| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119167
Identifier: 197119167
GI number: 197119167
Start: 3221697
End: 3222329
Strand: Direct
Name: 197119167
Synonym: Gbem_2794
Alternate gene names: NA
Gene position: 3221697-3222329 (Clockwise)
Preceding gene: 197119166
Following gene: 197119168
Centisome position: 69.81
GC content: 59.56
Gene sequence:
>633_bases GTGACCTCGCCGCTCCCGCACAGTGAGGACTTGAAGGCGATCGTCTTCGACCTGGACGGGACGCTCTACCGGGAGGACCG GCTGGGCGATGAGGTGAACCAGAGCGCGATCCGCTACGTAGCAGCGCTGCGGCAGGTGGATATGATCGACGCCGAGGCGA TGCTGCAGCGGGCTCGCGCCGAAAGCAGAGACGGCGGTACCTTGAGCCGCTCCGTGGTGGCGCTGGGGGGAAACCTCCCG GAAATGCACCGCAGGTTCGCCGCCGAAATCCATCCAGAAGAGTTCCTGAAAAGAGACGAGCGGGTGCCCAAGCTCCTGAA GCTCTTGGCCACCCGCTTCCAGCTCTACCTCTATACCAACAACAACCGTGACCTCTCCGGGCGCATCATGGCCCGGTTGG GCGTCACCGGCCTTTTCCGGGAAATCTTCACCATCGAGGATTACTGGCTTCCCAAGCCGGACTCCAAGCTCATCACTGAC ATACTTACCAAAATCGCTGTCAAACCTGCCGAGGCTCTTTTCGTCGGCGACCGCTATGAGGTCGACCTGATGGTTCCCGA GTCAATGGGGTGCCCCATATTCGAATCCCAAACAGTCGAGGAATTGCTGACGCTTGAACAATTAGTTCATTGA
Upstream 100 bases:
>100_bases TTCCCGAGGGGGGGATGGGCGATACCTTCAAGGTACTGATCCAGTCCAAGGGGGTCGACAACCCGCAGCTTCTCTGCATG AGGAAATGGGGGATGGGACT
Downstream 100 bases:
>100_bases CTGGCAAACGCCATCAGCTAGAATGCTTCACACCTAATGCGCAGCTACTGTCTCTGTCTCACGATTGAAGAGGCTCGACG CTCAAAGTAACAAGGACGCT
Product: HAD superfamily hydrolase
Products: NA
Alternate protein names: Haloacid Dehalogenase Domain Protein Hydrolase; HAD Family Hydrolase; Hydrolase
Number of amino acids: Translated: 210; Mature: 209
Protein sequence:
>210_residues MTSPLPHSEDLKAIVFDLDGTLYREDRLGDEVNQSAIRYVAALRQVDMIDAEAMLQRARAESRDGGTLSRSVVALGGNLP EMHRRFAAEIHPEEFLKRDERVPKLLKLLATRFQLYLYTNNNRDLSGRIMARLGVTGLFREIFTIEDYWLPKPDSKLITD ILTKIAVKPAEALFVGDRYEVDLMVPESMGCPIFESQTVEELLTLEQLVH
Sequences:
>Translated_210_residues MTSPLPHSEDLKAIVFDLDGTLYREDRLGDEVNQSAIRYVAALRQVDMIDAEAMLQRARAESRDGGTLSRSVVALGGNLP EMHRRFAAEIHPEEFLKRDERVPKLLKLLATRFQLYLYTNNNRDLSGRIMARLGVTGLFREIFTIEDYWLPKPDSKLITD ILTKIAVKPAEALFVGDRYEVDLMVPESMGCPIFESQTVEELLTLEQLVH >Mature_209_residues TSPLPHSEDLKAIVFDLDGTLYREDRLGDEVNQSAIRYVAALRQVDMIDAEAMLQRARAESRDGGTLSRSVVALGGNLPE MHRRFAAEIHPEEFLKRDERVPKLLKLLATRFQLYLYTNNNRDLSGRIMARLGVTGLFREIFTIEDYWLPKPDSKLITDI LTKIAVKPAEALFVGDRYEVDLMVPESMGCPIFESQTVEELLTLEQLVH
Specific function: Unknown
COG id: COG1011
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23920; Mature: 23789
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSPLPHSEDLKAIVFDLDGTLYREDRLGDEVNQSAIRYVAALRQVDMIDAEAMLQRARA CCCCCCCCCCCEEEEEECCCCEEEHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH ESRDGGTLSRSVVALGGNLPEMHRRFAAEIHPEEFLKRDERVPKLLKLLATRFQLYLYTN CCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEC NNRDLSGRIMARLGVTGLFREIFTIEDYWLPKPDSKLITDILTKIAVKPAEALFVGDRYE CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHEEECCCEE VDLMVPESMGCPIFESQTVEELLTLEQLVH EEEECCCCCCCCCCCHHHHHHHHHHHHHHC >Mature Secondary Structure TSPLPHSEDLKAIVFDLDGTLYREDRLGDEVNQSAIRYVAALRQVDMIDAEAMLQRARA CCCCCCCCCCEEEEEECCCCEEEHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH ESRDGGTLSRSVVALGGNLPEMHRRFAAEIHPEEFLKRDERVPKLLKLLATRFQLYLYTN CCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEC NNRDLSGRIMARLGVTGLFREIFTIEDYWLPKPDSKLITDILTKIAVKPAEALFVGDRYE CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHEEECCCEE VDLMVPESMGCPIFESQTVEELLTLEQLVH EEEECCCCCCCCCCCHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA