| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
Click here to switch to the map view.
The map label for this gene is 197118943
Identifier: 197118943
GI number: 197118943
Start: 2976770
End: 2977615
Strand: Reverse
Name: 197118943
Synonym: Gbem_2566
Alternate gene names: NA
Gene position: 2977615-2976770 (Counterclockwise)
Preceding gene: 197118944
Following gene: 197118942
Centisome position: 64.52
GC content: 62.06
Gene sequence:
>846_bases ATGACGCTTACTCCCGACATACGGACCGCCGGCAGGGAACCTCTCATGATGCTGAACGTGGGTTGCGGCGACACATCGCA TCCTGACTGGACCAACCTGGACTTGCGGGGAAGCCGGTCGGTCGAGTGCCGGGACGTTACCCAGGGGCTTCCTTTCCCCG ACGAGAGCTTCGACGTGGTCTACCACTCCCACCTGCTGGAGCACCTGCTGCCGGAGAAGGCGCTCCCCTTTATGCGCGAG TGCCACCGTGTCCTGAAACCTGGCGGAACCCTCCGGATATTGGTGCCGGATCTGGAGCAGATAGCAAGGCTGTATCTGGA AAAACTCGGGCAGACGCCAGATGCGGCAGACGATTACGACTGGATGATGCTGGAGTTGTACGATCAGTGCGTCCGGGTCG ACAGCGGCGGGCGCATGGAGGAGTTCCTCCGCAGACCCGGGACCAGGCATTCCGCCTTCGTGGCGCAGAGAATGGGTGGC GAAGCTGCTGCCTATTGGGAAGAGATCCCCCCCGGCAGGCTCACCGCGGATCCGAAGGCCGCTTTGCGCCGCTGGCTCTG GAAGGTCAGGACGTTGCTGGCCGCATGGGGAGTTTTCCTGATTGCCGGCTCTCAAGGCAGGAGCGCCTTTGAAGCTGGGC TGTTCCGGGCTTCAGGCGAGATTCACCAGTGGATGTACGACCGGTTTTCGCTGGAACGCCTCATGACTGACGCCGGCTTT ATGGACCCCAGCGTGACGACGGCTTTCGAGAGCCGCATTCCCGGTTTTGCACGGTACGGACTGGACGTGGTAGATGGTGT CGTCCGCAAGCCCGATTCCCTGGTAATGGAAGGGGGCAAGCCGTGA
Upstream 100 bases:
>100_bases CGGATGCCACGGTTGCCGCCGCAATGGAAAAGTTTTTCAGGGAGCTGAACCCTGGGCTGTTCCGTTACCTACTGCGCAAA TTAACCACGAGATTCTCACT
Downstream 100 bases:
>100_bases ACCCACTTCTCATCAGTACCTTCGACATCTTCGGCGGAGCCGCCCGGGCCGCCTATCGGCTGCACGAGGGGTTAAGGCAA GCCGGCGTGGACAGCCGCAT
Product: type 11 SAM-dependent methyltransferase
Products: NA
Alternate protein names: Glycosyl Transferase Family Protein
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MTLTPDIRTAGREPLMMLNVGCGDTSHPDWTNLDLRGSRSVECRDVTQGLPFPDESFDVVYHSHLLEHLLPEKALPFMRE CHRVLKPGGTLRILVPDLEQIARLYLEKLGQTPDAADDYDWMMLELYDQCVRVDSGGRMEEFLRRPGTRHSAFVAQRMGG EAAAYWEEIPPGRLTADPKAALRRWLWKVRTLLAAWGVFLIAGSQGRSAFEAGLFRASGEIHQWMYDRFSLERLMTDAGF MDPSVTTAFESRIPGFARYGLDVVDGVVRKPDSLVMEGGKP
Sequences:
>Translated_281_residues MTLTPDIRTAGREPLMMLNVGCGDTSHPDWTNLDLRGSRSVECRDVTQGLPFPDESFDVVYHSHLLEHLLPEKALPFMRE CHRVLKPGGTLRILVPDLEQIARLYLEKLGQTPDAADDYDWMMLELYDQCVRVDSGGRMEEFLRRPGTRHSAFVAQRMGG EAAAYWEEIPPGRLTADPKAALRRWLWKVRTLLAAWGVFLIAGSQGRSAFEAGLFRASGEIHQWMYDRFSLERLMTDAGF MDPSVTTAFESRIPGFARYGLDVVDGVVRKPDSLVMEGGKP >Mature_280_residues TLTPDIRTAGREPLMMLNVGCGDTSHPDWTNLDLRGSRSVECRDVTQGLPFPDESFDVVYHSHLLEHLLPEKALPFMREC HRVLKPGGTLRILVPDLEQIARLYLEKLGQTPDAADDYDWMMLELYDQCVRVDSGGRMEEFLRRPGTRHSAFVAQRMGGE AAAYWEEIPPGRLTADPKAALRRWLWKVRTLLAAWGVFLIAGSQGRSAFEAGLFRASGEIHQWMYDRFSLERLMTDAGFM DPSVTTAFESRIPGFARYGLDVVDGVVRKPDSLVMEGGKP
Specific function: Unknown
COG id: COG4627
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31701; Mature: 31569
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLTPDIRTAGREPLMMLNVGCGDTSHPDWTNLDLRGSRSVECRDVTQGLPFPDESFDVV CCCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHH YHSHLLEHLLPEKALPFMRECHRVLKPGGTLRILVPDLEQIARLYLEKLGQTPDAADDYD HHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCHH WMMLELYDQCVRVDSGGRMEEFLRRPGTRHSAFVAQRMGGEAAAYWEEIPPGRLTADPKA HHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHH ALRRWLWKVRTLLAAWGVFLIAGSQGRSAFEAGLFRASGEIHQWMYDRFSLERLMTDAGF HHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC MDPSVTTAFESRIPGFARYGLDVVDGVVRKPDSLVMEGGKP CCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHCCCCCC >Mature Secondary Structure TLTPDIRTAGREPLMMLNVGCGDTSHPDWTNLDLRGSRSVECRDVTQGLPFPDESFDVV CCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHH YHSHLLEHLLPEKALPFMRECHRVLKPGGTLRILVPDLEQIARLYLEKLGQTPDAADDYD HHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCHH WMMLELYDQCVRVDSGGRMEEFLRRPGTRHSAFVAQRMGGEAAAYWEEIPPGRLTADPKA HHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHH ALRRWLWKVRTLLAAWGVFLIAGSQGRSAFEAGLFRASGEIHQWMYDRFSLERLMTDAGF HHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC MDPSVTTAFESRIPGFARYGLDVVDGVVRKPDSLVMEGGKP CCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA