| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is bamB-2 [H]
Identifier: 197118997
GI number: 197118997
Start: 3036362
End: 3038332
Strand: Reverse
Name: bamB-2 [H]
Synonym: Gbem_2620
Alternate gene names: 197118997
Gene position: 3038332-3036362 (Counterclockwise)
Preceding gene: 197118998
Following gene: 197118996
Centisome position: 65.83
GC content: 54.49
Gene sequence:
>1971_bases ATGAGATACGCAGAGGCAGGATACTATTTGGAAATCGACCTGGCGACGGGGAACATCGAACGCGTAGCAACCGACCCCAA GCTGATGCAACTTCATCTGGGAGGATTGGGTACCAGCATCAAGGAACATTGGGACCGGGTCCCGCCAGAGGTTAAGGCGT TTGACCCTGAAAACCACCTTATCTTCAGTACCGGCCTTTTGAATGCTACGCCTGCTTTCAGTGCCAACCGTTCCGTTGTC ACCTTCGTTTCACCGCAGTCGGGGACGTTGGCCTACCCCATGATGGGGGGATTTTTCGCGGCGGAACTGAAGTATGCCGG CTACGACAAGGTGATCTTCAAGAACAAGTCGCCCAACTGGGTGTACCTGTACATCAACAACGACAAGGTAGAGATACGCG ACGCCTCGCATCTGCAGGGAAGAGGCGCCGTTGAAACTCAGGAGCTTATTCGCAAAGAACTGAATCTGCCCAAAGCACAG GTGGCGGCAATAGGCCTTGCCGGCGAGAACCGGGTCTTCACGGCTTCTATCGAGCAGTCAAGGTCGAGCGCCAGCAGGCT CGGCGGCGGCGCTGTCATGGGAGACAAGAAGATAAAGGCAATTGCCGTTCGTGGAACGAAGGACATCTATCTCGCCCGGC CTGAAGAGTTTATGGAACAGATGAAGGGGGTGACGGACTACATCAAGTACAGGTGGGCCAACCCCATCAAGGATGTCATG ACTATCTTGTCCGGCATCGGCTCGCCGCAGGAGATGCTGCATACGGACGAAAAGTGGCACACGGAGAACTTTGCCTGGGG CAATGCCCGCACCAGGAGAAGAGACTTCTGGACCGAAGAAATCGACGAGTCCTGGTCGAAGTCACAACATGCAGCGGTAA AGCGGTTGATAAGCTGCTTTAACTGTCCTACGCATTGCGGGGCGCTGATTTCCCACAAAGATACCCCGCGATATATGGCG AAATGCTTCGGGAAACTCACCTATGCCATGGCGGCCTACGTCGATGACTTGGACTTCTCCTGGAAGATCCTGCAACGCGC TACCGAGTACGGCGTCGACTCATTCTCGACCCCTCAAATCCTGGCCTTCGCCGTTGAACTCTATGAAGCGGGCATCCTGA CGGACAAGGACTTCGCCGGCTGTCCATCCGATAAAGAGGGAAGGTTCTTCTGGCTTCTCGACAGGGTCGTGCGGCGGGAA GGAATCGGCGACGTCCTGGCTGACGGCGTTTATTTCGCGGCCCGCAAGATCGGCAACGGCGCCGAGGCCTTCGATCACAA CACCATCAAGAAGCACGAGCAACTCCCGGTCAAGCTCGGAACGCTGGATCCGCTCTACTTCCTCATGTACGCCACCAACG AGAAGATAAGCATCACCCAGATGGAAGGGCAATGGCCCCAGTCGGCTTTTCCAACCCCGGAGCAGAGAGAGGAGTTCGTA AGGGATTGGCCCCAAATTCCCCATGATAAATTCAAGCAATGGGTACTGGACTGGGAACTGAGGGGAGAAAAGGCCATCCC GTATTATCCGACACCGGACATGTGCTCCGAAATCGTCGACTGGATGGAGATGATGCACAACATCGACGATGCAGTAGGCA TGTGCTGCGGCATGTCGTCGTTCTGCCTGAAACCTCCTTACCACATCCACAACTATCCCAAATTGATCTCTGCCGCGACC GGAATGGACCTGGACGAGGATGGGCTGAAAGAAATCGCCAACAGGAACCGGAACCTGCACAGGGCATACAACAACAGGAA AGGGATCAGAAGGGCCGATGAGAAGCCGCCAACCGATCACTGGAAAAAGAGATTCCCCGAGCTGGAAGAAGAACTGTTGT CGACCTATTACAGATACAAGGGATGGAACGAAGACGGTATTCCCACTAGAGAAAAACTGGAAGAGCTGGGACTGGGCTAT GTCGCTAACGACTTGGAAAAAAGGGGGATACTGAAAAATGGCGAAAATTAA
Upstream 100 bases:
>100_bases AGTGAATGAAAGCGATAGCCCAAGGAGGAACGTTACGAGCGCATTGGTAGATAAGACAGACATCAAGACATGGAATGGGC ACATCTAAAGAGAGGTGAAA
Downstream 100 bases:
>100_bases GAAAAAGATCAGAACGATCACTGTCAATGCGGACAAGTGCAACGGTTGTCGGACCTGTGAGGTGATGTGTTCGGCTTTCC ACGCTGTTCCCCCCTACAGC
Product: benzoyl-CoA reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 656; Mature: 656
Protein sequence:
>656_residues MRYAEAGYYLEIDLATGNIERVATDPKLMQLHLGGLGTSIKEHWDRVPPEVKAFDPENHLIFSTGLLNATPAFSANRSVV TFVSPQSGTLAYPMMGGFFAAELKYAGYDKVIFKNKSPNWVYLYINNDKVEIRDASHLQGRGAVETQELIRKELNLPKAQ VAAIGLAGENRVFTASIEQSRSSASRLGGGAVMGDKKIKAIAVRGTKDIYLARPEEFMEQMKGVTDYIKYRWANPIKDVM TILSGIGSPQEMLHTDEKWHTENFAWGNARTRRRDFWTEEIDESWSKSQHAAVKRLISCFNCPTHCGALISHKDTPRYMA KCFGKLTYAMAAYVDDLDFSWKILQRATEYGVDSFSTPQILAFAVELYEAGILTDKDFAGCPSDKEGRFFWLLDRVVRRE GIGDVLADGVYFAARKIGNGAEAFDHNTIKKHEQLPVKLGTLDPLYFLMYATNEKISITQMEGQWPQSAFPTPEQREEFV RDWPQIPHDKFKQWVLDWELRGEKAIPYYPTPDMCSEIVDWMEMMHNIDDAVGMCCGMSSFCLKPPYHIHNYPKLISAAT GMDLDEDGLKEIANRNRNLHRAYNNRKGIRRADEKPPTDHWKKRFPELEEELLSTYYRYKGWNEDGIPTREKLEELGLGY VANDLEKRGILKNGEN
Sequences:
>Translated_656_residues MRYAEAGYYLEIDLATGNIERVATDPKLMQLHLGGLGTSIKEHWDRVPPEVKAFDPENHLIFSTGLLNATPAFSANRSVV TFVSPQSGTLAYPMMGGFFAAELKYAGYDKVIFKNKSPNWVYLYINNDKVEIRDASHLQGRGAVETQELIRKELNLPKAQ VAAIGLAGENRVFTASIEQSRSSASRLGGGAVMGDKKIKAIAVRGTKDIYLARPEEFMEQMKGVTDYIKYRWANPIKDVM TILSGIGSPQEMLHTDEKWHTENFAWGNARTRRRDFWTEEIDESWSKSQHAAVKRLISCFNCPTHCGALISHKDTPRYMA KCFGKLTYAMAAYVDDLDFSWKILQRATEYGVDSFSTPQILAFAVELYEAGILTDKDFAGCPSDKEGRFFWLLDRVVRRE GIGDVLADGVYFAARKIGNGAEAFDHNTIKKHEQLPVKLGTLDPLYFLMYATNEKISITQMEGQWPQSAFPTPEQREEFV RDWPQIPHDKFKQWVLDWELRGEKAIPYYPTPDMCSEIVDWMEMMHNIDDAVGMCCGMSSFCLKPPYHIHNYPKLISAAT GMDLDEDGLKEIANRNRNLHRAYNNRKGIRRADEKPPTDHWKKRFPELEEELLSTYYRYKGWNEDGIPTREKLEELGLGY VANDLEKRGILKNGEN >Mature_656_residues MRYAEAGYYLEIDLATGNIERVATDPKLMQLHLGGLGTSIKEHWDRVPPEVKAFDPENHLIFSTGLLNATPAFSANRSVV TFVSPQSGTLAYPMMGGFFAAELKYAGYDKVIFKNKSPNWVYLYINNDKVEIRDASHLQGRGAVETQELIRKELNLPKAQ VAAIGLAGENRVFTASIEQSRSSASRLGGGAVMGDKKIKAIAVRGTKDIYLARPEEFMEQMKGVTDYIKYRWANPIKDVM TILSGIGSPQEMLHTDEKWHTENFAWGNARTRRRDFWTEEIDESWSKSQHAAVKRLISCFNCPTHCGALISHKDTPRYMA KCFGKLTYAMAAYVDDLDFSWKILQRATEYGVDSFSTPQILAFAVELYEAGILTDKDFAGCPSDKEGRFFWLLDRVVRRE GIGDVLADGVYFAARKIGNGAEAFDHNTIKKHEQLPVKLGTLDPLYFLMYATNEKISITQMEGQWPQSAFPTPEQREEFV RDWPQIPHDKFKQWVLDWELRGEKAIPYYPTPDMCSEIVDWMEMMHNIDDAVGMCCGMSSFCLKPPYHIHNYPKLISAAT GMDLDEDGLKEIANRNRNLHRAYNNRKGIRRADEKPPTDHWKKRFPELEEELLSTYYRYKGWNEDGIPTREKLEELGLGY VANDLEKRGILKNGEN
Specific function: Unknown
COG id: COG2414
COG function: function code C; Aldehyde:ferredoxin oxidoreductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AOR/FOR family [H]
Homologues:
Organism=Escherichia coli, GI1787962, Length=738, Percent_Identity=26.4227642276423, Blast_Score=159, Evalue=5e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013985 - InterPro: IPR013983 - InterPro: IPR001203 [H]
Pfam domain/function: PF01314 AFOR_C; PF02730 AFOR_N [H]
EC number: =1.2.7.5 [H]
Molecular weight: Translated: 74807; Mature: 74807
Theoretical pI: Translated: 6.47; Mature: 6.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRYAEAGYYLEIDLATGNIERVATDPKLMQLHLGGLGTSIKEHWDRVPPEVKAFDPENHL CCCCCCCCEEEEEEECCCCHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCCEEECCCCCE IFSTGLLNATPAFSANRSVVTFVSPQSGTLAYPMMGGFFAAELKYAGYDKVIFKNKSPNW EEEECCCCCCCCCCCCCCEEEEECCCCCCEECHHHCCHHHHHHHHCCCCEEEEECCCCCE VYLYINNDKVEIRDASHLQGRGAVETQELIRKELNLPKAQVAAIGLAGENRVFTASIEQS EEEEEECCEEEEECCHHCCCCCCCHHHHHHHHHHCCCHHHEEEEEECCCCEEEEEEHHHH RSSASRLGGGAVMGDKKIKAIAVRGTKDIYLARPEEFMEQMKGVTDYIKYRWANPIKDVM HHHHHHCCCCEEECCCCEEEEEEECCCCEEEECHHHHHHHHHCHHHHHHHHCCCHHHHHH TILSGIGSPQEMLHTDEKWHTENFAWGNARTRRRDFWTEEIDESWSKSQHAAVKRLISCF HHHHCCCCCHHHHCCCCHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHH NCPTHCGALISHKDTPRYMAKCFGKLTYAMAAYVDDLDFSWKILQRATEYGVDSFSTPQI CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHH LAFAVELYEAGILTDKDFAGCPSDKEGRFFWLLDRVVRREGIGDVLADGVYFAARKIGNG HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC AEAFDHNTIKKHEQLPVKLGTLDPLYFLMYATNEKISITQMEGQWPQSAFPTPEQREEFV HHHHCCHHHHHHHCCCEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHH RDWPQIPHDKFKQWVLDWELRGEKAIPYYPTPDMCSEIVDWMEMMHNIDDAVGMCCGMSS HHCCCCCHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH FCLKPPYHIHNYPKLISAATGMDLDEDGLKEIANRNRNLHRAYNNRKGIRRADEKPPTDH HHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCHHH WKKRFPELEEELLSTYYRYKGWNEDGIPTREKLEELGLGYVANDLEKRGILKNGEN HHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCC >Mature Secondary Structure MRYAEAGYYLEIDLATGNIERVATDPKLMQLHLGGLGTSIKEHWDRVPPEVKAFDPENHL CCCCCCCCEEEEEEECCCCHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCCEEECCCCCE IFSTGLLNATPAFSANRSVVTFVSPQSGTLAYPMMGGFFAAELKYAGYDKVIFKNKSPNW EEEECCCCCCCCCCCCCCEEEEECCCCCCEECHHHCCHHHHHHHHCCCCEEEEECCCCCE VYLYINNDKVEIRDASHLQGRGAVETQELIRKELNLPKAQVAAIGLAGENRVFTASIEQS EEEEEECCEEEEECCHHCCCCCCCHHHHHHHHHHCCCHHHEEEEEECCCCEEEEEEHHHH RSSASRLGGGAVMGDKKIKAIAVRGTKDIYLARPEEFMEQMKGVTDYIKYRWANPIKDVM HHHHHHCCCCEEECCCCEEEEEEECCCCEEEECHHHHHHHHHCHHHHHHHHCCCHHHHHH TILSGIGSPQEMLHTDEKWHTENFAWGNARTRRRDFWTEEIDESWSKSQHAAVKRLISCF HHHHCCCCCHHHHCCCCHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHH NCPTHCGALISHKDTPRYMAKCFGKLTYAMAAYVDDLDFSWKILQRATEYGVDSFSTPQI CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHH LAFAVELYEAGILTDKDFAGCPSDKEGRFFWLLDRVVRREGIGDVLADGVYFAARKIGNG HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC AEAFDHNTIKKHEQLPVKLGTLDPLYFLMYATNEKISITQMEGQWPQSAFPTPEQREEFV HHHHCCHHHHHHHCCCEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHH RDWPQIPHDKFKQWVLDWELRGEKAIPYYPTPDMCSEIVDWMEMMHNIDDAVGMCCGMSS HHCCCCCHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH FCLKPPYHIHNYPKLISAATGMDLDEDGLKEIANRNRNLHRAYNNRKGIRRADEKPPTDH HHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCHHH WKKRFPELEEELLSTYYRYKGWNEDGIPTREKLEELGLGYVANDLEKRGILKNGEN HHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12622808 [H]