| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119111
Identifier: 197119111
GI number: 197119111
Start: 3166063
End: 3167091
Strand: Direct
Name: 197119111
Synonym: Gbem_2738
Alternate gene names: NA
Gene position: 3166063-3167091 (Clockwise)
Preceding gene: 197119102
Following gene: 197119112
Centisome position: 68.6
GC content: 54.23
Gene sequence:
>1029_bases ATGCAACTGCGTTTTAACAGAACAAACGATGAAATCGACCAGATGATCGACCAATTGATGGAGAAAGCCGGAGGGGTGCA CCACCCGGACCTGGCACGCGAGATGATCATCTCCGCACTCAAGGCGGGGCAGGATACCGACTATTTGGCCGACCTCAAAC TTCTGAGCAACACCATGAAGGAGATGCGCTACACCACGAAGATCTTCGCCCCCTACCGGCATAAGAAGAAGGTGACCATC TTCGGTTCAGCCCGGACCAACCCCGAAGAGCCTATGTACAAGAAGTGCATCGACTTCGCCGCCCTTTTGGCGGACAAGGG GTACATGATCATCACCGGCGGCGGCGGCGGGATCATGCAAGCCGGAAACGAAGGAGCCGGCAGCGAATCATCCTTTGCCG CCAACATACGGCTACCGTTCGAGCAGTCCGCAAACCCGGTCATGCTTAAGAACCCGCGACTCATTACCTATAAATACTTC TTCAACCGCAAGGTGGCCTTCGTGAAAGAATCCGACGCCATCGCGGTATTCCCGGGCGGCTTCGGTACGCTCGACGAGGC GATGGAGGTATTTACCCTGATCCAGACCGGGAAGACTTCGCCCAAACCGCTGGTTCTCGTAGACGACGAGGAAGGGTACT GGGAACACTTCTTCAGGTTCATCAAAGAAAGACTGCTGGTTATGGGGTTCATCTCCGCAGAGGACTTCTCCATCTTCACC ATCACCAAGAGCTATGAGGAAGCGGTCCAGGTCATCGAGGAGTTTTATACCAACTACCATTCTATGCGGTTCGTTAACGG CGAGCTCATCATCCGCCTAACGAAAATTTTGACTCCCGAGCAGATCGAGATGCTGGAGAACGAATTCCCCGAATTGAGAT TAGACAACAGCCGCATCGAATTAATTAGCGCCCGGCCGGAGGAAGCTGACGAGCCGGATCTCCTTGATTTGCCGAGGATA GCCTTCCACTTCCACCACCAGCACTACGGGCTGCTGATGGCCTTCATTAGGCGGCTTAACACCTTCTGA
Upstream 100 bases:
>100_bases CCCTACAAATCAAACTAATAATTGTTCAATGTTATTAAACATTTGCCCTCAGGATTCACCGTGCTATAATGGCCGCCTCA TTCCAACAGGGAGCGCCCTC
Downstream 100 bases:
>100_bases GAGGGCCATCATAAAAAAAGTGTTCTGAAAATATTTTCTTGACAAGGTTATTATACGATGTTAATTTTTATCCCAGCAGC TAGTTTCGGAAGTTGACAGC
Product: Rossmann fold nucleotide-binding protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 342; Mature: 342
Protein sequence:
>342_residues MQLRFNRTNDEIDQMIDQLMEKAGGVHHPDLAREMIISALKAGQDTDYLADLKLLSNTMKEMRYTTKIFAPYRHKKKVTI FGSARTNPEEPMYKKCIDFAALLADKGYMIITGGGGGIMQAGNEGAGSESSFAANIRLPFEQSANPVMLKNPRLITYKYF FNRKVAFVKESDAIAVFPGGFGTLDEAMEVFTLIQTGKTSPKPLVLVDDEEGYWEHFFRFIKERLLVMGFISAEDFSIFT ITKSYEEAVQVIEEFYTNYHSMRFVNGELIIRLTKILTPEQIEMLENEFPELRLDNSRIELISARPEEADEPDLLDLPRI AFHFHHQHYGLLMAFIRRLNTF
Sequences:
>Translated_342_residues MQLRFNRTNDEIDQMIDQLMEKAGGVHHPDLAREMIISALKAGQDTDYLADLKLLSNTMKEMRYTTKIFAPYRHKKKVTI FGSARTNPEEPMYKKCIDFAALLADKGYMIITGGGGGIMQAGNEGAGSESSFAANIRLPFEQSANPVMLKNPRLITYKYF FNRKVAFVKESDAIAVFPGGFGTLDEAMEVFTLIQTGKTSPKPLVLVDDEEGYWEHFFRFIKERLLVMGFISAEDFSIFT ITKSYEEAVQVIEEFYTNYHSMRFVNGELIIRLTKILTPEQIEMLENEFPELRLDNSRIELISARPEEADEPDLLDLPRI AFHFHHQHYGLLMAFIRRLNTF >Mature_342_residues MQLRFNRTNDEIDQMIDQLMEKAGGVHHPDLAREMIISALKAGQDTDYLADLKLLSNTMKEMRYTTKIFAPYRHKKKVTI FGSARTNPEEPMYKKCIDFAALLADKGYMIITGGGGGIMQAGNEGAGSESSFAANIRLPFEQSANPVMLKNPRLITYKYF FNRKVAFVKESDAIAVFPGGFGTLDEAMEVFTLIQTGKTSPKPLVLVDDEEGYWEHFFRFIKERLLVMGFISAEDFSIFT ITKSYEEAVQVIEEFYTNYHSMRFVNGELIIRLTKILTPEQIEMLENEFPELRLDNSRIELISARPEEADEPDLLDLPRI AFHFHHQHYGLLMAFIRRLNTF
Specific function: Unknown
COG id: COG1611
COG function: function code R; Predicted Rossmann fold nucleotide-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39256; Mature: 39256
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLRFNRTNDEIDQMIDQLMEKAGGVHHPDLAREMIISALKAGQDTDYLADLKLLSNTMK CEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH EMRYTTKIFAPYRHKKKVTIFGSARTNPEEPMYKKCIDFAALLADKGYMIITGGGGGIMQ HHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCEEC AGNEGAGSESSFAANIRLPFEQSANPVMLKNPRLITYKYFFNRKVAFVKESDAIAVFPGG CCCCCCCCCCCEEEEEECCCCCCCCCEEEECCEEEEEEEEECCEEEEEECCCEEEEECCC FGTLDEAMEVFTLIQTGKTSPKPLVLVDDEEGYWEHFFRFIKERLLVMGFISAEDFSIFT CCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHEEECCCCEEEEE ITKSYEEAVQVIEEFYTNYHSMRFVNGELIIRLTKILTPEQIEMLENEFPELRLDNSRIE EECCHHHHHHHHHHHHHCHHHEEEECCCEEEEEHHHCCHHHHHHHHCCCCCEEECCCEEE LISARPEEADEPDLLDLPRIAFHFHHQHYGLLMAFIRRLNTF EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MQLRFNRTNDEIDQMIDQLMEKAGGVHHPDLAREMIISALKAGQDTDYLADLKLLSNTMK CEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH EMRYTTKIFAPYRHKKKVTIFGSARTNPEEPMYKKCIDFAALLADKGYMIITGGGGGIMQ HHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCEEC AGNEGAGSESSFAANIRLPFEQSANPVMLKNPRLITYKYFFNRKVAFVKESDAIAVFPGG CCCCCCCCCCCEEEEEECCCCCCCCCEEEECCEEEEEEEEECCEEEEEECCCEEEEECCC FGTLDEAMEVFTLIQTGKTSPKPLVLVDDEEGYWEHFFRFIKERLLVMGFISAEDFSIFT CCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHEEECCCCEEEEE ITKSYEEAVQVIEEFYTNYHSMRFVNGELIIRLTKILTPEQIEMLENEFPELRLDNSRIE EECCHHHHHHHHHHHHHCHHHEEEECCCEEEEEHHHCCHHHHHHHHCCCCCEEECCCEEE LISARPEEADEPDLLDLPRIAFHFHHQHYGLLMAFIRRLNTF EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA