| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is bamC-2 [C]
Identifier: 197118996
GI number: 197118996
Start: 3035842
End: 3036375
Strand: Reverse
Name: bamC-2 [C]
Synonym: Gbem_2619
Alternate gene names: 197118996
Gene position: 3036375-3035842 (Counterclockwise)
Preceding gene: 197118997
Following gene: 197118995
Centisome position: 65.79
GC content: 55.81
Gene sequence:
>534_bases ATGGCGAAAATTAAGAAAAAGATCAGAACGATCACTGTCAATGCGGACAAGTGCAACGGTTGTCGGACCTGTGAGGTGAT GTGTTCGGCTTTCCACGCTGTTCCCCCCTACAGCAGCAACAATCCGGGACGGTCCCGCATCCAGATCATCACCGACCGGC TTGAGGACATCTGGCTTCCCGTATTTGCCGGAGAGTACACCGAGGCCGAGTGCATGGGGAGAAACAAGTACATCATCGAC GGCAAGGAGTACCGCGAGTGCGACTCCTGCCGTGCTTCCTGCCCGGCAAGGGACCTGTTCAAGGAGCCCGACTCCGGCCT TCCTCTCAAGTGCGACATGTGCGATGGCGAAGATGAGCCGATCTGCGTCAAGTGGTGCCTCGTGGACGCCTTGAGCTACG AGGAACGGGAAGAGGAAGTGGAAGAGGAAAAACCGAATATGACACAGATGGAGATCGGCCTGGAACAGTTCGCAAAGAAA CACGGGTTGCAGAATGTAGTAGACACAGTCGCCCGCATGGCAAAGAAGGGGTAG
Upstream 100 bases:
>100_bases AAGGGATGGAACGAAGACGGTATTCCCACTAGAGAAAAACTGGAAGAGCTGGGACTGGGCTATGTCGCTAACGACTTGGA AAAAAGGGGGATACTGAAAA
Downstream 100 bases:
>100_bases TACTTAGCAGAGTCCTATCCCCCTCCCTCCGAGGGAGGGGGATAGACAGGAAGGTCCTTTATACCCTCCTCCCCTGGGGG AGGGTGGCCGAAGGTCGGGT
Product: iron-sulfur cluster-binding oxidoreductase benzoyl-CoA reductase electron transfer protein
Products: NA
Alternate protein names: Ferredoxin
Number of amino acids: Translated: 177; Mature: 176
Protein sequence:
>177_residues MAKIKKKIRTITVNADKCNGCRTCEVMCSAFHAVPPYSSNNPGRSRIQIITDRLEDIWLPVFAGEYTEAECMGRNKYIID GKEYRECDSCRASCPARDLFKEPDSGLPLKCDMCDGEDEPICVKWCLVDALSYEEREEEVEEEKPNMTQMEIGLEQFAKK HGLQNVVDTVARMAKKG
Sequences:
>Translated_177_residues MAKIKKKIRTITVNADKCNGCRTCEVMCSAFHAVPPYSSNNPGRSRIQIITDRLEDIWLPVFAGEYTEAECMGRNKYIID GKEYRECDSCRASCPARDLFKEPDSGLPLKCDMCDGEDEPICVKWCLVDALSYEEREEEVEEEKPNMTQMEIGLEQFAKK HGLQNVVDTVARMAKKG >Mature_176_residues AKIKKKIRTITVNADKCNGCRTCEVMCSAFHAVPPYSSNNPGRSRIQIITDRLEDIWLPVFAGEYTEAECMGRNKYIIDG KEYRECDSCRASCPARDLFKEPDSGLPLKCDMCDGEDEPICVKWCLVDALSYEEREEEVEEEKPNMTQMEIGLEQFAKKH GLQNVVDTVARMAKKG
Specific function: Unknown
COG id: COG1142
COG function: function code C; Fe-S-cluster-containing hydrogenase components 2
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20097; Mature: 19966
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.8 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 10.7 %Cys+Met (Translated Protein) 6.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 10.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKIKKKIRTITVNADKCNGCRTCEVMCSAFHAVPPYSSNNPGRSRIQIITDRLEDIWLP CCHHHHHHEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH VFAGEYTEAECMGRNKYIIDGKEYRECDSCRASCPARDLFKEPDSGLPLKCDMCDGEDEP HHCCCCCCHHHCCCCCEEECCHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEECCCCCCCC ICVKWCLVDALSYEEREEEVEEEKPNMTQMEIGLEQFAKKHGLQNVVDTVARMAKKG EEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC >Mature Secondary Structure AKIKKKIRTITVNADKCNGCRTCEVMCSAFHAVPPYSSNNPGRSRIQIITDRLEDIWLP CHHHHHHEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH VFAGEYTEAECMGRNKYIIDGKEYRECDSCRASCPARDLFKEPDSGLPLKCDMCDGEDEP HHCCCCCCHHHCCCCCEEECCHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEECCCCCCCC ICVKWCLVDALSYEEREEEVEEEKPNMTQMEIGLEQFAKKHGLQNVVDTVARMAKKG EEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA