| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119097
Identifier: 197119097
GI number: 197119097
Start: 3150236
End: 3152035
Strand: Reverse
Name: 197119097
Synonym: Gbem_2724
Alternate gene names: NA
Gene position: 3152035-3150236 (Counterclockwise)
Preceding gene: 197119099
Following gene: 197119095
Centisome position: 68.3
GC content: 60.5
Gene sequence:
>1800_bases ATGAACTATCGCGTACTGAGGAGGGGGTTACAAGGGATACTGACACTGGGCGTTTTCCTTGCCGCAGGTTGCGGCGGCGG AGGAGGGGGGGTGACCTCCGGGAACAGCGTACATGGCGTCGTCGCCGACGGTTATCTCGAAAACGCCAGGGTGTTTCTGG ATCTGAACGACGACAAACAGTTCACTACCGGAGAACCAACCGCCATGACCGCGGTCGACGGCAGCTACACTATTACCGGG GTCACCGCCGCCCAGCTCGCGGCTCATGCCCTCGTGGTCCGCGCGGAAGCATCCGTCACCAAAAACCACGAGGGGGGTAG CGCTACCACGCTTACCGACAGCTACGTCCTCTCCACACCACCCAACGCCCCGAAGACAGCCGACGGCCAGGTGGTTATCA CTCCGCTTACCACGCTGATCCACAACCAGATCGAGACCAACCCGGTGCTGAACGTGGCCGCAGCCGAGGCTGTGGTGAAA ACCAACCTGGGGGTTGCCGACGCCACCAGCCTTTTCGACGATTTCGTCCAGAAAAAAGGAGCGAGCCTCGAATACGAGAG GGTGAGCATGGTGGCGCAGGTCGTAGCTTCGGCGATCGGCAGCAACATGACGGCGATCTCGACGGCAGCCCCCACGGCCA ACCTGAACGACGTCATCAAGATGGTAGTCTCCGAGGTGGTGGCGCAGCTTAACACCATCTCGAGCGAAGTGGACACGGCC AAAGCCAGCGGCAGCTTCAACCCGACGGCCCTTGCCACCACGGCCGTGACCATCGACACCAGCAATGCGGGAGCGCTGCA GGCGAGCATAGCGCAGGCGGCGACCGCTCCCGTCGTCGGCTCCTTCCAGACCGCCCTCGGGACCGACGGCTTCTTCTATT TGGACAGGCAGTACGACTTAGGCACCGTGACCTACGAGTACGGCAAGGTGAAACTCGGCGCCCAAGGTACCGACGGCTAT GCGCTGACCGAGGAGTTCTTCCGCTACGACACGCTCAATTCGAGCTGGGCCGCAGCGACCGATACCACCAACAACTACGT CCTCTCCAAAACCGGGTGGGTGCCTGAAGACGACAACGCATCTTCGGGCAAGCTGGTTTTCAATGCCGACGGCACCGCCA CCTGGACCAACATCCAAACCGGGGACAGCGAGATCATCACGGTGAGCAAGATGGACGTGGCCGGCAAAGGGATCGCGAGC TTCCTGACCAGACAGAGCTCCCCCATCAACCCGGCAGCCACCTTCCCGGCAGGATCCGAAGCGTACAAGATGACCTTTAC GCGCAAGAGCGACCACTACTCCGTCTGGCTGGGCGGTTATCCCAACAGCATGCTGATGAACGTCGCCAAGGTCTCCGACA TCCCTGCCAGGTTCCCGGCCGCAGGCGACCAGCTCTATGGCGGGCTTTACATCGGCAGTTACCTCTCGGTGCGCTTCTCT GGCTCCGGGACCAGCGGCACTTTGCAGTTCTTCGGGCAGGGGGCACCCCTCAGCCTCGAAGGTACCTGGAAGATAGTCGA GCCCGTTGCCGGTTATCCGGTGCTGGTGCTTGATGTGCCGCTTAGCTACCGCACCCAATACATGGACTACTCTCCGGAAA AGATCATCTTTGCTCAGGTGAACGGCTCGATCCGGCAAGGTGAGGCGGAATACGCCAACGTCCCGCGGATGGAGACCGGT TACAACTTCAATAAGACCGCCTTCGACGCCATAATGTCCAACTTCAACCCTTCCTTGGGGACGACGCTGAAAAAGGCCGT CAAAACGACGGTTAAGAAGACGGCTCGCAAAAGTTACTAA
Upstream 100 bases:
>100_bases CTCACTCACTGGTACCGATAGATGTATTCGATCTGCAAATCAAAGGCAGTTCTGCTTCAGGGCCTGCAGGCCCTGAAAGA ACCCGAGAAAAGGAGAGTCA
Downstream 100 bases:
>100_bases GCTACTGCTAGTCAGCGAAAAAACCTCCCCGGGGCGTGGCGCCCGGGGAGGTTTTTTTTAGGTGCCGAAGGCGGGTCAGG CTGCACCCGGTCTCACTTGC
Product: lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 599; Mature: 599
Protein sequence:
>599_residues MNYRVLRRGLQGILTLGVFLAAGCGGGGGGVTSGNSVHGVVADGYLENARVFLDLNDDKQFTTGEPTAMTAVDGSYTITG VTAAQLAAHALVVRAEASVTKNHEGGSATTLTDSYVLSTPPNAPKTADGQVVITPLTTLIHNQIETNPVLNVAAAEAVVK TNLGVADATSLFDDFVQKKGASLEYERVSMVAQVVASAIGSNMTAISTAAPTANLNDVIKMVVSEVVAQLNTISSEVDTA KASGSFNPTALATTAVTIDTSNAGALQASIAQAATAPVVGSFQTALGTDGFFYLDRQYDLGTVTYEYGKVKLGAQGTDGY ALTEEFFRYDTLNSSWAAATDTTNNYVLSKTGWVPEDDNASSGKLVFNADGTATWTNIQTGDSEIITVSKMDVAGKGIAS FLTRQSSPINPAATFPAGSEAYKMTFTRKSDHYSVWLGGYPNSMLMNVAKVSDIPARFPAAGDQLYGGLYIGSYLSVRFS GSGTSGTLQFFGQGAPLSLEGTWKIVEPVAGYPVLVLDVPLSYRTQYMDYSPEKIIFAQVNGSIRQGEAEYANVPRMETG YNFNKTAFDAIMSNFNPSLGTTLKKAVKTTVKKTARKSY
Sequences:
>Translated_599_residues MNYRVLRRGLQGILTLGVFLAAGCGGGGGGVTSGNSVHGVVADGYLENARVFLDLNDDKQFTTGEPTAMTAVDGSYTITG VTAAQLAAHALVVRAEASVTKNHEGGSATTLTDSYVLSTPPNAPKTADGQVVITPLTTLIHNQIETNPVLNVAAAEAVVK TNLGVADATSLFDDFVQKKGASLEYERVSMVAQVVASAIGSNMTAISTAAPTANLNDVIKMVVSEVVAQLNTISSEVDTA KASGSFNPTALATTAVTIDTSNAGALQASIAQAATAPVVGSFQTALGTDGFFYLDRQYDLGTVTYEYGKVKLGAQGTDGY ALTEEFFRYDTLNSSWAAATDTTNNYVLSKTGWVPEDDNASSGKLVFNADGTATWTNIQTGDSEIITVSKMDVAGKGIAS FLTRQSSPINPAATFPAGSEAYKMTFTRKSDHYSVWLGGYPNSMLMNVAKVSDIPARFPAAGDQLYGGLYIGSYLSVRFS GSGTSGTLQFFGQGAPLSLEGTWKIVEPVAGYPVLVLDVPLSYRTQYMDYSPEKIIFAQVNGSIRQGEAEYANVPRMETG YNFNKTAFDAIMSNFNPSLGTTLKKAVKTTVKKTARKSY >Mature_599_residues MNYRVLRRGLQGILTLGVFLAAGCGGGGGGVTSGNSVHGVVADGYLENARVFLDLNDDKQFTTGEPTAMTAVDGSYTITG VTAAQLAAHALVVRAEASVTKNHEGGSATTLTDSYVLSTPPNAPKTADGQVVITPLTTLIHNQIETNPVLNVAAAEAVVK TNLGVADATSLFDDFVQKKGASLEYERVSMVAQVVASAIGSNMTAISTAAPTANLNDVIKMVVSEVVAQLNTISSEVDTA KASGSFNPTALATTAVTIDTSNAGALQASIAQAATAPVVGSFQTALGTDGFFYLDRQYDLGTVTYEYGKVKLGAQGTDGY ALTEEFFRYDTLNSSWAAATDTTNNYVLSKTGWVPEDDNASSGKLVFNADGTATWTNIQTGDSEIITVSKMDVAGKGIAS FLTRQSSPINPAATFPAGSEAYKMTFTRKSDHYSVWLGGYPNSMLMNVAKVSDIPARFPAAGDQLYGGLYIGSYLSVRFS GSGTSGTLQFFGQGAPLSLEGTWKIVEPVAGYPVLVLDVPLSYRTQYMDYSPEKIIFAQVNGSIRQGEAEYANVPRMETG YNFNKTAFDAIMSNFNPSLGTTLKKAVKTTVKKTARKSY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63089; Mature: 63089
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYRVLRRGLQGILTLGVFLAAGCGGGGGGVTSGNSVHGVVADGYLENARVFLDLNDDKQ CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCEECCCEEEEEECCCCC FTTGEPTAMTAVDGSYTITGVTAAQLAAHALVVRAEASVTKNHEGGSATTLTDSYVLSTP CCCCCCCEEEEECCCEEEEEHHHHHHHHHHEEEEECCHHCCCCCCCCEEEEECCEEEECC PNAPKTADGQVVITPLTTLIHNQIETNPVLNVAAAEAVVKTNLGVADATSLFDDFVQKKG CCCCCCCCCCEEEEEHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHHHCC ASLEYERVSMVAQVVASAIGSNMTAISTAAPTANLNDVIKMVVSEVVAQLNTISSEVDTA CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH KASGSFNPTALATTAVTIDTSNAGALQASIAQAATAPVVGSFQTALGTDGFFYLDRQYDL HCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHCCCCEEEEECCCCC GTVTYEYGKVKLGAQGTDGYALTEEFFRYDTLNSSWAAATDTTNNYVLSKTGWVPEDDNA CEEEEECCEEEECCCCCCCCHHHHHHHHHCCCCCCCEEECCCCCCEEEEECCCCCCCCCC SSGKLVFNADGTATWTNIQTGDSEIITVSKMDVAGKGIASFLTRQSSPINPAATFPAGSE CCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCC AYKMTFTRKSDHYSVWLGGYPNSMLMNVAKVSDIPARFPAAGDQLYGGLYIGSYLSVRFS EEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHCCCEEEEEEEEEEEE GSGTSGTLQFFGQGAPLSLEGTWKIVEPVAGYPVLVLDVPLSYRTQYMDYSPEKIIFAQV CCCCCCEEEEECCCCCEEECCCEEEECCCCCCEEEEEECCHHHHHHHCCCCCCEEEEEEE NGSIRQGEAEYANVPRMETGYNFNKTAFDAIMSNFNPSLGTTLKKAVKTTVKKTARKSY CCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNYRVLRRGLQGILTLGVFLAAGCGGGGGGVTSGNSVHGVVADGYLENARVFLDLNDDKQ CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCEECCCEEEEEECCCCC FTTGEPTAMTAVDGSYTITGVTAAQLAAHALVVRAEASVTKNHEGGSATTLTDSYVLSTP CCCCCCCEEEEECCCEEEEEHHHHHHHHHHEEEEECCHHCCCCCCCCEEEEECCEEEECC PNAPKTADGQVVITPLTTLIHNQIETNPVLNVAAAEAVVKTNLGVADATSLFDDFVQKKG CCCCCCCCCCEEEEEHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHHHCC ASLEYERVSMVAQVVASAIGSNMTAISTAAPTANLNDVIKMVVSEVVAQLNTISSEVDTA CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH KASGSFNPTALATTAVTIDTSNAGALQASIAQAATAPVVGSFQTALGTDGFFYLDRQYDL HCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHCCCCEEEEECCCCC GTVTYEYGKVKLGAQGTDGYALTEEFFRYDTLNSSWAAATDTTNNYVLSKTGWVPEDDNA CEEEEECCEEEECCCCCCCCHHHHHHHHHCCCCCCCEEECCCCCCEEEEECCCCCCCCCC SSGKLVFNADGTATWTNIQTGDSEIITVSKMDVAGKGIASFLTRQSSPINPAATFPAGSE CCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCC AYKMTFTRKSDHYSVWLGGYPNSMLMNVAKVSDIPARFPAAGDQLYGGLYIGSYLSVRFS EEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHCCCEEEEEEEEEEEE GSGTSGTLQFFGQGAPLSLEGTWKIVEPVAGYPVLVLDVPLSYRTQYMDYSPEKIIFAQV CCCCCCEEEEECCCCCEEECCCEEEECCCCCCEEEEEECCHHHHHHHCCCCCCEEEEEEE NGSIRQGEAEYANVPRMETGYNFNKTAFDAIMSNFNPSLGTTLKKAVKTTVKKTARKSY CCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA