Definition Geobacter bemidjiensis Bem chromosome, complete genome.
Accession NC_011146
Length 4,615,150

Click here to switch to the map view.

The map label for this gene is 197120230

Identifier: 197120230

GI number: 197120230

Start: 4407118

End: 4407483

Strand: Direct

Name: 197120230

Synonym: Gbem_3869

Alternate gene names: NA

Gene position: 4407118-4407483 (Clockwise)

Preceding gene: 197120226

Following gene: 197120231

Centisome position: 95.49

GC content: 63.66

Gene sequence:

>366_bases
ATGAGGCTTTCCCGAAACAGCGACGAACCGCTCAACTACGCGGTAGACCAGCAGTCGAACCTCACCCCGCAGTTGCGGCG
GATGAACCTGAAGCTTGGCCTGGAGACGGCGCTGGGGGTCGTTTCCGACCCTCCGGCCACGCTGCTTCTGGGCGGGGCAG
TCGCCTTGCTCCTCAAACGCAGGTTCGCGCTCGCCTCTCTCTGCGCCGCCGGCTTTCTGCTCCGGCAGACGATAACCAAG
CGCCCGACCGTGCCGAGGTGGCGCTTGCTCACCGCCAGGGAAAGAAGAGAGATCGAGTTCGAGCGGAGCGTCTTGAAGGC
ACAGCGTGGCGACTACGGCAATCTCGAGGTCATCGCCTTCAAGTGA

Upstream 100 bases:

>100_bases
AAAATAGCGTCGAGTCGTTGAGGAAGGGGCCGACACTGCTAAGATAACCTTCGGCTTGTGCAACAAAGCATGTCGCGACA
CGAACCAAAGGAGGGATACG

Downstream 100 bases:

>100_bases
CCCGGCGCAAAGGGGACAGGCTGCTTTTGAAAGTAGCCTGTCCCTCTTTAATTTCGCTACAGTCTCGCCGCGGCTGCGCC
GATAGGGTCGGTAAGGAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MRLSRNSDEPLNYAVDQQSNLTPQLRRMNLKLGLETALGVVSDPPATLLLGGAVALLLKRRFALASLCAAGFLLRQTITK
RPTVPRWRLLTARERREIEFERSVLKAQRGDYGNLEVIAFK

Sequences:

>Translated_121_residues
MRLSRNSDEPLNYAVDQQSNLTPQLRRMNLKLGLETALGVVSDPPATLLLGGAVALLLKRRFALASLCAAGFLLRQTITK
RPTVPRWRLLTARERREIEFERSVLKAQRGDYGNLEVIAFK
>Mature_121_residues
MRLSRNSDEPLNYAVDQQSNLTPQLRRMNLKLGLETALGVVSDPPATLLLGGAVALLLKRRFALASLCAAGFLLRQTITK
RPTVPRWRLLTARERREIEFERSVLKAQRGDYGNLEVIAFK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13632; Mature: 13632

Theoretical pI: Translated: 11.40; Mature: 11.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLSRNSDEPLNYAVDQQSNLTPQLRRMNLKLGLETALGVVSDPPATLLLGGAVALLLKR
CCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHH
RFALASLCAAGFLLRQTITKRPTVPRWRLLTARERREIEFERSVLKAQRGDYGNLEVIAF
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
K
C
>Mature Secondary Structure
MRLSRNSDEPLNYAVDQQSNLTPQLRRMNLKLGLETALGVVSDPPATLLLGGAVALLLKR
CCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHH
RFALASLCAAGFLLRQTITKRPTVPRWRLLTARERREIEFERSVLKAQRGDYGNLEVIAF
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA