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The map label for this gene is yibD [C]

Identifier: 197120100

GI number: 197120100

Start: 4265997

End: 4268102

Strand: Direct

Name: yibD [C]

Synonym: Gbem_3739

Alternate gene names: 197120100

Gene position: 4265997-4268102 (Clockwise)

Preceding gene: 197120099

Following gene: 197120101

Centisome position: 92.43

GC content: 64.15

Gene sequence:

>2106_bases
ATGATCATCATCGGCAACTCCAACGTGAACACCTTCAAACAGCAGGGGGTCGTCGCCGCGACCGACGCCGAGAAGGTCTC
GGTGCTCTGGGTGGGCGCCCTTACCGCCTCGGACTTCCGCACCGACCACCCGGCGGCGCACAAGGTGCGCGCCATCTTCT
CCGGCAACAAGGAGTGGAAGTTCCTGAGCATCGGGACCCACGACATCCACGAACTCTGCGCCGCCGCCGCGATGCAGCGG
CTGGACGAGGCCTTCGCCAACCTGAACGAGTTCTACAGGAAGCTCTTCCGCGAGTTCGCCGCCTCGGGGAACTTCGGCTG
GCTCATCTTCCCCTTCCCCGCGCAAGAGATCACCTTACCCAACGTCACTGCCGATGAGATCCTCGGCATCGCGAGTAACT
TCTACAACCAGATCAAAAAGTGGTGCCAGGAGGAGGGGATCCCGGTCATCGACCCGCACCAGCGGATCCTCGGCGCCGAC
GGCCAGCCCCTGCCGCACCTGCTGCAAAAAGACGGCATCCACCTGAACGTGGAGGCGGCCCGGATCTACCTGGAGGAGAT
CTCCGCCTTGACCGGGACGCCGCTTCGGTTCCAGGGGGAAGGCCCCGTTTTCGAGCCTGCCGACGAGCCGGAATCGTTCG
CATCGCTGCTACTGAACGCGCTCGACGTCCCCCACCGGCGCGGGGCGAACCTGGATGGGCTAGAGGAGCGCCTGATCGGA
TTCGTGGGGGAGCTTTTGCGCGGCAAGGGGCTGGAACTCGAGGTCGACGCGGAGACGGAGCTGGTCGACTCGGGGCTGCT
CGACTCCCTGAACCTCGTCGAGACCTACACCTTCGCCGTGAACAGCGTCGGGATGGAGATCGTCTACGACGTCGACCTGA
GAACGCTCGACACGGTGCAAAAGATCTGCTGCTTCATCGCCGAACATGGGGGCGGCGAGGAGCCCGACGGTCCCACCTTC
GAGGATTTCATCACTTCCATGCGGGGGGATTTCTGCGACCCCGCCCAAAGAGACGCCATCGAGGCGGCCGACTACCGGAT
CGCCACCATGAATAAAGAGCGGGTGCAGGAGTTCATCCGCCACTTCGAGATCGTCTCCTACAGCTTCAACTGCAACTACG
GAATCATCTACTTCTGGCTTTCGCTCTTCGCCGCCAACAACCGCAACTACGGCACCGCGCTCGAGCTTTTGCGCCACGGC
AGCACCGCCGATCTGGTCTACCCGGTGACCGGGGAGCACGTGCAGCACTACCTCGAGCGCTGGGAGAAGCTCCAAAACCT
CGGCAGTGCGGCGCCGCAGCAAGAGGTGGCGCGGCAGCAAGAGGTGGCGCCGCAGCAAGCCGTGTTGCCGCCGCGCATCT
CCGTGGTGATCCCGTCCTACAACTACGGCCGCTACCTCGAGACCTGCCTGGATTCGATCCTGTCCCAGAACTACCCGAAC
CTGGAGCTCCTGGTCCTGGACGGCGGGAGCAGCGACAACACCGTCGAGATACTCAAGCGCTACGACAAGCACTTAGCCTT
CTGGCGCAGCTGCCCCGACGCCGGGCAGTACAGCGCCATCGAAGAGGGACTGAACCGGGCAAGCGGCGAGATCATGACCT
GGCTCAATGCCGACGACATGTTCCACCCCGGCGCCTTCGACGCCGTCTCCCGCATCTTCATGACCTCCGCCGAGGTGGAG
TGGCTCATGGGCAGGCCCAACAGCTTTGACGAGGCGGGGAGGCAAAAGCACGTGCACAGCTACCTTCCGCTCAACTCGCG
CGCCAAGTACCTGGCGGACGAGGAGTTCATCCAGCAGGAGGGGGTTTTCTGGCGCCGCGGGCTCTGGGAAAGAAGCGGGG
CCTGCATCGACCGGGAGCTGCCGCTTGCGGCCGATCTGGAGCTTTGGGCCCGCTTCTTCAGAAGCGCCAGGCTCTTCTCG
GTAGACGCGCTCATCGCCGGTTTCCGCGACCACCCGTTGCAGAAATCCAAGGACAAGGCTGGTTACACGGCCGAGGCGAA
CCGGGTGCTGGCGCGGGAAAAGGCGCTCTTCGTGCGCGAGCCGCGCCCCTTCTCTCCCCCCGCACCGCTCCCCATCCTCC
TGGACGGGGACAAGGTCATCCTGTGA

Upstream 100 bases:

>100_bases
TCGAGGTGGTGGAGCATATGACGCTGGTCAAGACCTCGAGCGGCAAGATCTCCCGCTCCCGCAACAAGGAACTCTACCAG
GGCAAAGGTTTCCAACTTCT

Downstream 100 bases:

>100_bases
AGGGCTCCGGGAAAAAGTACCTGGTCTCCGCCATCGTCTCCACCTATAAGGCGGAACGCTTCCTGCGCGGCAAGCTTGAG
GACCTGGAGGCGCAGACCAT

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 701; Mature: 701

Protein sequence:

>701_residues
MIIIGNSNVNTFKQQGVVAATDAEKVSVLWVGALTASDFRTDHPAAHKVRAIFSGNKEWKFLSIGTHDIHELCAAAAMQR
LDEAFANLNEFYRKLFREFAASGNFGWLIFPFPAQEITLPNVTADEILGIASNFYNQIKKWCQEEGIPVIDPHQRILGAD
GQPLPHLLQKDGIHLNVEAARIYLEEISALTGTPLRFQGEGPVFEPADEPESFASLLLNALDVPHRRGANLDGLEERLIG
FVGELLRGKGLELEVDAETELVDSGLLDSLNLVETYTFAVNSVGMEIVYDVDLRTLDTVQKICCFIAEHGGGEEPDGPTF
EDFITSMRGDFCDPAQRDAIEAADYRIATMNKERVQEFIRHFEIVSYSFNCNYGIIYFWLSLFAANNRNYGTALELLRHG
STADLVYPVTGEHVQHYLERWEKLQNLGSAAPQQEVARQQEVAPQQAVLPPRISVVIPSYNYGRYLETCLDSILSQNYPN
LELLVLDGGSSDNTVEILKRYDKHLAFWRSCPDAGQYSAIEEGLNRASGEIMTWLNADDMFHPGAFDAVSRIFMTSAEVE
WLMGRPNSFDEAGRQKHVHSYLPLNSRAKYLADEEFIQQEGVFWRRGLWERSGACIDRELPLAADLELWARFFRSARLFS
VDALIAGFRDHPLQKSKDKAGYTAEANRVLAREKALFVREPRPFSPPAPLPILLDGDKVIL

Sequences:

>Translated_701_residues
MIIIGNSNVNTFKQQGVVAATDAEKVSVLWVGALTASDFRTDHPAAHKVRAIFSGNKEWKFLSIGTHDIHELCAAAAMQR
LDEAFANLNEFYRKLFREFAASGNFGWLIFPFPAQEITLPNVTADEILGIASNFYNQIKKWCQEEGIPVIDPHQRILGAD
GQPLPHLLQKDGIHLNVEAARIYLEEISALTGTPLRFQGEGPVFEPADEPESFASLLLNALDVPHRRGANLDGLEERLIG
FVGELLRGKGLELEVDAETELVDSGLLDSLNLVETYTFAVNSVGMEIVYDVDLRTLDTVQKICCFIAEHGGGEEPDGPTF
EDFITSMRGDFCDPAQRDAIEAADYRIATMNKERVQEFIRHFEIVSYSFNCNYGIIYFWLSLFAANNRNYGTALELLRHG
STADLVYPVTGEHVQHYLERWEKLQNLGSAAPQQEVARQQEVAPQQAVLPPRISVVIPSYNYGRYLETCLDSILSQNYPN
LELLVLDGGSSDNTVEILKRYDKHLAFWRSCPDAGQYSAIEEGLNRASGEIMTWLNADDMFHPGAFDAVSRIFMTSAEVE
WLMGRPNSFDEAGRQKHVHSYLPLNSRAKYLADEEFIQQEGVFWRRGLWERSGACIDRELPLAADLELWARFFRSARLFS
VDALIAGFRDHPLQKSKDKAGYTAEANRVLAREKALFVREPRPFSPPAPLPILLDGDKVIL
>Mature_701_residues
MIIIGNSNVNTFKQQGVVAATDAEKVSVLWVGALTASDFRTDHPAAHKVRAIFSGNKEWKFLSIGTHDIHELCAAAAMQR
LDEAFANLNEFYRKLFREFAASGNFGWLIFPFPAQEITLPNVTADEILGIASNFYNQIKKWCQEEGIPVIDPHQRILGAD
GQPLPHLLQKDGIHLNVEAARIYLEEISALTGTPLRFQGEGPVFEPADEPESFASLLLNALDVPHRRGANLDGLEERLIG
FVGELLRGKGLELEVDAETELVDSGLLDSLNLVETYTFAVNSVGMEIVYDVDLRTLDTVQKICCFIAEHGGGEEPDGPTF
EDFITSMRGDFCDPAQRDAIEAADYRIATMNKERVQEFIRHFEIVSYSFNCNYGIIYFWLSLFAANNRNYGTALELLRHG
STADLVYPVTGEHVQHYLERWEKLQNLGSAAPQQEVARQQEVAPQQAVLPPRISVVIPSYNYGRYLETCLDSILSQNYPN
LELLVLDGGSSDNTVEILKRYDKHLAFWRSCPDAGQYSAIEEGLNRASGEIMTWLNADDMFHPGAFDAVSRIFMTSAEVE
WLMGRPNSFDEAGRQKHVHSYLPLNSRAKYLADEEFIQQEGVFWRRGLWERSGACIDRELPLAADLELWARFFRSARLFS
VDALIAGFRDHPLQKSKDKAGYTAEANRVLAREKALFVREPRPFSPPAPLPILLDGDKVIL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=100, Percent_Identity=33, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 78738; Mature: 78738

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIIGNSNVNTFKQQGVVAATDAEKVSVLWVGALTASDFRTDHPAAHKVRAIFSGNKEWK
CEEECCCCCCHHHHCCEEEECCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEE
FLSIGTHDIHELCAAAAMQRLDEAFANLNEFYRKLFREFAASGNFGWLIFPFPAQEITLP
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECC
NVTADEILGIASNFYNQIKKWCQEEGIPVIDPHQRILGADGQPLPHLLQKDGIHLNVEAA
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHCCCEEEHHHH
RIYLEEISALTGTPLRFQGEGPVFEPADEPESFASLLLNALDVPHRRGANLDGLEERLIG
HHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
FVGELLRGKGLELEVDAETELVDSGLLDSLNLVETYTFAVNSVGMEIVYDVDLRTLDTVQ
HHHHHHCCCCCEEEECCCHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
KICCFIAEHGGGEEPDGPTFEDFITSMRGDFCDPAQRDAIEAADYRIATMNKERVQEFIR
HHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCEEEEECCHHHHHHHHH
HFEIVSYSFNCNYGIIYFWLSLFAANNRNYGTALELLRHGSTADLVYPVTGEHVQHYLER
HHHEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEECCCHHHHHHHHHH
WEKLQNLGSAAPQQEVARQQEVAPQQAVLPPRISVVIPSYNYGRYLETCLDSILSQNYPN
HHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC
LELLVLDGGSSDNTVEILKRYDKHLAFWRSCPDAGQYSAIEEGLNRASGEIMTWLNADDM
EEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC
FHPGAFDAVSRIFMTSAEVEWLMGRPNSFDEAGRQKHVHSYLPLNSRAKYLADEEFIQQE
CCCCHHHHHHHHHHHHCCHHEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
GVFWRRGLWERSGACIDRELPLAADLELWARFFRSARLFSVDALIAGFRDHPLQKSKDKA
CCHHHHCCHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCC
GYTAEANRVLAREKALFVREPRPFSPPAPLPILLDGDKVIL
CCCHHHHHHHHHHHHHEEECCCCCCCCCCCEEEECCCEEEC
>Mature Secondary Structure
MIIIGNSNVNTFKQQGVVAATDAEKVSVLWVGALTASDFRTDHPAAHKVRAIFSGNKEWK
CEEECCCCCCHHHHCCEEEECCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEE
FLSIGTHDIHELCAAAAMQRLDEAFANLNEFYRKLFREFAASGNFGWLIFPFPAQEITLP
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECC
NVTADEILGIASNFYNQIKKWCQEEGIPVIDPHQRILGADGQPLPHLLQKDGIHLNVEAA
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHCCCEEEHHHH
RIYLEEISALTGTPLRFQGEGPVFEPADEPESFASLLLNALDVPHRRGANLDGLEERLIG
HHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
FVGELLRGKGLELEVDAETELVDSGLLDSLNLVETYTFAVNSVGMEIVYDVDLRTLDTVQ
HHHHHHCCCCCEEEECCCHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
KICCFIAEHGGGEEPDGPTFEDFITSMRGDFCDPAQRDAIEAADYRIATMNKERVQEFIR
HHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCEEEEECCHHHHHHHHH
HFEIVSYSFNCNYGIIYFWLSLFAANNRNYGTALELLRHGSTADLVYPVTGEHVQHYLER
HHHEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEECCCHHHHHHHHHH
WEKLQNLGSAAPQQEVARQQEVAPQQAVLPPRISVVIPSYNYGRYLETCLDSILSQNYPN
HHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC
LELLVLDGGSSDNTVEILKRYDKHLAFWRSCPDAGQYSAIEEGLNRASGEIMTWLNADDM
EEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC
FHPGAFDAVSRIFMTSAEVEWLMGRPNSFDEAGRQKHVHSYLPLNSRAKYLADEEFIQQE
CCCCHHHHHHHHHHHHCCHHEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
GVFWRRGLWERSGACIDRELPLAADLELWARFFRSARLFSVDALIAGFRDHPLQKSKDKA
CCHHHHCCHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCC
GYTAEANRVLAREKALFVREPRPFSPPAPLPILLDGDKVIL
CCCHHHHHHHHHHHHHEEECCCCCCCCCCCEEEECCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]