Click here to switch to the map view.

The map label for this gene is yohD [H]

Identifier: 197119063

GI number: 197119063

Start: 3110816

End: 3111436

Strand: Reverse

Name: yohD [H]

Synonym: Gbem_2688

Alternate gene names: 197119063

Gene position: 3111436-3110816 (Counterclockwise)

Preceding gene: 197119064

Following gene: 197119062

Centisome position: 67.42

GC content: 56.52

Gene sequence:

>621_bases
GTGCATGAATTTTTCAAGGAATACCTGCAGGTGCACGGGTACTGGGTGCTCTTTCTGGGGACCTTCCTCGAAGGGGAGGC
GATACTCATCTTCGCCGGGTTCCTCGCCTTCGGGGGGTACCTCAACATATATCTGGTGATGCTCTCCGCCCTTGCCGGGT
CCTTTTTGGGCGACCAGTTCTACTTCCATGTCGGGCGCCGCAAAGGCCCCTTCCTCCTCAAGTTCTTCTCCTCCATAGCC
AAGAAATTCAGAAAAGCCCTGAAGCTGATCGAGCGTTACGGCACCTTCGTCGCCTTCATCTCCCGCTACACCTACGGTTT
CAGAATTGTGCTTCCCATCATCCTCGGCATGACGCCATTCCCCTCCCGGTCCTTCTTGTACCTTAACCTGGCATCCGCGC
TCAGTTGGTCCATCGTCTTCTCCATGGCGGGGTACTTGTTCGGAAAAGCCGCCGGCCTCTTCATCGAAGATGTCGGGCGT
TACGAGCCGTACCTGCTCCTCGCCTTGGGCACCATCGTCTTTTGTTTCTGGATCAGCCATTTTGTCGCTCACTGGTGGCG
CCAGCGCCCCGCAAGAGCCAGGCTGAGAAGGATGAAACTCCGGAACCTCCAAAACCCTTAG

Upstream 100 bases:

>100_bases
AACGAAGCGGAAGCGACTGACCCGGGCGAGGGGTTTGTTATACTCTCAAACTGTGCCCGCGTGGCGGGCGGCTTCCATCT
CACAGTAGTACGGAGCGGCG

Downstream 100 bases:

>100_bases
CCACGGAGACACGGAGTAGGAATCCGAGAAAAGCAAAAAATGATTCTCTCCAGTTTTGATTTCTCAGATTTCCTCAGACG
TCCTCCTTGCCAATGGTTTT

Product: membrane protein DedA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MHEFFKEYLQVHGYWVLFLGTFLEGEAILIFAGFLAFGGYLNIYLVMLSALAGSFLGDQFYFHVGRRKGPFLLKFFSSIA
KKFRKALKLIERYGTFVAFISRYTYGFRIVLPIILGMTPFPSRSFLYLNLASALSWSIVFSMAGYLFGKAAGLFIEDVGR
YEPYLLLALGTIVFCFWISHFVAHWWRQRPARARLRRMKLRNLQNP

Sequences:

>Translated_206_residues
MHEFFKEYLQVHGYWVLFLGTFLEGEAILIFAGFLAFGGYLNIYLVMLSALAGSFLGDQFYFHVGRRKGPFLLKFFSSIA
KKFRKALKLIERYGTFVAFISRYTYGFRIVLPIILGMTPFPSRSFLYLNLASALSWSIVFSMAGYLFGKAAGLFIEDVGR
YEPYLLLALGTIVFCFWISHFVAHWWRQRPARARLRRMKLRNLQNP
>Mature_206_residues
MHEFFKEYLQVHGYWVLFLGTFLEGEAILIFAGFLAFGGYLNIYLVMLSALAGSFLGDQFYFHVGRRKGPFLLKFFSSIA
KKFRKALKLIERYGTFVAFISRYTYGFRIVLPIILGMTPFPSRSFLYLNLASALSWSIVFSMAGYLFGKAAGLFIEDVGR
YEPYLLLALGTIVFCFWISHFVAHWWRQRPARARLRRMKLRNLQNP

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI87082056, Length=150, Percent_Identity=34, Blast_Score=100, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 23954; Mature: 23954

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEFFKEYLQVHGYWVLFLGTFLEGEAILIFAGFLAFGGYLNIYLVMLSALAGSFLGDQF
CHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFHVGRRKGPFLLKFFSSIAKKFRKALKLIERYGTFVAFISRYTYGFRIVLPIILGMTPF
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PSRSFLYLNLASALSWSIVFSMAGYLFGKAAGLFIEDVGRYEPYLLLALGTIVFCFWISH
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
FVAHWWRQRPARARLRRMKLRNLQNP
HHHHHHHCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MHEFFKEYLQVHGYWVLFLGTFLEGEAILIFAGFLAFGGYLNIYLVMLSALAGSFLGDQF
CHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFHVGRRKGPFLLKFFSSIAKKFRKALKLIERYGTFVAFISRYTYGFRIVLPIILGMTPF
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PSRSFLYLNLASALSWSIVFSMAGYLFGKAAGLFIEDVGRYEPYLLLALGTIVFCFWISH
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
FVAHWWRQRPARARLRRMKLRNLQNP
HHHHHHHCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]