| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119155
Identifier: 197119155
GI number: 197119155
Start: 3210440
End: 3211054
Strand: Direct
Name: 197119155
Synonym: Gbem_2782
Alternate gene names: NA
Gene position: 3210440-3211054 (Clockwise)
Preceding gene: 197119154
Following gene: 197119156
Centisome position: 69.56
GC content: 50.08
Gene sequence:
>615_bases ATGAGTACACGAAGGACCAAACTAGCAGTGGTATGCGCATTGTTAACGATCGGAGTGCCAGCTTCTTTAGGAGCAGAATC CATTTACACTTCTTTAAAAGAGGAAGATTGCCATAATCCACCTTTGGCTATTTCTGCTGCTTACGATGCTGATGATCTCA CTGTCCAAGAGTGTGCAGCTCCAAAGGGATGGAGGCTCTTTGTGGTTTCTTCTGAAGAGAGGTCATGGGTAGATATCAGT CGAGGTTCTTTTCTATGGAGCACCGAAAGAGCGGTGGTGTACGAAAATTCATTCGGTTTATTTCCCAATGTCGGAAGCGC AGTAGCTGAGTGGATGGTTGCAGGAGATGGGCGGCTATCTTCATTAATCTTTCGAATCTCCGCTCAGGATCCGAATCTGC CTGTCGCTGGCGGTAACGTTCGACGGGTCTCTCGACTCCTCGTCATCGATCTGCGAGACAAGGAGCCAACTTCCTGCGGA CTAGCTAAAACCAATCAAGAAGCAAGAAACCTTGCGGCTAGGGGACGGTTATGCAGAGAGAAGTTGCCACAGAAGAAGTT TCGTTCACCCTCACCGTCAGTGCCGGGCGGCAAGAGCCTGCGGCGTCCTGCATGA
Upstream 100 bases:
>100_bases TCAGCGTACGTGAAGGAGTAGCTAACCCACCGGGTTTAATCCGTACACGAAAGTGTGTGGGTAGTGCGAGGGCCGCGCTT GCCACAAAAGGAGGCACAGC
Downstream 100 bases:
>100_bases ATAACCAGTCGACCAAGGAAAATAATGGCCCTTCTCAGATCGCTGATTATCGAGTCGATAATCTTCTTCATTCTTGTTTT AACTGAAGCTAATGGCTCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 204; Mature: 203
Protein sequence:
>204_residues MSTRRTKLAVVCALLTIGVPASLGAESIYTSLKEEDCHNPPLAISAAYDADDLTVQECAAPKGWRLFVVSSEERSWVDIS RGSFLWSTERAVVYENSFGLFPNVGSAVAEWMVAGDGRLSSLIFRISAQDPNLPVAGGNVRRVSRLLVIDLRDKEPTSCG LAKTNQEARNLAARGRLCREKLPQKKFRSPSPSVPGGKSLRRPA
Sequences:
>Translated_204_residues MSTRRTKLAVVCALLTIGVPASLGAESIYTSLKEEDCHNPPLAISAAYDADDLTVQECAAPKGWRLFVVSSEERSWVDIS RGSFLWSTERAVVYENSFGLFPNVGSAVAEWMVAGDGRLSSLIFRISAQDPNLPVAGGNVRRVSRLLVIDLRDKEPTSCG LAKTNQEARNLAARGRLCREKLPQKKFRSPSPSVPGGKSLRRPA >Mature_203_residues STRRTKLAVVCALLTIGVPASLGAESIYTSLKEEDCHNPPLAISAAYDADDLTVQECAAPKGWRLFVVSSEERSWVDISR GSFLWSTERAVVYENSFGLFPNVGSAVAEWMVAGDGRLSSLIFRISAQDPNLPVAGGNVRRVSRLLVIDLRDKEPTSCGL AKTNQEARNLAARGRLCREKLPQKKFRSPSPSVPGGKSLRRPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22201; Mature: 22069
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTRRTKLAVVCALLTIGVPASLGAESIYTSLKEEDCHNPPLAISAAYDADDLTVQECAA CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHCC PKGWRLFVVSSEERSWVDISRGSFLWSTERAVVYENSFGLFPNVGSAVAEWMVAGDGRLS CCCCEEEEEECCCCCEEEECCCCEEEECCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCE SLIFRISAQDPNLPVAGGNVRRVSRLLVIDLRDKEPTSCGLAKTNQEARNLAARGRLCRE EEEEEEECCCCCCCCCCCCHHHEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH KLPQKKFRSPSPSVPGGKSLRRPA HCCHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure STRRTKLAVVCALLTIGVPASLGAESIYTSLKEEDCHNPPLAISAAYDADDLTVQECAA CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHCC PKGWRLFVVSSEERSWVDISRGSFLWSTERAVVYENSFGLFPNVGSAVAEWMVAGDGRLS CCCCEEEEEECCCCCEEEECCCCEEEECCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCE SLIFRISAQDPNLPVAGGNVRRVSRLLVIDLRDKEPTSCGLAKTNQEARNLAARGRLCRE EEEEEEECCCCCCCCCCCCHHHEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH KLPQKKFRSPSPSVPGGKSLRRPA HCCHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA