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The map label for this gene is bphB [H]

Identifier: 197119218

GI number: 197119218

Start: 3274459

End: 3276096

Strand: Reverse

Name: bphB [H]

Synonym: Gbem_2845

Alternate gene names: 197119218

Gene position: 3276096-3274459 (Counterclockwise)

Preceding gene: 197119223

Following gene: 197119216

Centisome position: 70.99

GC content: 62.15

Gene sequence:

>1638_bases
ATGCAAGACGACCTGACGCCGGAGCGGCGGGAGAAATTACCGAAGGCTCCACTCGACATCTCCCTGCCGGACCCAAAGGG
GGCCTTGTTACTGCAGGATCTGCAGCGCAGGCTGGCGCGGGTCGAGGCCGAGAATGCGCAGTTGCGCCGCGTCATCGAAT
CCCAGCGTTCCGACGAGGAGGGGTATCGCTCCCTCTACAACGACACTCCGGTCATGCTGCACTCCATCGACCGCAACGGG
CTGCTCCTGGGAGTCAGCAACTACTGGGTCGAGGTGCTGGGCTACCAGCGGGAGGAGGTGATCGGGCGCAAGTCGACCGA
TTTTCTCACCGAGGAATCGCGCCGCTATGCCGAAGAGGTCGTCCTGCCCGAGTTCTTCCGCACCGGTTTTTGCCGCAACG
TCCATTATCAGATGGTGAAAAAGAGCGGGGAGCTCCTGGACGTGCTCCTTGTCGCCTCGGGGGAGCGGGGACCCCAGGGG
GAACTGCTGCGCTCCTTTGCCGTCATGACCGACGTGACCGAATGGAAGGCTGCGGAAAAGGCTCTGAAGGAGAGCGAAGA
GCGCTACCGCATGATAGTGGAGACCTCCCAGGAGGGGATACTAGCCGTCGATGCCGAAGGGCGCGTAAGCTACGCCAACC
GTCAGTTCGCCGAGATGCTGGGCCTGGAGGTCGGCGACGTCGTCGGGCGTCTTTTCCTTGAGTTCGTCGACGGCTGCCTG
CACGACGAGATAGCCGCTAAAATGAAGAGCCGGGAAAAGGGGCTGTCCGAGCATTACGAGACGATCTTGCTGCGCAACGG
CGGCTCCAGGATGTGGGCCAGCGTTTCCGCCATCCCGGTAAAAGGCCCAAGCGGCGACTTCACCGGGGCGTTCGCCATGG
TCTCCGACATCACCAAGCGCAAACAGGCTGCCGAGGAGATCGAGGTGCTGCACACGCATCTTTCGGCGCGCGCCTGCGAG
ATGGAGCTTGCCAACGAGGAACTGGAGGCGTTCAGCTACACCGTTTCCCACGACCTCAGAAGGCCTCTCACCGCCATCAA
CGGCTTCAGCCAGGTGCTGCTCGAGCTTTACGGTCCCGGCATGGACCCGCAGTGCAGGGAATACGTACGGGAGATCCTCA
ACGGCAGCATCAGGATGAACCACCTGATAGACACGCTGATCAACTTCTCGCGCCGAAGCGTAGGTGAATCGGTCCGGGAA
GAGGTGGAGATAACCGGTCTGGTGGAGGAACTTTACGCCGAACTCAAACGCGCCGAGCCTCAGCGCAACGTCTCCCTCCT
TGTCCAGCCGGGCGTGCGCGGTGTCGCCGATGCACATCTTTTGCGCGTGGTCCTGGACAACCTTTTGGGGAATGCCTGGA
AGTACTCCGCCAAAAAGGAGTTAAGCGAGATCGCTTTCGGCACCATCGACCACCAGGGGAAGACCGCCTACTTCGTCCGG
GACAACGGGGCAGGTTTCGACATGGCCCTGGGGGATCTGCTGTTCAAGCCGTTCCAGCGCCTCCACGACGCGCGCGATTT
CGAAGGGACCGGCATCGGCCTCGCCAGCGTGCAGCGCATCATTCAGCGGCACGGCGGCCAGATCTGGGCCGAGAGCGAAC
CCGGCAAAGGGGCGACCTTCTACTTCACCCTCGGCTAG

Upstream 100 bases:

>100_bases
TGGCTTCCAGGCGCCGGACGCCGTGATTCTAGTTGACACTTTCAGCTGCAAGGCGTAAACAAAAACTCACTCATCGTGCC
ACGAAAGCTGGAGCAAAGTG

Downstream 100 bases:

>100_bases
GGCAGGGGGATTCGTTCGGCAAATGCAACAGCTAACCGGACGGTGCTGCCCTAATATGGTTCCGGCGCAAGGCGCGTCAG
CATCTTTTGCCGGTATTCCA

Product: PAS/PAS domain-containing sensor histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 545; Mature: 545

Protein sequence:

>545_residues
MQDDLTPERREKLPKAPLDISLPDPKGALLLQDLQRRLARVEAENAQLRRVIESQRSDEEGYRSLYNDTPVMLHSIDRNG
LLLGVSNYWVEVLGYQREEVIGRKSTDFLTEESRRYAEEVVLPEFFRTGFCRNVHYQMVKKSGELLDVLLVASGERGPQG
ELLRSFAVMTDVTEWKAAEKALKESEERYRMIVETSQEGILAVDAEGRVSYANRQFAEMLGLEVGDVVGRLFLEFVDGCL
HDEIAAKMKSREKGLSEHYETILLRNGGSRMWASVSAIPVKGPSGDFTGAFAMVSDITKRKQAAEEIEVLHTHLSARACE
MELANEELEAFSYTVSHDLRRPLTAINGFSQVLLELYGPGMDPQCREYVREILNGSIRMNHLIDTLINFSRRSVGESVRE
EVEITGLVEELYAELKRAEPQRNVSLLVQPGVRGVADAHLLRVVLDNLLGNAWKYSAKKELSEIAFGTIDHQGKTAYFVR
DNGAGFDMALGDLLFKPFQRLHDARDFEGTGIGLASVQRIIQRHGGQIWAESEPGKGATFYFTLG

Sequences:

>Translated_545_residues
MQDDLTPERREKLPKAPLDISLPDPKGALLLQDLQRRLARVEAENAQLRRVIESQRSDEEGYRSLYNDTPVMLHSIDRNG
LLLGVSNYWVEVLGYQREEVIGRKSTDFLTEESRRYAEEVVLPEFFRTGFCRNVHYQMVKKSGELLDVLLVASGERGPQG
ELLRSFAVMTDVTEWKAAEKALKESEERYRMIVETSQEGILAVDAEGRVSYANRQFAEMLGLEVGDVVGRLFLEFVDGCL
HDEIAAKMKSREKGLSEHYETILLRNGGSRMWASVSAIPVKGPSGDFTGAFAMVSDITKRKQAAEEIEVLHTHLSARACE
MELANEELEAFSYTVSHDLRRPLTAINGFSQVLLELYGPGMDPQCREYVREILNGSIRMNHLIDTLINFSRRSVGESVRE
EVEITGLVEELYAELKRAEPQRNVSLLVQPGVRGVADAHLLRVVLDNLLGNAWKYSAKKELSEIAFGTIDHQGKTAYFVR
DNGAGFDMALGDLLFKPFQRLHDARDFEGTGIGLASVQRIIQRHGGQIWAESEPGKGATFYFTLG
>Mature_545_residues
MQDDLTPERREKLPKAPLDISLPDPKGALLLQDLQRRLARVEAENAQLRRVIESQRSDEEGYRSLYNDTPVMLHSIDRNG
LLLGVSNYWVEVLGYQREEVIGRKSTDFLTEESRRYAEEVVLPEFFRTGFCRNVHYQMVKKSGELLDVLLVASGERGPQG
ELLRSFAVMTDVTEWKAAEKALKESEERYRMIVETSQEGILAVDAEGRVSYANRQFAEMLGLEVGDVVGRLFLEFVDGCL
HDEIAAKMKSREKGLSEHYETILLRNGGSRMWASVSAIPVKGPSGDFTGAFAMVSDITKRKQAAEEIEVLHTHLSARACE
MELANEELEAFSYTVSHDLRRPLTAINGFSQVLLELYGPGMDPQCREYVREILNGSIRMNHLIDTLINFSRRSVGESVRE
EVEITGLVEELYAELKRAEPQRNVSLLVQPGVRGVADAHLLRVVLDNLLGNAWKYSAKKELSEIAFGTIDHQGKTAYFVR
DNGAGFDMALGDLLFKPFQRLHDARDFEGTGIGLASVQRIIQRHGGQIWAESEPGKGATFYFTLG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=370, Percent_Identity=29.7297297297297, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI48994928, Length=318, Percent_Identity=25.1572327044025, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786912, Length=220, Percent_Identity=31.3636363636364, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1789149, Length=251, Percent_Identity=24.3027888446215, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1790346, Length=209, Percent_Identity=32.0574162679426, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI145693157, Length=262, Percent_Identity=27.4809160305344, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87082128, Length=221, Percent_Identity=26.6968325791855, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1789808, Length=197, Percent_Identity=30.9644670050761, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1790861, Length=208, Percent_Identity=29.8076923076923, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 61317; Mature: 61317

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDDLTPERREKLPKAPLDISLPDPKGALLLQDLQRRLARVEAENAQLRRVIESQRSDEE
CCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
GYRSLYNDTPVMLHSIDRNGLLLGVSNYWVEVLGYQREEVIGRKSTDFLTEESRRYAEEV
HHHHHHCCCCEEEEECCCCCEEEEHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHH
VLPEFFRTGFCRNVHYQMVKKSGELLDVLLVASGERGPQGELLRSFAVMTDVTEWKAAEK
HHHHHHHCCHHHHHHHHHHHCCCHHEEEHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
ALKESEERYRMIVETSQEGILAVDAEGRVSYANRQFAEMLGLEVGDVVGRLFLEFVDGCL
HHHHHHHHHHHHHEECCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
HDEIAAKMKSREKGLSEHYETILLRNGGSRMWASVSAIPVKGPSGDFTGAFAMVSDITKR
HHHHHHHHHHHHCCHHHHHHEEEEECCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHH
KQAAEEIEVLHTHLSARACEMELANEELEAFSYTVSHDLRRPLTAINGFSQVLLELYGPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
MDPQCREYVREILNGSIRMNHLIDTLINFSRRSVGESVREEVEITGLVEELYAELKRAEP
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QRNVSLLVQPGVRGVADAHLLRVVLDNLLGNAWKYSAKKELSEIAFGTIDHQGKTAYFVR
CCCCEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
DNGAGFDMALGDLLFKPFQRLHDARDFEGTGIGLASVQRIIQRHGGQIWAESEPGKGATF
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCEEE
YFTLG
EEECC
>Mature Secondary Structure
MQDDLTPERREKLPKAPLDISLPDPKGALLLQDLQRRLARVEAENAQLRRVIESQRSDEE
CCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
GYRSLYNDTPVMLHSIDRNGLLLGVSNYWVEVLGYQREEVIGRKSTDFLTEESRRYAEEV
HHHHHHCCCCEEEEECCCCCEEEEHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHH
VLPEFFRTGFCRNVHYQMVKKSGELLDVLLVASGERGPQGELLRSFAVMTDVTEWKAAEK
HHHHHHHCCHHHHHHHHHHHCCCHHEEEHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
ALKESEERYRMIVETSQEGILAVDAEGRVSYANRQFAEMLGLEVGDVVGRLFLEFVDGCL
HHHHHHHHHHHHHEECCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
HDEIAAKMKSREKGLSEHYETILLRNGGSRMWASVSAIPVKGPSGDFTGAFAMVSDITKR
HHHHHHHHHHHHCCHHHHHHEEEEECCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHH
KQAAEEIEVLHTHLSARACEMELANEELEAFSYTVSHDLRRPLTAINGFSQVLLELYGPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
MDPQCREYVREILNGSIRMNHLIDTLINFSRRSVGESVREEVEITGLVEELYAELKRAEP
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QRNVSLLVQPGVRGVADAHLLRVVLDNLLGNAWKYSAKKELSEIAFGTIDHQGKTAYFVR
CCCCEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
DNGAGFDMALGDLLFKPFQRLHDARDFEGTGIGLASVQRIIQRHGGQIWAESEPGKGATF
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCEEE
YFTLG
EEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]