Click here to switch to the map view.

The map label for this gene is secF-2 [H]

Identifier: 197118809

GI number: 197118809

Start: 2819947

End: 2820852

Strand: Reverse

Name: secF-2 [H]

Synonym: Gbem_2432

Alternate gene names: 197118809

Gene position: 2820852-2819947 (Counterclockwise)

Preceding gene: 197118810

Following gene: 197118808

Centisome position: 61.12

GC content: 57.95

Gene sequence:

>906_bases
ATGGAACTTCTGAGAAATACCAACATAGATTTCATGGGGTTGAGGAAGATCTCCTTCATCATCTCCGGCATCGTCGCCAT
CGTCGGCATCCTCGGCGTCATCGCCATCGGGCGCGGCACGGCCAACATGGGGATCGACTTCTCCGGCGGCATCGCCATGC
AGGTGAAATTCAACCAGCCGGTGACCACGCAGGGCGTGCGCGACGCGCTTAGCAAGGGTGGCATCCACGAAGTCGAGCTC
CAGGAGATTACCGGCGGCAACCAGATCCTGGTCAAGATGCACAAATCCGAGAAGTCGGCGCAAAACGTCGAGGACGCGCT
CAAACAGAATCTGGCCGGCAATGCCTTCACCGTGGAAAGCTCCACCGAGATCGGCCCCTCCATCGGTGAGAAACTGAAAA
AGGACACCCTGATCGCCGTGGCGCTCTCGATGCTCGGGATCATCCTCTACATCGCCTGGCGCTTCGACTTCAAGTTCGGT
GTGGGCGCCGTCGTCGCCACCATGCACGACGTTCTCGCCATGATCGCGGTCTTCTACGTGCTGCACAAGGAGGTCAACAT
CCTCCTGATCACAGCGGTCCTCACCATTGCCGGCTACTCGCTGACCGACACCGTCGTCGTCTTCGACCGTATCCGCGAGA
ACATGCACAAAAGCCTCAAGGATCCGATGTTCGTCATCTTCAACCGGAGCATCAACGAGACGCTTTCGCGTACCATCATC
ACCTCGGTCACCACTTTCCTGTCTGCTGTTTCCCTCTACCTCTTCGGCGGCGAGGTAATTAACGACTTCGCCTTTGCGCT
CGTAATCGGCGTGCTGGTGGCAACCTATTCATCCATTTTCGTCGCCAGCCCGATCGTCGCGCTCTGGGAGAAATCTTCGG
AAACGCCGGAAGCGAAGGCGGCCTAA

Upstream 100 bases:

>100_bases
TCATCAACCTTTTCACGTCGCTCGTCTCCACCAAGGTCATCTTTGACGCCTACCTGGAGCGTGCCCACGTGAAGAGACTC
AGCATATAAGGGGGAGACCA

Downstream 100 bases:

>100_bases
GGAGGCATCGTGAGCAAGGAAAATTTACTCACCGTAGCAGTGGCTCTGATCGTCGGCATGCTCGGCGGCTACATCATCTT
CAACGTGGCCGGCAACAAGA

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MELLRNTNIDFMGLRKISFIISGIVAIVGILGVIAIGRGTANMGIDFSGGIAMQVKFNQPVTTQGVRDALSKGGIHEVEL
QEITGGNQILVKMHKSEKSAQNVEDALKQNLAGNAFTVESSTEIGPSIGEKLKKDTLIAVALSMLGIILYIAWRFDFKFG
VGAVVATMHDVLAMIAVFYVLHKEVNILLITAVLTIAGYSLTDTVVVFDRIRENMHKSLKDPMFVIFNRSINETLSRTII
TSVTTFLSAVSLYLFGGEVINDFAFALVIGVLVATYSSIFVASPIVALWEKSSETPEAKAA

Sequences:

>Translated_301_residues
MELLRNTNIDFMGLRKISFIISGIVAIVGILGVIAIGRGTANMGIDFSGGIAMQVKFNQPVTTQGVRDALSKGGIHEVEL
QEITGGNQILVKMHKSEKSAQNVEDALKQNLAGNAFTVESSTEIGPSIGEKLKKDTLIAVALSMLGIILYIAWRFDFKFG
VGAVVATMHDVLAMIAVFYVLHKEVNILLITAVLTIAGYSLTDTVVVFDRIRENMHKSLKDPMFVIFNRSINETLSRTII
TSVTTFLSAVSLYLFGGEVINDFAFALVIGVLVATYSSIFVASPIVALWEKSSETPEAKAA
>Mature_301_residues
MELLRNTNIDFMGLRKISFIISGIVAIVGILGVIAIGRGTANMGIDFSGGIAMQVKFNQPVTTQGVRDALSKGGIHEVEL
QEITGGNQILVKMHKSEKSAQNVEDALKQNLAGNAFTVESSTEIGPSIGEKLKKDTLIAVALSMLGIILYIAWRFDFKFG
VGAVVATMHDVLAMIAVFYVLHKEVNILLITAVLTIAGYSLTDTVVVFDRIRENMHKSLKDPMFVIFNRSINETLSRTII
TSVTTFLSAVSLYLFGGEVINDFAFALVIGVLVATYSSIFVASPIVALWEKSSETPEAKAA

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=282, Percent_Identity=34.7517730496454, Blast_Score=177, Evalue=5e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 32563; Mature: 32563

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLRNTNIDFMGLRKISFIISGIVAIVGILGVIAIGRGTANMGIDFSGGIAMQVKFNQP
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCEEEEEEECCC
VTTQGVRDALSKGGIHEVELQEITGGNQILVKMHKSEKSAQNVEDALKQNLAGNAFTVES
CCHHHHHHHHHCCCCCEEEHHCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCEEEECC
STEIGPSIGEKLKKDTLIAVALSMLGIILYIAWRFDFKFGVGAVVATMHDVLAMIAVFYV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LHKEVNILLITAVLTIAGYSLTDTVVVFDRIRENMHKSLKDPMFVIFNRSINETLSRTII
HHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHH
TSVTTFLSAVSLYLFGGEVINDFAFALVIGVLVATYSSIFVASPIVALWEKSSETPEAKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
A
C
>Mature Secondary Structure
MELLRNTNIDFMGLRKISFIISGIVAIVGILGVIAIGRGTANMGIDFSGGIAMQVKFNQP
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCEEEEEEECCC
VTTQGVRDALSKGGIHEVELQEITGGNQILVKMHKSEKSAQNVEDALKQNLAGNAFTVES
CCHHHHHHHHHCCCCCEEEHHCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCEEEECC
STEIGPSIGEKLKKDTLIAVALSMLGIILYIAWRFDFKFGVGAVVATMHDVLAMIAVFYV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LHKEVNILLITAVLTIAGYSLTDTVVVFDRIRENMHKSLKDPMFVIFNRSINETLSRTII
HHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHH
TSVTTFLSAVSLYLFGGEVINDFAFALVIGVLVATYSSIFVASPIVALWEKSSETPEAKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA