Definition Geobacter bemidjiensis Bem chromosome, complete genome.
Accession NC_011146
Length 4,615,150

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The map label for this gene is bamB-2 [H]

Identifier: 197118997

GI number: 197118997

Start: 3036362

End: 3038332

Strand: Reverse

Name: bamB-2 [H]

Synonym: Gbem_2620

Alternate gene names: 197118997

Gene position: 3038332-3036362 (Counterclockwise)

Preceding gene: 197118998

Following gene: 197118996

Centisome position: 65.83

GC content: 54.49

Gene sequence:

>1971_bases
ATGAGATACGCAGAGGCAGGATACTATTTGGAAATCGACCTGGCGACGGGGAACATCGAACGCGTAGCAACCGACCCCAA
GCTGATGCAACTTCATCTGGGAGGATTGGGTACCAGCATCAAGGAACATTGGGACCGGGTCCCGCCAGAGGTTAAGGCGT
TTGACCCTGAAAACCACCTTATCTTCAGTACCGGCCTTTTGAATGCTACGCCTGCTTTCAGTGCCAACCGTTCCGTTGTC
ACCTTCGTTTCACCGCAGTCGGGGACGTTGGCCTACCCCATGATGGGGGGATTTTTCGCGGCGGAACTGAAGTATGCCGG
CTACGACAAGGTGATCTTCAAGAACAAGTCGCCCAACTGGGTGTACCTGTACATCAACAACGACAAGGTAGAGATACGCG
ACGCCTCGCATCTGCAGGGAAGAGGCGCCGTTGAAACTCAGGAGCTTATTCGCAAAGAACTGAATCTGCCCAAAGCACAG
GTGGCGGCAATAGGCCTTGCCGGCGAGAACCGGGTCTTCACGGCTTCTATCGAGCAGTCAAGGTCGAGCGCCAGCAGGCT
CGGCGGCGGCGCTGTCATGGGAGACAAGAAGATAAAGGCAATTGCCGTTCGTGGAACGAAGGACATCTATCTCGCCCGGC
CTGAAGAGTTTATGGAACAGATGAAGGGGGTGACGGACTACATCAAGTACAGGTGGGCCAACCCCATCAAGGATGTCATG
ACTATCTTGTCCGGCATCGGCTCGCCGCAGGAGATGCTGCATACGGACGAAAAGTGGCACACGGAGAACTTTGCCTGGGG
CAATGCCCGCACCAGGAGAAGAGACTTCTGGACCGAAGAAATCGACGAGTCCTGGTCGAAGTCACAACATGCAGCGGTAA
AGCGGTTGATAAGCTGCTTTAACTGTCCTACGCATTGCGGGGCGCTGATTTCCCACAAAGATACCCCGCGATATATGGCG
AAATGCTTCGGGAAACTCACCTATGCCATGGCGGCCTACGTCGATGACTTGGACTTCTCCTGGAAGATCCTGCAACGCGC
TACCGAGTACGGCGTCGACTCATTCTCGACCCCTCAAATCCTGGCCTTCGCCGTTGAACTCTATGAAGCGGGCATCCTGA
CGGACAAGGACTTCGCCGGCTGTCCATCCGATAAAGAGGGAAGGTTCTTCTGGCTTCTCGACAGGGTCGTGCGGCGGGAA
GGAATCGGCGACGTCCTGGCTGACGGCGTTTATTTCGCGGCCCGCAAGATCGGCAACGGCGCCGAGGCCTTCGATCACAA
CACCATCAAGAAGCACGAGCAACTCCCGGTCAAGCTCGGAACGCTGGATCCGCTCTACTTCCTCATGTACGCCACCAACG
AGAAGATAAGCATCACCCAGATGGAAGGGCAATGGCCCCAGTCGGCTTTTCCAACCCCGGAGCAGAGAGAGGAGTTCGTA
AGGGATTGGCCCCAAATTCCCCATGATAAATTCAAGCAATGGGTACTGGACTGGGAACTGAGGGGAGAAAAGGCCATCCC
GTATTATCCGACACCGGACATGTGCTCCGAAATCGTCGACTGGATGGAGATGATGCACAACATCGACGATGCAGTAGGCA
TGTGCTGCGGCATGTCGTCGTTCTGCCTGAAACCTCCTTACCACATCCACAACTATCCCAAATTGATCTCTGCCGCGACC
GGAATGGACCTGGACGAGGATGGGCTGAAAGAAATCGCCAACAGGAACCGGAACCTGCACAGGGCATACAACAACAGGAA
AGGGATCAGAAGGGCCGATGAGAAGCCGCCAACCGATCACTGGAAAAAGAGATTCCCCGAGCTGGAAGAAGAACTGTTGT
CGACCTATTACAGATACAAGGGATGGAACGAAGACGGTATTCCCACTAGAGAAAAACTGGAAGAGCTGGGACTGGGCTAT
GTCGCTAACGACTTGGAAAAAAGGGGGATACTGAAAAATGGCGAAAATTAA

Upstream 100 bases:

>100_bases
AGTGAATGAAAGCGATAGCCCAAGGAGGAACGTTACGAGCGCATTGGTAGATAAGACAGACATCAAGACATGGAATGGGC
ACATCTAAAGAGAGGTGAAA

Downstream 100 bases:

>100_bases
GAAAAAGATCAGAACGATCACTGTCAATGCGGACAAGTGCAACGGTTGTCGGACCTGTGAGGTGATGTGTTCGGCTTTCC
ACGCTGTTCCCCCCTACAGC

Product: benzoyl-CoA reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 656; Mature: 656

Protein sequence:

>656_residues
MRYAEAGYYLEIDLATGNIERVATDPKLMQLHLGGLGTSIKEHWDRVPPEVKAFDPENHLIFSTGLLNATPAFSANRSVV
TFVSPQSGTLAYPMMGGFFAAELKYAGYDKVIFKNKSPNWVYLYINNDKVEIRDASHLQGRGAVETQELIRKELNLPKAQ
VAAIGLAGENRVFTASIEQSRSSASRLGGGAVMGDKKIKAIAVRGTKDIYLARPEEFMEQMKGVTDYIKYRWANPIKDVM
TILSGIGSPQEMLHTDEKWHTENFAWGNARTRRRDFWTEEIDESWSKSQHAAVKRLISCFNCPTHCGALISHKDTPRYMA
KCFGKLTYAMAAYVDDLDFSWKILQRATEYGVDSFSTPQILAFAVELYEAGILTDKDFAGCPSDKEGRFFWLLDRVVRRE
GIGDVLADGVYFAARKIGNGAEAFDHNTIKKHEQLPVKLGTLDPLYFLMYATNEKISITQMEGQWPQSAFPTPEQREEFV
RDWPQIPHDKFKQWVLDWELRGEKAIPYYPTPDMCSEIVDWMEMMHNIDDAVGMCCGMSSFCLKPPYHIHNYPKLISAAT
GMDLDEDGLKEIANRNRNLHRAYNNRKGIRRADEKPPTDHWKKRFPELEEELLSTYYRYKGWNEDGIPTREKLEELGLGY
VANDLEKRGILKNGEN

Sequences:

>Translated_656_residues
MRYAEAGYYLEIDLATGNIERVATDPKLMQLHLGGLGTSIKEHWDRVPPEVKAFDPENHLIFSTGLLNATPAFSANRSVV
TFVSPQSGTLAYPMMGGFFAAELKYAGYDKVIFKNKSPNWVYLYINNDKVEIRDASHLQGRGAVETQELIRKELNLPKAQ
VAAIGLAGENRVFTASIEQSRSSASRLGGGAVMGDKKIKAIAVRGTKDIYLARPEEFMEQMKGVTDYIKYRWANPIKDVM
TILSGIGSPQEMLHTDEKWHTENFAWGNARTRRRDFWTEEIDESWSKSQHAAVKRLISCFNCPTHCGALISHKDTPRYMA
KCFGKLTYAMAAYVDDLDFSWKILQRATEYGVDSFSTPQILAFAVELYEAGILTDKDFAGCPSDKEGRFFWLLDRVVRRE
GIGDVLADGVYFAARKIGNGAEAFDHNTIKKHEQLPVKLGTLDPLYFLMYATNEKISITQMEGQWPQSAFPTPEQREEFV
RDWPQIPHDKFKQWVLDWELRGEKAIPYYPTPDMCSEIVDWMEMMHNIDDAVGMCCGMSSFCLKPPYHIHNYPKLISAAT
GMDLDEDGLKEIANRNRNLHRAYNNRKGIRRADEKPPTDHWKKRFPELEEELLSTYYRYKGWNEDGIPTREKLEELGLGY
VANDLEKRGILKNGEN
>Mature_656_residues
MRYAEAGYYLEIDLATGNIERVATDPKLMQLHLGGLGTSIKEHWDRVPPEVKAFDPENHLIFSTGLLNATPAFSANRSVV
TFVSPQSGTLAYPMMGGFFAAELKYAGYDKVIFKNKSPNWVYLYINNDKVEIRDASHLQGRGAVETQELIRKELNLPKAQ
VAAIGLAGENRVFTASIEQSRSSASRLGGGAVMGDKKIKAIAVRGTKDIYLARPEEFMEQMKGVTDYIKYRWANPIKDVM
TILSGIGSPQEMLHTDEKWHTENFAWGNARTRRRDFWTEEIDESWSKSQHAAVKRLISCFNCPTHCGALISHKDTPRYMA
KCFGKLTYAMAAYVDDLDFSWKILQRATEYGVDSFSTPQILAFAVELYEAGILTDKDFAGCPSDKEGRFFWLLDRVVRRE
GIGDVLADGVYFAARKIGNGAEAFDHNTIKKHEQLPVKLGTLDPLYFLMYATNEKISITQMEGQWPQSAFPTPEQREEFV
RDWPQIPHDKFKQWVLDWELRGEKAIPYYPTPDMCSEIVDWMEMMHNIDDAVGMCCGMSSFCLKPPYHIHNYPKLISAAT
GMDLDEDGLKEIANRNRNLHRAYNNRKGIRRADEKPPTDHWKKRFPELEEELLSTYYRYKGWNEDGIPTREKLEELGLGY
VANDLEKRGILKNGEN

Specific function: Unknown

COG id: COG2414

COG function: function code C; Aldehyde:ferredoxin oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AOR/FOR family [H]

Homologues:

Organism=Escherichia coli, GI1787962, Length=738, Percent_Identity=26.4227642276423, Blast_Score=159, Evalue=5e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013985
- InterPro:   IPR013983
- InterPro:   IPR001203 [H]

Pfam domain/function: PF01314 AFOR_C; PF02730 AFOR_N [H]

EC number: =1.2.7.5 [H]

Molecular weight: Translated: 74807; Mature: 74807

Theoretical pI: Translated: 6.47; Mature: 6.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYAEAGYYLEIDLATGNIERVATDPKLMQLHLGGLGTSIKEHWDRVPPEVKAFDPENHL
CCCCCCCCEEEEEEECCCCHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCCEEECCCCCE
IFSTGLLNATPAFSANRSVVTFVSPQSGTLAYPMMGGFFAAELKYAGYDKVIFKNKSPNW
EEEECCCCCCCCCCCCCCEEEEECCCCCCEECHHHCCHHHHHHHHCCCCEEEEECCCCCE
VYLYINNDKVEIRDASHLQGRGAVETQELIRKELNLPKAQVAAIGLAGENRVFTASIEQS
EEEEEECCEEEEECCHHCCCCCCCHHHHHHHHHHCCCHHHEEEEEECCCCEEEEEEHHHH
RSSASRLGGGAVMGDKKIKAIAVRGTKDIYLARPEEFMEQMKGVTDYIKYRWANPIKDVM
HHHHHHCCCCEEECCCCEEEEEEECCCCEEEECHHHHHHHHHCHHHHHHHHCCCHHHHHH
TILSGIGSPQEMLHTDEKWHTENFAWGNARTRRRDFWTEEIDESWSKSQHAAVKRLISCF
HHHHCCCCCHHHHCCCCHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
NCPTHCGALISHKDTPRYMAKCFGKLTYAMAAYVDDLDFSWKILQRATEYGVDSFSTPQI
CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHH
LAFAVELYEAGILTDKDFAGCPSDKEGRFFWLLDRVVRREGIGDVLADGVYFAARKIGNG
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
AEAFDHNTIKKHEQLPVKLGTLDPLYFLMYATNEKISITQMEGQWPQSAFPTPEQREEFV
HHHHCCHHHHHHHCCCEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHH
RDWPQIPHDKFKQWVLDWELRGEKAIPYYPTPDMCSEIVDWMEMMHNIDDAVGMCCGMSS
HHCCCCCHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
FCLKPPYHIHNYPKLISAATGMDLDEDGLKEIANRNRNLHRAYNNRKGIRRADEKPPTDH
HHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCHHH
WKKRFPELEEELLSTYYRYKGWNEDGIPTREKLEELGLGYVANDLEKRGILKNGEN
HHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRYAEAGYYLEIDLATGNIERVATDPKLMQLHLGGLGTSIKEHWDRVPPEVKAFDPENHL
CCCCCCCCEEEEEEECCCCHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCCEEECCCCCE
IFSTGLLNATPAFSANRSVVTFVSPQSGTLAYPMMGGFFAAELKYAGYDKVIFKNKSPNW
EEEECCCCCCCCCCCCCCEEEEECCCCCCEECHHHCCHHHHHHHHCCCCEEEEECCCCCE
VYLYINNDKVEIRDASHLQGRGAVETQELIRKELNLPKAQVAAIGLAGENRVFTASIEQS
EEEEEECCEEEEECCHHCCCCCCCHHHHHHHHHHCCCHHHEEEEEECCCCEEEEEEHHHH
RSSASRLGGGAVMGDKKIKAIAVRGTKDIYLARPEEFMEQMKGVTDYIKYRWANPIKDVM
HHHHHHCCCCEEECCCCEEEEEEECCCCEEEECHHHHHHHHHCHHHHHHHHCCCHHHHHH
TILSGIGSPQEMLHTDEKWHTENFAWGNARTRRRDFWTEEIDESWSKSQHAAVKRLISCF
HHHHCCCCCHHHHCCCCHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
NCPTHCGALISHKDTPRYMAKCFGKLTYAMAAYVDDLDFSWKILQRATEYGVDSFSTPQI
CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHH
LAFAVELYEAGILTDKDFAGCPSDKEGRFFWLLDRVVRREGIGDVLADGVYFAARKIGNG
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
AEAFDHNTIKKHEQLPVKLGTLDPLYFLMYATNEKISITQMEGQWPQSAFPTPEQREEFV
HHHHCCHHHHHHHCCCEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHH
RDWPQIPHDKFKQWVLDWELRGEKAIPYYPTPDMCSEIVDWMEMMHNIDDAVGMCCGMSS
HHCCCCCHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
FCLKPPYHIHNYPKLISAATGMDLDEDGLKEIANRNRNLHRAYNNRKGIRRADEKPPTDH
HHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCHHH
WKKRFPELEEELLSTYYRYKGWNEDGIPTREKLEELGLGYVANDLEKRGILKNGEN
HHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]