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The map label for this gene is lrrA [H]

Identifier: 197119254

GI number: 197119254

Start: 3319324

End: 3320262

Strand: Reverse

Name: lrrA [H]

Synonym: Gbem_2882

Alternate gene names: 197119254

Gene position: 3320262-3319324 (Counterclockwise)

Preceding gene: 197119257

Following gene: 197119249

Centisome position: 71.94

GC content: 47.18

Gene sequence:

>939_bases
ATGGACATCGAGTATCTACGAACAATCATTACGGTATTGCGGGAAAAGAGCTTTTCCAAAGCTGCTACTGCTCTTAACGT
GACCCAGTCGGCGGTTTCCCACCGGGTCAAGTTTCTCGAAGACCATTTCGGGGGGCGCCTGATCGATCGCTCCGGAACAG
AGCTGATGCCCACGGATATGGGCCTGCGGGTTTTAAAAAAGGCTGAGCGGATTGTGCAACTCGAAGATGATCTCATTGAG
GATGTTGCGAATTTGGGAGGGGATCGGACGCTGTCCATCGGCACCACTGTCGCGTTCGCTGTCAATCATATGTCGAACAT
CATGAATAATTCTTTTCTGTCTCATTCCGAAGGTGCAAATCTTAAGATTCTTGTTCAACACCCGAAAGCGCTGCTGGATG
GTTTGAAAGGCGGCTTTTTCGATATCACTGCGATTGAGCACAACGGTAATCTTGATTTCTCCGGTCTCAAAACATTTGAA
CTCCCTGACGATGAGATGGTTTTTATCAGTAACAGTGCTCCGGAGCTTACTTCATACGACTCCCCGCTCTCCTGGTTGCT
TGATAACCGGATAATCGCCCGTGTCGAAGGCTGCAGTTGCAGGGATATGCTTTCCGAAAACCTGAATAAATGCTCTCTGC
AACTGAGCGATTTCAAGGGAGTGATAGTATGTGATGATATGAAATTCATGATAGAGTCTGTGCTTACTGGACAGGGGATC
GCTTTTGTTTCTAAAGCCCTTGTTGTAGATCATCTAGACAAGAGACGGCTTGTGGCGCATAGCATCGAGGGATTCAATCA
TTTTAGAAGAATTACCGTCGCTATAAAGCAGGAGAAGTGCAATGACGACAAAATCAGGTCACTCCTTGGCGCGATTGTTG
ACATTACGAAAATCGCTGCGATTTCACCTTTTCTCTGGCTCCCGTTACTACAGAGTTAG

Upstream 100 bases:

>100_bases
TTCTGTATCAATAATTTTCATGTATCCATTACGAAGGTTCATTGGCCGTTTCGGGTGAAAGGTTGCAAATTTTGGAACCA
CGGCAGGAGAGAGCGAAACT

Downstream 100 bases:

>100_bases
CCCACGCAGGGTGTCAATCCGCTTTGAAAGTTGACCCACCATCCGCGTCCAACATTGACCCACCCCAGGTAGCAGTTTTC
AGTTCTTGATTCTGGTCTTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MDIEYLRTIITVLREKSFSKAATALNVTQSAVSHRVKFLEDHFGGRLIDRSGTELMPTDMGLRVLKKAERIVQLEDDLIE
DVANLGGDRTLSIGTTVAFAVNHMSNIMNNSFLSHSEGANLKILVQHPKALLDGLKGGFFDITAIEHNGNLDFSGLKTFE
LPDDEMVFISNSAPELTSYDSPLSWLLDNRIIARVEGCSCRDMLSENLNKCSLQLSDFKGVIVCDDMKFMIESVLTGQGI
AFVSKALVVDHLDKRRLVAHSIEGFNHFRRITVAIKQEKCNDDKIRSLLGAIVDITKIAAISPFLWLPLLQS

Sequences:

>Translated_312_residues
MDIEYLRTIITVLREKSFSKAATALNVTQSAVSHRVKFLEDHFGGRLIDRSGTELMPTDMGLRVLKKAERIVQLEDDLIE
DVANLGGDRTLSIGTTVAFAVNHMSNIMNNSFLSHSEGANLKILVQHPKALLDGLKGGFFDITAIEHNGNLDFSGLKTFE
LPDDEMVFISNSAPELTSYDSPLSWLLDNRIIARVEGCSCRDMLSENLNKCSLQLSDFKGVIVCDDMKFMIESVLTGQGI
AFVSKALVVDHLDKRRLVAHSIEGFNHFRRITVAIKQEKCNDDKIRSLLGAIVDITKIAAISPFLWLPLLQS
>Mature_312_residues
MDIEYLRTIITVLREKSFSKAATALNVTQSAVSHRVKFLEDHFGGRLIDRSGTELMPTDMGLRVLKKAERIVQLEDDLIE
DVANLGGDRTLSIGTTVAFAVNHMSNIMNNSFLSHSEGANLKILVQHPKALLDGLKGGFFDITAIEHNGNLDFSGLKTFE
LPDDEMVFISNSAPELTSYDSPLSWLLDNRIIARVEGCSCRDMLSENLNKCSLQLSDFKGVIVCDDMKFMIESVLTGQGI
AFVSKALVVDHLDKRRLVAHSIEGFNHFRRITVAIKQEKCNDDKIRSLLGAIVDITKIAAISPFLWLPLLQS

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=84, Percent_Identity=39.2857142857143, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34664; Mature: 34664

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIEYLRTIITVLREKSFSKAATALNVTQSAVSHRVKFLEDHFGGRLIDRSGTELMPTDM
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHH
GLRVLKKAERIVQLEDDLIEDVANLGGDRTLSIGTTVAFAVNHMSNIMNNSFLSHSEGAN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCC
LKILVQHPKALLDGLKGGFFDITAIEHNGNLDFSGLKTFELPDDEMVFISNSAPELTSYD
EEEEEECCHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEECCCCCEEEEECCCCCCCCCC
SPLSWLLDNRIIARVEGCSCRDMLSENLNKCSLQLSDFKGVIVCDDMKFMIESVLTGQGI
CCHHHHHCCCCEEEECCCCHHHHHHCCHHHEEEEECCCCCEEEECCHHHHHHHHHCCCCH
AFVSKALVVDHLDKRRLVAHSIEGFNHFRRITVAIKQEKCNDDKIRSLLGAIVDITKIAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
ISPFLWLPLLQS
HCHHHHHHHHCC
>Mature Secondary Structure
MDIEYLRTIITVLREKSFSKAATALNVTQSAVSHRVKFLEDHFGGRLIDRSGTELMPTDM
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHH
GLRVLKKAERIVQLEDDLIEDVANLGGDRTLSIGTTVAFAVNHMSNIMNNSFLSHSEGAN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCC
LKILVQHPKALLDGLKGGFFDITAIEHNGNLDFSGLKTFELPDDEMVFISNSAPELTSYD
EEEEEECCHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEECCCCCEEEEECCCCCCCCCC
SPLSWLLDNRIIARVEGCSCRDMLSENLNKCSLQLSDFKGVIVCDDMKFMIESVLTGQGI
CCHHHHHCCCCEEEECCCCHHHHHHCCHHHEEEEECCCCCEEEECCHHHHHHHHHCCCCH
AFVSKALVVDHLDKRRLVAHSIEGFNHFRRITVAIKQEKCNDDKIRSLLGAIVDITKIAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
ISPFLWLPLLQS
HCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8661945 [H]