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The map label for this gene is cspLA [H]

Identifier: 197119112

GI number: 197119112

Start: 3167313

End: 3167519

Strand: Direct

Name: cspLA [H]

Synonym: Gbem_2739

Alternate gene names: 197119112

Gene position: 3167313-3167519 (Clockwise)

Preceding gene: 197119111

Following gene: 197119131

Centisome position: 68.63

GC content: 56.04

Gene sequence:

>207_bases
ATGGCACAGGGGAAAGTGAAATGGTTTAACGACGCAAAAGGATTCGGCTTCATCGAGCAGGATAACGGCGAGGACGTGTT
CGTGCACTTCTCCGCTATCACAGGGGACGGCTTCAAGTCCCTGGCCGAAGGGGAGTCTGTTTCCTTCGACGTCACCAACG
GGCCGAAGGGTCTGCAGGCTGCCAACGTTAAGAAACTCGGCGCCTAA

Upstream 100 bases:

>100_bases
AACCACTTTGCGCCGTTTCCAGCCTAGAAACTCTCCGGAAATTGCAGCATCAAACGTAGATCCGGCAGAGTTCCGGAGGT
AACAAAAAGGAGGCAGGAAA

Downstream 100 bases:

>100_bases
CGTCGGCACAAATGCAAAAAAGCCCCGCCGGAGCGCTCCGGCGGGGCTTTTTTATTTTTAAGAAGCATCCCCTCCCAGTT
TGAACTCTGGACGCCCCCTT

Product: cold shock DNA/RNA-binding protein

Products: NA

Alternate protein names: CspL [H]

Number of amino acids: Translated: 68; Mature: 67

Protein sequence:

>68_residues
MAQGKVKWFNDAKGFGFIEQDNGEDVFVHFSAITGDGFKSLAEGESVSFDVTNGPKGLQAANVKKLGA

Sequences:

>Translated_68_residues
MAQGKVKWFNDAKGFGFIEQDNGEDVFVHFSAITGDGFKSLAEGESVSFDVTNGPKGLQAANVKKLGA
>Mature_67_residues
AQGKVKWFNDAKGFGFIEQDNGEDVFVHFSAITGDGFKSLAEGESVSFDVTNGPKGLQAANVKKLGA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=63.0769230769231, Blast_Score=83, Evalue=4e-18,
Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=58.4615384615385, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=62.5, Blast_Score=75, Evalue=8e-16,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=54.6875, Blast_Score=75, Evalue=1e-15,
Organism=Escherichia coli, GI1787834, Length=64, Percent_Identity=56.25, Blast_Score=70, Evalue=3e-14,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=57.3770491803279, Blast_Score=68, Evalue=9e-14,
Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=53.125, Blast_Score=66, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=50.8196721311475, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7209; Mature: 7078

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQGKVKWFNDAKGFGFIEQDNGEDVFVHFSAITGDGFKSLAEGESVSFDVTNGPKGLQA
CCCCCEEEECCCCCCCEEECCCCCEEEEEEEEECCCCCCHHCCCCCEEEEECCCCCCCCC
ANVKKLGA
CCEEECCC
>Mature Secondary Structure 
AQGKVKWFNDAKGFGFIEQDNGEDVFVHFSAITGDGFKSLAEGESVSFDVTNGPKGLQA
CCCCEEEECCCCCCCEEECCCCCEEEEEEEEECCCCCCHHCCCCCEEEEECCCCCCCCC
ANVKKLGA
CCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669; 9439003 [H]