEPFFTTKIVGKGTGLGMSIVYGIIQQHNGFVNVYSEPQLGTTFRIYLPFSEKSADRALEPQAPDTPPGGVETILVVED
EPDLRLLLQNILSGAGYRVLLAENGQVAVEQYAAGARGEIALVLMDMIMPGMSGKEACHAIRAIEPAAKVLYTSGYTMDI
IKSRDLLEEGTELLMKPVRPLELLKKVREMLDR
>Mature_673_residues
MKKASDPPQPDPQDALAALQQKLAGLGESSMRKSYYPELQERLEELERFKALLDHSNESIFLIEVSTGRIVDLNDAASRQ
TGWSRDELLQQSLFDLSNLQQSPAAEALVRSPEETGSVRMLAVTELHRKDGGRFPAEITLNRMQFRENSYVLAVARDITQ
RKAMEEALRESEEFLKNIVDHIPAVVFAKEVQGLRFVTINKACQEVFGLSRAEVLGRTNYDLFPKEQAEFFTKMDRETLA
KGELVEVPEETITTANGDRILRVKKIPLFDNQGKERFLLGIAEDITERKQLEEKLLQSQKMEAIGQLAGGVAHDFNNILM
VILGYGSILLNEGALPARQKEQVEQIMNAADKAAKLTSDLLAFSRKQVIKPATMNLNDIILHVEKFLSRIIGEDVQLKAR
LAPRELQVDVDRGQIEQVLINLATNARDAMPKGGLLTIETSSLQIDEAFVQANGIGAPGPYAVISISDTGVGMDEQTRRR
IFEPFFTTKIVGKGTGLGMSIVYGIIQQHNGFVNVYSEPQLGTTFRIYLPFSEKSADRALEPQAPDTPPGGVETILVVED
EPDLRLLLQNILSGAGYRVLLAENGQVAVEQYAAGARGEIALVLMDMIMPGMSGKEACHAIRAIEPAAKVLYTSGYTMDI
IKSRDLLEEGTELLMKPVRPLELLKKVREMLDR

Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=379, Percent_Identity=30.3430079155673, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1790436, Length=252, Percent_Identity=31.3492063492063, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI48994928, Length=533, Percent_Identity=23.4521575984991, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI145693157, Length=276, Percent_Identity=25, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI1788713, Length=494, Percent_Identity=23.2793522267206, Blast_Score=76, Evalue=9e-15,
Organism=Escherichia coli, GI1790300, Length=341, Percent_Identity=26.6862170087977, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI1790346, Length=254, Percent_Identity=25.9842519685039, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI87081816, Length=350, Percent_Identity=22.5714285714286, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786912, Length=275, Percent_Identity=25.4545454545455, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR011006
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 74771; Mature: 74771

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKASDPPQPDPQDALAALQQKLAGLGESSMRKSYYPELQERLEELERFKALLDHSNESI
CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEE
FLIEVSTGRIVDLNDAASRQTGWSRDELLQQSLFDLSNLQQSPAAEALVRSPEETGSVRM
EEEEECCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEE
LAVTELHRKDGGRFPAEITLNRMQFRENSYVLAVARDITQRKAMEEALRESEEFLKNIVD
EEHHHHHHHCCCCCCHHEEHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
HIPAVVFAKEVQGLRFVTINKACQEVFGLSRAEVLGRTNYDLFPKEQAEFFTKMDRETLA
HHHHHHHHHHHCCCEEEEHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
KGELVEVPEETITTANGDRILRVKKIPLFDNQGKERFLLGIAEDITERKQLEEKLLQSQK
CCCEEECCHHHHCCCCCCEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHH
MEAIGQLAGGVAHDFNNILMVILGYGSILLNEGALPARQKEQVEQIMNAADKAAKLTSDL
HHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LAFSRKQVIKPATMNLNDIILHVEKFLSRIIGEDVQLKARLAPRELQVDVDRGQIEQVLI
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEECCHHHHHHHHH
NLATNARDAMPKGGLLTIETSSLQIDEAFVQANGIGAPGPYAVISISDTGVGMDEQTRRR
HHHCCHHHCCCCCCEEEEECCCEEHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHHH
IFEPFFTTKIVGKGTGLGMSIVYGIIQQHNGFVNVYSEPQLGTTFRIYLPFSEKSADRAL
HHHHHHHHEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCCCCCC
EPQAPDTPPGGVETILVVEDEPDLRLLLQNILSGAGYRVLLAENGQVAVEQYAAGARGEI
CCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCEEHHHHCCCCCCCH
ALVLMDMIMPGMSGKEACHAIRAIEPAAKVLYTSGYTMDIIKSRDLLEEGTELLMKPVRP
HHHHHHHHCCCCCCHHHHHHHHHHCHHHHHEECCCCEEEHHHHHHHHHHHHHHHHCCCCH
LELLKKVREMLDR
HHHHHHHHHHHCC
>Mature Secondary Structure
MKKASDPPQPDPQDALAALQQKLAGLGESSMRKSYYPELQERLEELERFKALLDHSNESI
CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEE
FLIEVSTGRIVDLNDAASRQTGWSRDELLQQSLFDLSNLQQSPAAEALVRSPEETGSVRM
EEEEECCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEE
LAVTELHRKDGGRFPAEITLNRMQFRENSYVLAVARDITQRKAMEEALRESEEFLKNIVD
EEHHHHHHHCCCCCCHHEEHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
HIPAVVFAKEVQGLRFVTINKACQEVFGLSRAEVLGRTNYDLFPKEQAEFFTKMDRETLA
HHHHHHHHHHHCCCEEEEHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
KGELVEVPEETITTANGDRILRVKKIPLFDNQGKERFLLGIAEDITERKQLEEKLLQSQK
CCCEEECCHHHHCCCCCCEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHH
MEAIGQLAGGVAHDFNNILMVILGYGSILLNEGALPARQKEQVEQIMNAADKAAKLTSDL
HHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LAFSRKQVIKPATMNLNDIILHVEKFLSRIIGEDVQLKARLAPRELQVDVDRGQIEQVLI
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEECCHHHHHHHHH
NLATNARDAMPKGGLLTIETSSLQIDEAFVQANGIGAPGPYAVISISDTGVGMDEQTRRR
HHHCCHHHCCCCCCEEEEECCCEEHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHHH
IFEPFFTTKIVGKGTGLGMSIVYGIIQQHNGFVNVYSEPQLGTTFRIYLPFSEKSADRAL
HHHHHHHHEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCCCCCC
EPQAPDTPPGGVETILVVEDEPDLRLLLQNILSGAGYRVLLAENGQVAVEQYAAGARGEI
CCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCEEHHHHCCCCCCCH
ALVLMDMIMPGMSGKEACHAIRAIEPAAKVLYTSGYTMDIIKSRDLLEEGTELLMKPVRP
HHHHHHHHCCCCCCHHHHHHHHHHCHHHHHEECCCCEEEHHHHHHHHHHHHHHHHCCCCH
LELLKKVREMLDR
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA