| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is arnT2 [H]
Identifier: 197120226
GI number: 197120226
Start: 4402081
End: 4403703
Strand: Direct
Name: arnT2 [H]
Synonym: Gbem_3865
Alternate gene names: 197120226
Gene position: 4402081-4403703 (Clockwise)
Preceding gene: 197120225
Following gene: 197120230
Centisome position: 95.38
GC content: 63.59
Gene sequence:
>1623_bases ATGTCTCATGCGCCACAAGCTAAGGGGCTCTGGCTCCCCTTCCTGATCCTGGCCGGGACCTGCCTCCTTTTCTCGCTGGC ACTCCCCTTCTTCCCCGTGGACGAGACCCGCTACCTCTCCGTGGCCTGGGAGATGAGGGTGCACGACTCCTTCATCGTCC CGATCCAGAACGCGCTCCCCTATTCGCACAAGCCCCCCCTGCTCTTCTGGCTGATCAATCTGGACTGGCTGCTCTTCGGG GTCAATGAGGGGACGCTCCGCTTCATCCCGCTCATCTTCAGCCTTTTCAACGTCTGCCTGGTGTACCGGATCGCCTTGCA GCTCTGGGAGGACCGCAAGCTCGCGCTGAACGCCGCCGTGATCCTAGGCTCCACCTTCTCTTACCTCCTCTGGTCCTCGG TGATCATGTTCGACGTGATCCTCTCCTTCTGGGTCCTCGTAGCCGTCTCCGCCTTCATCCGCGCCGGCAGGGAAAGGAGA TTCGCCGATTTCGCCCTGGCGGGCGCGGCCATAGGAGGGGGGTTCCTTACCAAGGGGCCGGTGGTGCTGGTCTACATCCT CCCGGTGGCGCTCTTCGCCTTCTGGTGGCAGCCCAAAGGCGAGGTCACTCCCAAGTGGTACGGCTTTTTGCTCCTCTCCC TGCTGATAGGTATCGCGGTTGTCCTCGCCTGGCTCATCCCGGCGGCGCTCACGGGGGGGGAGGTTTACCGCAAGGCGATC CTGTGGGGGCAGACGGTGAACCGCATGGCCAACTCCTTCGCCCATAAAAGGCCGCTTTGGTGGTATTTGCAGTGGGTCCC GGCACTGCTGGCTCCCTGGATCTTCTTCGCCCCCCTCTGGCGCGGCTGCCGCCGCCTGACCCTGGATGCCGGAACCAGAG TGGTGTTCACCTGGATCGTTTCCGGTTTCGTCGTTTTCTCCTTTTTGAGCGGGAAGCAGGTGCACTACCTCATCCCCCTG ATCCCCGCCTGCAGCCTGTTGGCGGCGAAGGCGATCGCCTGCTCTCAGGATTCCGCACGGAGGTTCCAGCTCCCGATTGC CATCTTCTACCTGATCCTCGGCGCAGCCATCGTCGCGCTCACCTTCCTGAAGCAGAGGGGCGCGCTGCAATATTTCGATC CCGGCGAGCTGAGAATCGCCGCTGCCGGCCTCATGCTCCTCGGCGCGGCGCTCTCCTTCCCAAGACCACGCGACGTTTCG GCGGCACTCAGGCTGGTGGCGGTCTCAGCGCTCCCCTTCTGCGCCCTGGTGGCGGTCGGCTGCCAAACCTTCTCCGGGCG CTACGACCTCCACGCGGTATCCGCGGCGGTACTAAAGAAGCAGCAGGAAGGCTACCAAGTGCTGCACCAGGGGAAATACC ACGGCCAGTACCATTTCATGGGGCGGCTGCAGCTGCCGCTGGTGGAACTGGAGGGAAGCGACCAGATCCGGCGCTACGCA CAGACCCACGACAAGGTGGCGCTGGTCAGCTACACCCCTCCGGGCCAGGCGGTGCAGCCTGAAGAGGCCTTCTTCCGGCA GCCGTTCAGGAGCAAGCAGGTGGTCCTTTGGAACAGCCGGGGGATCATGCAGAACCTCGACGGCGCCAAAGCCGCCGCAC CCCTGCACCAAGGGGAACAATAA
Upstream 100 bases:
>100_bases TACTCGCTCTACCGCAAGGACCCGGTCTTCATCCTGGGACAGGCCTTCGGCACCACGGTCTACCTCCGAAACCTCTTCTT CATCCACAAGGAAAAGAAAG
Downstream 100 bases:
>100_bases AAAAAGGCCCGCCAACTTCAGTTGACGGGCCTTTTCTGCTACATGCCGAGGATCAATCACCGGTACCCTGCTTCCTTCCA GGCGTTCAGACCACCCTTGA
Product: glycosyltransferase
Products: NA
Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase 2; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase 2 [H]
Number of amino acids: Translated: 540; Mature: 539
Protein sequence:
>540_residues MSHAPQAKGLWLPFLILAGTCLLFSLALPFFPVDETRYLSVAWEMRVHDSFIVPIQNALPYSHKPPLLFWLINLDWLLFG VNEGTLRFIPLIFSLFNVCLVYRIALQLWEDRKLALNAAVILGSTFSYLLWSSVIMFDVILSFWVLVAVSAFIRAGRERR FADFALAGAAIGGGFLTKGPVVLVYILPVALFAFWWQPKGEVTPKWYGFLLLSLLIGIAVVLAWLIPAALTGGEVYRKAI LWGQTVNRMANSFAHKRPLWWYLQWVPALLAPWIFFAPLWRGCRRLTLDAGTRVVFTWIVSGFVVFSFLSGKQVHYLIPL IPACSLLAAKAIACSQDSARRFQLPIAIFYLILGAAIVALTFLKQRGALQYFDPGELRIAAAGLMLLGAALSFPRPRDVS AALRLVAVSALPFCALVAVGCQTFSGRYDLHAVSAAVLKKQQEGYQVLHQGKYHGQYHFMGRLQLPLVELEGSDQIRRYA QTHDKVALVSYTPPGQAVQPEEAFFRQPFRSKQVVLWNSRGIMQNLDGAKAAAPLHQGEQ
Sequences:
>Translated_540_residues MSHAPQAKGLWLPFLILAGTCLLFSLALPFFPVDETRYLSVAWEMRVHDSFIVPIQNALPYSHKPPLLFWLINLDWLLFG VNEGTLRFIPLIFSLFNVCLVYRIALQLWEDRKLALNAAVILGSTFSYLLWSSVIMFDVILSFWVLVAVSAFIRAGRERR FADFALAGAAIGGGFLTKGPVVLVYILPVALFAFWWQPKGEVTPKWYGFLLLSLLIGIAVVLAWLIPAALTGGEVYRKAI LWGQTVNRMANSFAHKRPLWWYLQWVPALLAPWIFFAPLWRGCRRLTLDAGTRVVFTWIVSGFVVFSFLSGKQVHYLIPL IPACSLLAAKAIACSQDSARRFQLPIAIFYLILGAAIVALTFLKQRGALQYFDPGELRIAAAGLMLLGAALSFPRPRDVS AALRLVAVSALPFCALVAVGCQTFSGRYDLHAVSAAVLKKQQEGYQVLHQGKYHGQYHFMGRLQLPLVELEGSDQIRRYA QTHDKVALVSYTPPGQAVQPEEAFFRQPFRSKQVVLWNSRGIMQNLDGAKAAAPLHQGEQ >Mature_539_residues SHAPQAKGLWLPFLILAGTCLLFSLALPFFPVDETRYLSVAWEMRVHDSFIVPIQNALPYSHKPPLLFWLINLDWLLFGV NEGTLRFIPLIFSLFNVCLVYRIALQLWEDRKLALNAAVILGSTFSYLLWSSVIMFDVILSFWVLVAVSAFIRAGRERRF ADFALAGAAIGGGFLTKGPVVLVYILPVALFAFWWQPKGEVTPKWYGFLLLSLLIGIAVVLAWLIPAALTGGEVYRKAIL WGQTVNRMANSFAHKRPLWWYLQWVPALLAPWIFFAPLWRGCRRLTLDAGTRVVFTWIVSGFVVFSFLSGKQVHYLIPLI PACSLLAAKAIACSQDSARRFQLPIAIFYLILGAAIVALTFLKQRGALQYFDPGELRIAAAGLMLLGAALSFPRPRDVSA ALRLVAVSALPFCALVAVGCQTFSGRYDLHAVSAAVLKKQQEGYQVLHQGKYHGQYHFMGRLQLPLVELEGSDQIRRYAQ THDKVALVSYTPPGQAVQPEEAFFRQPFRSKQVVLWNSRGIMQNLDGAKAAAPLHQGEQ
Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 83 family [H]
Homologues:
Organism=Escherichia coli, GI1788591, Length=307, Percent_Identity=27.3615635179153, Blast_Score=86, Evalue=6e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022839 - InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: =2.4.2.43 [H]
Molecular weight: Translated: 60364; Mature: 60233
Theoretical pI: Translated: 10.09; Mature: 10.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHAPQAKGLWLPFLILAGTCLLFSLALPFFPVDETRYLSVAWEMRVHDSFIVPIQNALP CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCEEEEEHHCCC YSHKPPLLFWLINLDWLLFGVNEGTLRFIPLIFSLFNVCLVYRIALQLWEDRKLALNAAV CCCCCCEEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH ILGSTFSYLLWSSVIMFDVILSFWVLVAVSAFIRAGRERRFADFALAGAAIGGGFLTKGP HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCH VVLVYILPVALFAFWWQPKGEVTPKWYGFLLLSLLIGIAVVLAWLIPAALTGGEVYRKAI HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LWGQTVNRMANSFAHKRPLWWYLQWVPALLAPWIFFAPLWRGCRRLTLDAGTRVVFTWIV HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHH SGFVVFSFLSGKQVHYLIPLIPACSLLAAKAIACSQDSARRFQLPIAIFYLILGAAIVAL HHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCHHEEHHHHHHHHHHHHHHHHH TFLKQRGALQYFDPGELRIAAAGLMLLGAALSFPRPRDVSAALRLVAVSALPFCALVAVG HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH CQTFSGRYDLHAVSAAVLKKQQEGYQVLHQGKYHGQYHFMGRLQLPLVELEGSDQIRRYA HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEECCCHHHHHHH QTHDKVALVSYTPPGQAVQPEEAFFRQPFRSKQVVLWNSRGIMQNLDGAKAAAPLHQGEQ HCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCEEEEECCCCHHHCCCCCHHHCCCCCCCC >Mature Secondary Structure SHAPQAKGLWLPFLILAGTCLLFSLALPFFPVDETRYLSVAWEMRVHDSFIVPIQNALP CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCEEEEEHHCCC YSHKPPLLFWLINLDWLLFGVNEGTLRFIPLIFSLFNVCLVYRIALQLWEDRKLALNAAV CCCCCCEEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH ILGSTFSYLLWSSVIMFDVILSFWVLVAVSAFIRAGRERRFADFALAGAAIGGGFLTKGP HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCH VVLVYILPVALFAFWWQPKGEVTPKWYGFLLLSLLIGIAVVLAWLIPAALTGGEVYRKAI HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LWGQTVNRMANSFAHKRPLWWYLQWVPALLAPWIFFAPLWRGCRRLTLDAGTRVVFTWIV HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHH SGFVVFSFLSGKQVHYLIPLIPACSLLAAKAIACSQDSARRFQLPIAIFYLILGAAIVAL HHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCHHEEHHHHHHHHHHHHHHHHH TFLKQRGALQYFDPGELRIAAAGLMLLGAALSFPRPRDVSAALRLVAVSALPFCALVAVG HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH CQTFSGRYDLHAVSAAVLKKQQEGYQVLHQGKYHGQYHFMGRLQLPLVELEGSDQIRRYA HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEECCCHHHHHHH QTHDKVALVSYTPPGQAVQPEEAFFRQPFRSKQVVLWNSRGIMQNLDGAKAAAPLHQGEQ HCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCEEEEECCCCHHHCCCCCHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA