| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119022
Identifier: 197119022
GI number: 197119022
Start: 3062034
End: 3063752
Strand: Reverse
Name: 197119022
Synonym: Gbem_2645
Alternate gene names: NA
Gene position: 3063752-3062034 (Counterclockwise)
Preceding gene: 197119028
Following gene: 197119021
Centisome position: 66.38
GC content: 61.61
Gene sequence:
>1719_bases ATGACCAAGAAGTGTCTAGCGCTCCTTTCCCTCACTTTGTTAATTAATGCCTGCGCCAGCGAGCACGCCGCCGGCACGAT CCCTTCGGCCGGACTCGAGGCTGTTGCGGCCCCGTCGGCCGGTCCCGGAGAGGGACGCACCATGTACCTCTTCGCCTTGG CGCGTCTGCGTGCCACCGAGGGGGATCAGGATGCGGCGCTCGTGCTTTTGCGCCAGGCGATGGAATCCGACCCGGCGGCA GCCTACCTGCACACGGCGGCGGCCCAGATCCTCTTGCAGCAGAATAAACCCGAGGAGGCGCTGGTCGAAAGCCAGACCGC CATCAATACCGACCCCGCTTTCCTGCAGGCGCAGCTTCTTTCAGGGAACATCCTGATGACCATGCAGCGCGAGAAGGAGG CCATCCCCTATTACAAGAAGGTGATGGAACTCGACCCGACGAAAGAAGAGGTCTACCTCCACGTCGCCATCTATTACCTT AAGAGTTTCGAGTACGAGCAGGCGGTCGACACCCTGAAGGCGTTGGTCAAGGCTTCGCCCGATTCGGCGCTCGGCTACTA CTACCTTGCCAAGACCTACGAGCAGATGCGTCTGCCGCGCGAAGCGCTCGGCTACTACAAGAAGGCCCTCGATTTGAAGC CGGACTTCGAGCAGGCGCTGATAGAGATGGGGATCTCGCAGGAGACCCAGGGGCTCATCCCCGACGCCATCGAGAGCTAC AAGGGGCTTCTCGATATCAACCCTGCCAACGCCAACGTCGTGCAGCATCTGGCGCAGCTCTACATCCAGCAGAAGCGGCT TAGCGAGGCGCTCGCCCTGTTGCAGGAAAAGGGGGGGAAGACCCTCGAGAACTCCCGCAAGATCGGGCTTTTGTTCCTGG AGCTGGAGCGCTACGACGATGCGGTGAAGACCTTCCAGGAGATCCTCGAGGTAGAGCCTGCCTCCCAGCAGGTCCGCTTT TACCTCGCCACCGCCTACGAAGAGAAGGATGCTGCCGACCTGGCCATCGCCGAATTCCTGAAGGTCCCCAAGGAGTCTCC CTACTATCCCGATGCAGTCGGCCACCTGGCCTACCTGTACAAGGAGAAGGGGACCCCGGAGAAAGGGATCGCCCTCCTGA AGGAAGAGGTTAAGGATCAGCCTTCGAGGGTCGAGCCGTACCTGCATCTGGCCGGCCTCTACGAGTCGATGGAGCGCTAC CGGGAAGGGGTCGACACGCTGAATTCCATGGACGACAAGCTCCAGAACGACCCCCGCGTATTGTTCCGCCTCGGCATCCT GTACGACAAACTCGGGCAGAAAGAGCAGTCGGTCGCCATGATGAAGCGGGTTATCGCCGCGACCCCGGACGACGCCAACG CGCTCAACTACCTGGGGTACACCTATGCGGAGATGGGGGTGAACCTCGAGGAGGCGCTTTCCTACCTGAAGAAGGCGGTC GAGCTGAAGCCGGACGACGGCTTCATCATGGACAGCCTCGGCTGGACCTACTTCAAGCTCAAGCGCTACAACGAGGCGGT CGCCCAACTGGAGCGGGCAGCGGAGCTCTCCGACGAGGACGCCACGGTGCTCGGACATCTCGCCGACGCCTACTGCGCCG CCCGTTCCTATAAGAAGGCGCTCCCGCTGTACCGGAAGCTGCAGAAGCTGGAGCCCGAGCAGAACGCCGAGCTCGCCGAG AAGATCAGGCACTGCCGCCAGGAGAGCGGGGAAAAATGA
Upstream 100 bases:
>100_bases TTTCGTGTAATTAGCCGCGCCATCCCTAGGATACTGTATCCCACAGGGTGCCGCGTTTTTTCGATTTTTGCCACGGAAAT CTACCGACCACAGGTACCTC
Downstream 100 bases:
>100_bases CCTTTTCCCGCTGTCTCCCCCTCCTTCTAGCCCTCCTTGTCTTCGCCGGTTGCGCCAAGGGTGCGCCTGAGGACAAGGCG CGCGCGCAGGGCGGGGCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 572; Mature: 571
Protein sequence:
>572_residues MTKKCLALLSLTLLINACASEHAAGTIPSAGLEAVAAPSAGPGEGRTMYLFALARLRATEGDQDAALVLLRQAMESDPAA AYLHTAAAQILLQQNKPEEALVESQTAINTDPAFLQAQLLSGNILMTMQREKEAIPYYKKVMELDPTKEEVYLHVAIYYL KSFEYEQAVDTLKALVKASPDSALGYYYLAKTYEQMRLPREALGYYKKALDLKPDFEQALIEMGISQETQGLIPDAIESY KGLLDINPANANVVQHLAQLYIQQKRLSEALALLQEKGGKTLENSRKIGLLFLELERYDDAVKTFQEILEVEPASQQVRF YLATAYEEKDAADLAIAEFLKVPKESPYYPDAVGHLAYLYKEKGTPEKGIALLKEEVKDQPSRVEPYLHLAGLYESMERY REGVDTLNSMDDKLQNDPRVLFRLGILYDKLGQKEQSVAMMKRVIAATPDDANALNYLGYTYAEMGVNLEEALSYLKKAV ELKPDDGFIMDSLGWTYFKLKRYNEAVAQLERAAELSDEDATVLGHLADAYCAARSYKKALPLYRKLQKLEPEQNAELAE KIRHCRQESGEK
Sequences:
>Translated_572_residues MTKKCLALLSLTLLINACASEHAAGTIPSAGLEAVAAPSAGPGEGRTMYLFALARLRATEGDQDAALVLLRQAMESDPAA AYLHTAAAQILLQQNKPEEALVESQTAINTDPAFLQAQLLSGNILMTMQREKEAIPYYKKVMELDPTKEEVYLHVAIYYL KSFEYEQAVDTLKALVKASPDSALGYYYLAKTYEQMRLPREALGYYKKALDLKPDFEQALIEMGISQETQGLIPDAIESY KGLLDINPANANVVQHLAQLYIQQKRLSEALALLQEKGGKTLENSRKIGLLFLELERYDDAVKTFQEILEVEPASQQVRF YLATAYEEKDAADLAIAEFLKVPKESPYYPDAVGHLAYLYKEKGTPEKGIALLKEEVKDQPSRVEPYLHLAGLYESMERY REGVDTLNSMDDKLQNDPRVLFRLGILYDKLGQKEQSVAMMKRVIAATPDDANALNYLGYTYAEMGVNLEEALSYLKKAV ELKPDDGFIMDSLGWTYFKLKRYNEAVAQLERAAELSDEDATVLGHLADAYCAARSYKKALPLYRKLQKLEPEQNAELAE KIRHCRQESGEK >Mature_571_residues TKKCLALLSLTLLINACASEHAAGTIPSAGLEAVAAPSAGPGEGRTMYLFALARLRATEGDQDAALVLLRQAMESDPAAA YLHTAAAQILLQQNKPEEALVESQTAINTDPAFLQAQLLSGNILMTMQREKEAIPYYKKVMELDPTKEEVYLHVAIYYLK SFEYEQAVDTLKALVKASPDSALGYYYLAKTYEQMRLPREALGYYKKALDLKPDFEQALIEMGISQETQGLIPDAIESYK GLLDINPANANVVQHLAQLYIQQKRLSEALALLQEKGGKTLENSRKIGLLFLELERYDDAVKTFQEILEVEPASQQVRFY LATAYEEKDAADLAIAEFLKVPKESPYYPDAVGHLAYLYKEKGTPEKGIALLKEEVKDQPSRVEPYLHLAGLYESMERYR EGVDTLNSMDDKLQNDPRVLFRLGILYDKLGQKEQSVAMMKRVIAATPDDANALNYLGYTYAEMGVNLEEALSYLKKAVE LKPDDGFIMDSLGWTYFKLKRYNEAVAQLERAAELSDEDATVLGHLADAYCAARSYKKALPLYRKLQKLEPEQNAELAEK IRHCRQESGEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 7 TPR repeats [H]
Homologues:
Organism=Homo sapiens, GI32307148, Length=422, Percent_Identity=23.2227488151659, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI32307150, Length=422, Percent_Identity=23.2227488151659, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI301336134, Length=438, Percent_Identity=21.9178082191781, Blast_Score=74, Evalue=4e-13, Organism=Homo sapiens, GI83415184, Length=438, Percent_Identity=21.9178082191781, Blast_Score=74, Evalue=4e-13, Organism=Homo sapiens, GI28329439, Length=507, Percent_Identity=21.301775147929, Blast_Score=73, Evalue=6e-13, Organism=Homo sapiens, GI28558993, Length=507, Percent_Identity=21.301775147929, Blast_Score=73, Evalue=7e-13, Organism=Caenorhabditis elegans, GI115532692, Length=357, Percent_Identity=22.1288515406162, Blast_Score=84, Evalue=2e-16, Organism=Caenorhabditis elegans, GI115532690, Length=357, Percent_Identity=22.1288515406162, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI17647755, Length=480, Percent_Identity=24.375, Blast_Score=96, Evalue=6e-20, Organism=Drosophila melanogaster, GI24585827, Length=480, Percent_Identity=24.375, Blast_Score=96, Evalue=6e-20, Organism=Drosophila melanogaster, GI24585829, Length=480, Percent_Identity=24.375, Blast_Score=96, Evalue=6e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001440 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF00515 TPR_1 [H]
EC number: NA
Molecular weight: Translated: 64094; Mature: 63963
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKKCLALLSLTLLINACASEHAAGTIPSAGLEAVAAPSAGPGEGRTMYLFALARLRATE CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCEEHHHHHHHHHCCC GDQDAALVLLRQAMESDPAAAYLHTAAAQILLQQNKPEEALVESQTAINTDPAFLQAQLL CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHH SGNILMTMQREKEAIPYYKKVMELDPTKEEVYLHVAIYYLKSFEYEQAVDTLKALVKASP CCCEEEEECHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC DSALGYYYLAKTYEQMRLPREALGYYKKALDLKPDFEQALIEMGISQETQGLIPDAIESY CCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHH KGLLDINPANANVVQHLAQLYIQQKRLSEALALLQEKGGKTLENSRKIGLLFLELERYDD CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEHHHHHH AVKTFQEILEVEPASQQVRFYLATAYEEKDAADLAIAEFLKVPKESPYYPDAVGHLAYLY HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH KEKGTPEKGIALLKEEVKDQPSRVEPYLHLAGLYESMERYREGVDTLNSMDDKLQNDPRV HCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH LFRLGILYDKLGQKEQSVAMMKRVIAATPDDANALNYLGYTYAEMGVNLEEALSYLKKAV HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH ELKPDDGFIMDSLGWTYFKLKRYNEAVAQLERAAELSDEDATVLGHLADAYCAARSYKKA CCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH LPLYRKLQKLEPEQNAELAEKIRHCRQESGEK HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure TKKCLALLSLTLLINACASEHAAGTIPSAGLEAVAAPSAGPGEGRTMYLFALARLRATE CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCEEHHHHHHHHHCCC GDQDAALVLLRQAMESDPAAAYLHTAAAQILLQQNKPEEALVESQTAINTDPAFLQAQLL CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHH SGNILMTMQREKEAIPYYKKVMELDPTKEEVYLHVAIYYLKSFEYEQAVDTLKALVKASP CCCEEEEECHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC DSALGYYYLAKTYEQMRLPREALGYYKKALDLKPDFEQALIEMGISQETQGLIPDAIESY CCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHH KGLLDINPANANVVQHLAQLYIQQKRLSEALALLQEKGGKTLENSRKIGLLFLELERYDD CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEHHHHHH AVKTFQEILEVEPASQQVRFYLATAYEEKDAADLAIAEFLKVPKESPYYPDAVGHLAYLY HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH KEKGTPEKGIALLKEEVKDQPSRVEPYLHLAGLYESMERYREGVDTLNSMDDKLQNDPRV HCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH LFRLGILYDKLGQKEQSVAMMKRVIAATPDDANALNYLGYTYAEMGVNLEEALSYLKKAV HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH ELKPDDGFIMDSLGWTYFKLKRYNEAVAQLERAAELSDEDATVLGHLADAYCAARSYKKA CCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH LPLYRKLQKLEPEQNAELAEKIRHCRQESGEK HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]