Definition Geobacter bemidjiensis Bem chromosome, complete genome.
Accession NC_011146
Length 4,615,150

Click here to switch to the map view.

The map label for this gene is 197119078

Identifier: 197119078

GI number: 197119078

Start: 3123541

End: 3123918

Strand: Direct

Name: 197119078

Synonym: Gbem_2705

Alternate gene names: NA

Gene position: 3123541-3123918 (Clockwise)

Preceding gene: 197119074

Following gene: 197119087

Centisome position: 67.68

GC content: 58.47

Gene sequence:

>378_bases
ATGAACATGTTCACCGCGATGATGGCTACCGTCACCTTGACCATGACTGCTGTTATGGCGCCAAGGATTTACCTGTCATG
GCTCATGGCTGAGGAGCGCTGCCTTGAGGGAGAGATCGAGGAACTGCATGCGTTGCTGGCCGAGCAAAACGATTGGGTCA
AGCGTCACTTCGGTTGCGGCGCAGCCGCTGTGGCCATGATCTGGATGGTGAAGACGTCCCAGCACGACCTGGAGGTCCCC
GCCTCGATGGCAGTCGCGCTGGGGGCGTATGCGGTCATCTCGATGACGTTCGCCGTTTTGGAATCGCTGGTGGCCCAAAA
GATAGCGACCTTCCTGCAGACGGTACCGATCCGGGTAGAGGTACGCGAAGAGAACTAG

Upstream 100 bases:

>100_bases
CAGATCATTAATGAGAAAAAATGCGGCACCACAAGGGTTTCGGCTCCCTTCCTGCTACATAAGGACAAGGCAGCGTAAAC
ACGAAACCAGGGGGTAATGC

Downstream 100 bases:

>100_bases
TGGTAGCACTTAGGCCTAGCGCCGCCTGAGGAAGAGCTCCACCGCAACCCTCAACAGGTTCGCCAGGTAGATGCAAAGGA
ACATGATGACGGCGAGATTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MNMFTAMMATVTLTMTAVMAPRIYLSWLMAEERCLEGEIEELHALLAEQNDWVKRHFGCGAAAVAMIWMVKTSQHDLEVP
ASMAVALGAYAVISMTFAVLESLVAQKIATFLQTVPIRVEVREEN

Sequences:

>Translated_125_residues
MNMFTAMMATVTLTMTAVMAPRIYLSWLMAEERCLEGEIEELHALLAEQNDWVKRHFGCGAAAVAMIWMVKTSQHDLEVP
ASMAVALGAYAVISMTFAVLESLVAQKIATFLQTVPIRVEVREEN
>Mature_125_residues
MNMFTAMMATVTLTMTAVMAPRIYLSWLMAEERCLEGEIEELHALLAEQNDWVKRHFGCGAAAVAMIWMVKTSQHDLEVP
ASMAVALGAYAVISMTFAVLESLVAQKIATFLQTVPIRVEVREEN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13894; Mature: 13894

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
8.8 %Met     (Translated Protein)
10.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
8.8 %Met     (Mature Protein)
10.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMFTAMMATVTLTMTAVMAPRIYLSWLMAEERCLEGEIEELHALLAEQNDWVKRHFGCG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCC
AAAVAMIWMVKTSQHDLEVPASMAVALGAYAVISMTFAVLESLVAQKIATFLQTVPIRVE
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
VREEN
EECCC
>Mature Secondary Structure
MNMFTAMMATVTLTMTAVMAPRIYLSWLMAEERCLEGEIEELHALLAEQNDWVKRHFGCG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCC
AAAVAMIWMVKTSQHDLEVPASMAVALGAYAVISMTFAVLESLVAQKIATFLQTVPIRVE
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
VREEN
EECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA