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The map label for this gene is ydjZ [C]

Identifier: 197119099

GI number: 197119099

Start: 3153728

End: 3154411

Strand: Reverse

Name: ydjZ [C]

Synonym: Gbem_2726

Alternate gene names: 197119099

Gene position: 3154411-3153728 (Counterclockwise)

Preceding gene: 197119103

Following gene: 197119097

Centisome position: 68.35

GC content: 63.74

Gene sequence:

>684_bases
ATGAGTCGAAAACGAAGGGCGATGAAGGTGTTCATCCTGATGCTTATGGTGGGGGCTGCGGTCGCCACGATCTGGCTTTT
GGAGGACGAGGGGTTCAGCGTGCGGCACGCCGGCGAGCACAGGGACTACCTGTTGCAGATGGTGCACAGGCACTACTCTA
AGGCGGTGCTGTTTTTCCTGACCCTATTCTTCATGACGGCGTTCTTTCTACCGGGGGCGCTGGCGCTCACCCTGGCGGGG
GGGATGCTGTTCGGGACCTTTCCCGCGACCCTATACGTCACCCTAGCCGGGACCGCCGGCGCGGTGGCCGCCTTCGAGGC
GGGACGCTTCCTCCTGGGGCACTGGGTGCAGCGGCACTTCTCCGAGCAGCTCTCGCGCTTCAACCTGGAGATGTCCCATC
ACGGCCCGCATTACCTGCTGGTACTGCGGCTGCTCCCCATCGCCCCCTTCTGCGTCATCAACTACGGTGCTGCCATGACC
AGGATTCCGCTGAAGACCTTCGCCTGGACCACGGTCGCCGGCATGCTCCCCGGCTCCGCGATCTACGCCTTTACCGGGGC
CCAGTTGCGCCAGGTGCATGAGGCATCGGATCTCTTGTCCGGGAAATCCATGCTCGCCATGGGGTTTTTGGCCCTCTCTG
CCCTGGTGCCGGTGTTCCTGCACCACTGGCCCCGCCGTCCCTAA

Upstream 100 bases:

>100_bases
ATATAGTATTAAAAACTTTTATAGGGTACCCAGCAGGAAAAGGATGTCAACGCTGCGGCGAGGCGGACGGGGACGGGCCG
AAACGGCCAGGAAGGCGGCG

Downstream 100 bases:

>100_bases
ACCCTCTACTTCTGCCGCAGGTACTCGATCAGCAGGCGTACCCCGATCCCGGTCGCCCCCTTGGGGGAGTAGGGGCGCCC
CTTGTCGCTCCAGGCGGTGC

Product: membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MSRKRRAMKVFILMLMVGAAVATIWLLEDEGFSVRHAGEHRDYLLQMVHRHYSKAVLFFLTLFFMTAFFLPGALALTLAG
GMLFGTFPATLYVTLAGTAGAVAAFEAGRFLLGHWVQRHFSEQLSRFNLEMSHHGPHYLLVLRLLPIAPFCVINYGAAMT
RIPLKTFAWTTVAGMLPGSAIYAFTGAQLRQVHEASDLLSGKSMLAMGFLALSALVPVFLHHWPRRP

Sequences:

>Translated_227_residues
MSRKRRAMKVFILMLMVGAAVATIWLLEDEGFSVRHAGEHRDYLLQMVHRHYSKAVLFFLTLFFMTAFFLPGALALTLAG
GMLFGTFPATLYVTLAGTAGAVAAFEAGRFLLGHWVQRHFSEQLSRFNLEMSHHGPHYLLVLRLLPIAPFCVINYGAAMT
RIPLKTFAWTTVAGMLPGSAIYAFTGAQLRQVHEASDLLSGKSMLAMGFLALSALVPVFLHHWPRRP
>Mature_226_residues
SRKRRAMKVFILMLMVGAAVATIWLLEDEGFSVRHAGEHRDYLLQMVHRHYSKAVLFFLTLFFMTAFFLPGALALTLAGG
MLFGTFPATLYVTLAGTAGAVAAFEAGRFLLGHWVQRHFSEQLSRFNLEMSHHGPHYLLVLRLLPIAPFCVINYGAAMTR
IPLKTFAWTTVAGMLPGSAIYAFTGAQLRQVHEASDLLSGKSMLAMGFLALSALVPVFLHHWPRRP

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17532687, Length=204, Percent_Identity=25, Blast_Score=77, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 25265; Mature: 25134

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKRRAMKVFILMLMVGAAVATIWLLEDEGFSVRHAGEHRDYLLQMVHRHYSKAVLFFL
CCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TLFFMTAFFLPGALALTLAGGMLFGTFPATLYVTLAGTAGAVAAFEAGRFLLGHWVQRHF
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
SEQLSRFNLEMSHHGPHYLLVLRLLPIAPFCVINYGAAMTRIPLKTFAWTTVAGMLPGSA
HHHHHHCCCCCCCCCCHHHHHHHHHHHCHHHHHHCCHHHHHCCHHHHHHHHHHHHCCCCH
IYAFTGAQLRQVHEASDLLSGKSMLAMGFLALSALVPVFLHHWPRRP
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SRKRRAMKVFILMLMVGAAVATIWLLEDEGFSVRHAGEHRDYLLQMVHRHYSKAVLFFL
CCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TLFFMTAFFLPGALALTLAGGMLFGTFPATLYVTLAGTAGAVAAFEAGRFLLGHWVQRHF
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
SEQLSRFNLEMSHHGPHYLLVLRLLPIAPFCVINYGAAMTRIPLKTFAWTTVAGMLPGSA
HHHHHHCCCCCCCCCCHHHHHHHHHHHCHHHHHHCCHHHHHCCHHHHHHHHHHHHCCCCH
IYAFTGAQLRQVHEASDLLSGKSMLAMGFLALSALVPVFLHHWPRRP
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]