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The map label for this gene is ytfH [H]

Identifier: 197119249

GI number: 197119249

Start: 3314215

End: 3314616

Strand: Reverse

Name: ytfH [H]

Synonym: Gbem_2876

Alternate gene names: 197119249

Gene position: 3314616-3314215 (Counterclockwise)

Preceding gene: 197119254

Following gene: 197119246

Centisome position: 71.82

GC content: 59.45

Gene sequence:

>402_bases
ATGATTGAATCCGAAGTCGTCACTCTGTCGGACCAGTTGCGCCGCGGAGAGCTGCTCTCCACACAGTGCCCGTCCCGGGA
GATCCTGAAGCATGTCACCAGCCAATGGGGAGTTCTCGTGCTGGTCGCACTGATGGAAGGGACGCACCGCTTCAGCGAGC
TGCGGCGCAAAGTGGGAGGAGTGAGTGAAAAGATGCTTGCGCAGACCCTCCAATATCTGGAGAGGGATGGATTCGTCGAC
CGGATTTCCTATCCGGTTGTGCCGCCTCACGTTGAATACTCGCTGACCCCGCTGGGAAGGGCCATAGGAGAGAAGGTAGA
GGCCCTGGCAGACTGGATCGAAAGCAACCTGCCGGCCATCATGGTGCTTAAGCGGACAGTGCACCCGGGAGCGGACAGGT
AG

Upstream 100 bases:

>100_bases
CATATGAGTATCTCCTTTATGTGTGCATGCGATCTGTGTTACAGGTGAAGCATAGCAACAACGATTACAAAAAGTAAGTA
CGCACAAAAAGGTAAGTGTC

Downstream 100 bases:

>100_bases
GGGGGCAAAGAGGTTGCGGCCTGAGACCCTTAGAACCATTGTCGCGGAATGTTGACAGGTTACAAGTTAAGGTGGGCCAG
GGTTAGACGCCGATGCAGGG

Product: HxlR-like transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MIESEVVTLSDQLRRGELLSTQCPSREILKHVTSQWGVLVLVALMEGTHRFSELRRKVGGVSEKMLAQTLQYLERDGFVD
RISYPVVPPHVEYSLTPLGRAIGEKVEALADWIESNLPAIMVLKRTVHPGADR

Sequences:

>Translated_133_residues
MIESEVVTLSDQLRRGELLSTQCPSREILKHVTSQWGVLVLVALMEGTHRFSELRRKVGGVSEKMLAQTLQYLERDGFVD
RISYPVVPPHVEYSLTPLGRAIGEKVEALADWIESNLPAIMVLKRTVHPGADR
>Mature_133_residues
MIESEVVTLSDQLRRGELLSTQCPSREILKHVTSQWGVLVLVALMEGTHRFSELRRKVGGVSEKMLAQTLQYLERDGFVD
RISYPVVPPHVEYSLTPLGRAIGEKVEALADWIESNLPAIMVLKRTVHPGADR

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=118, Percent_Identity=72.8813559322034, Blast_Score=190, Evalue=3e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 14949; Mature: 14949

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIESEVVTLSDQLRRGELLSTQCPSREILKHVTSQWGVLVLVALMEGTHRFSELRRKVGG
CCCCHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VSEKMLAQTLQYLERDGFVDRISYPVVPPHVEYSLTPLGRAIGEKVEALADWIESNLPAI
CHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHH
MVLKRTVHPGADR
HHHHHHCCCCCCC
>Mature Secondary Structure
MIESEVVTLSDQLRRGELLSTQCPSREILKHVTSQWGVLVLVALMEGTHRFSELRRKVGG
CCCCHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VSEKMLAQTLQYLERDGFVDRISYPVVPPHVEYSLTPLGRAIGEKVEALADWIESNLPAI
CHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHH
MVLKRTVHPGADR
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]