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The map label for this gene is secD-2 [H]

Identifier: 197118810

GI number: 197118810

Start: 2820864

End: 2822462

Strand: Reverse

Name: secD-2 [H]

Synonym: Gbem_2433

Alternate gene names: 197118810

Gene position: 2822462-2820864 (Counterclockwise)

Preceding gene: 197118811

Following gene: 197118809

Centisome position: 61.16

GC content: 62.29

Gene sequence:

>1599_bases
ATGAAGGGTTATACCTGGCGCATCTCTTTAATTCTCGTCTTTATCATCGCCTCGTTCGTCTACCTGACGCCGACGCTTGT
CGACACGCTCCCCTCCTGGTGGAGCGGGCTGCTCCCCAAGGACAAGATCCACCTGGGTCTCGACCTGCAGGGGGGTACCC
ATCTGGTAATGGGGGTCGAAACCGAGAAGGCCGTCGAAGGGTCGCTTGACCTGATCGCGACCGACCTGGAAGACTCGCTT
ACCCAGCAGAACCTCCGCTACAAGAGCATCGCCCGCGTCGGCAACGACAAGGTGCAGCTCACCCTGTACGATCGCAGCAG
CGCCGACACAGCACAGGCGCTGATCAAGAAGAAGTACCCCGACATGCAGACCCTCCCCGCTACCGATGAAGGGGGCTTCA
TCGGGATGCAGGTCCGCATCAACGAGAAAGAGGCACAGGTGCGCAAAGACCGCGCCGTGGCCCAGGCCCTTGAGACCATC
AGGAACAGGATCGACCAGTTCGGCGTCTCCGAGCCGGTGATCCAGCGCGAGGGGCTGACCAACATCGTGGTGCAGCTCCC
GGGCATCAAGGATCCCAAGCGCGCCATCGACCTGATCGGCAAGACCGCCCGCCTGGAGTTCAAGCTGGTGGACGAGACCA
TCAACGCCGCCACCGCCACCGCTTCCGGCCTTCCGGCGGACGACGAGCTCCTCTACGAGAAGAAGACGGACGCGACGACC
GGCGCGGTCTCCGAGACCCCGATTGTGGTCAAGAGGAAGGCGATCATCACCGGCGACCTCCTGACCGATGCCCAGATCCG
CATCGACTCCCAGTACAACCAGCCCTACGTCGCCATCGACTTCAACTCGACCGGCGCCCGGCTCTTCGACCAGGTGACCG
CGGCCAACGTCGGCAAGCGTTTCGCCATCGTGCTCGACAACAACGTCTACTCCGCCCCCGTGATCCGCGAGAGGATCTCC
GGCGGCAGCGCCCAGATCTCCGGTTCCTTCACCGAGAAGGAAGCGGCCGACCTCGCCATCGTTTTGCGCGCAGGTTCGCT
CCCCGCGCCGGTCAAGATCCTGCAGAACGTAACGGTAGGACCTTCCCTGGGTAAGGACTCGATCCACAAGGGGCTCATGG
CCGGTCTCATCGGCGTTTTGCTGGTGGTCGGCTTCATGGCGATCTACTACAAGATTTGCGGCATGGTCGCCAACTTCGGG
ATGGTGCTCAACATCCTCTTCCTGATGGGTGCTCTCTCCGCGCTGGGCGCTACGCTCACCCTCCCGGGCATCGCCGCTAT
CGTCCTTCTGGTAGGCATGTCGGTCGACTCCAACGTCCTCATCTTCGAGAGGATCAGGGAGGAGCTGCGGCTCGGCAAGA
CGCCGCACGCGGCGCTCGACTCCGGCTACGACAAGGCGTTTCTCACCATCATGGACTCGCACGTGACCGCCCTGATCACC
GCGGCAGTGCTCTTCCAGTTCGGCACCGGCCCGGTCAAGGGGTTCGCGGTCTCCCTGAGCCTCGGTATCATCATCAACCT
TTTCACGTCGCTCGTCTCCACCAAGGTCATCTTTGACGCCTACCTGGAGCGTGCCCACGTGAAGAGACTCAGCATATAA

Upstream 100 bases:

>100_bases
GATTGCCCCCGGCGTCAACGTCAGGATCAACAAGGGTTACATTGCATCTATCAAGCAGGACTAGTGCACTGATCCAATTT
TTCCGAAAGGAGCTTTTCCC

Downstream 100 bases:

>100_bases
GGGGGAGACCAATGGAACTTCTGAGAAATACCAACATAGATTTCATGGGGTTGAGGAAGATCTCCTTCATCATCTCCGGC
ATCGTCGCCATCGTCGGCAT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 532; Mature: 532

Protein sequence:

>532_residues
MKGYTWRISLILVFIIASFVYLTPTLVDTLPSWWSGLLPKDKIHLGLDLQGGTHLVMGVETEKAVEGSLDLIATDLEDSL
TQQNLRYKSIARVGNDKVQLTLYDRSSADTAQALIKKKYPDMQTLPATDEGGFIGMQVRINEKEAQVRKDRAVAQALETI
RNRIDQFGVSEPVIQREGLTNIVVQLPGIKDPKRAIDLIGKTARLEFKLVDETINAATATASGLPADDELLYEKKTDATT
GAVSETPIVVKRKAIITGDLLTDAQIRIDSQYNQPYVAIDFNSTGARLFDQVTAANVGKRFAIVLDNNVYSAPVIRERIS
GGSAQISGSFTEKEAADLAIVLRAGSLPAPVKILQNVTVGPSLGKDSIHKGLMAGLIGVLLVVGFMAIYYKICGMVANFG
MVLNILFLMGALSALGATLTLPGIAAIVLLVGMSVDSNVLIFERIREELRLGKTPHAALDSGYDKAFLTIMDSHVTALIT
AAVLFQFGTGPVKGFAVSLSLGIIINLFTSLVSTKVIFDAYLERAHVKRLSI

Sequences:

>Translated_532_residues
MKGYTWRISLILVFIIASFVYLTPTLVDTLPSWWSGLLPKDKIHLGLDLQGGTHLVMGVETEKAVEGSLDLIATDLEDSL
TQQNLRYKSIARVGNDKVQLTLYDRSSADTAQALIKKKYPDMQTLPATDEGGFIGMQVRINEKEAQVRKDRAVAQALETI
RNRIDQFGVSEPVIQREGLTNIVVQLPGIKDPKRAIDLIGKTARLEFKLVDETINAATATASGLPADDELLYEKKTDATT
GAVSETPIVVKRKAIITGDLLTDAQIRIDSQYNQPYVAIDFNSTGARLFDQVTAANVGKRFAIVLDNNVYSAPVIRERIS
GGSAQISGSFTEKEAADLAIVLRAGSLPAPVKILQNVTVGPSLGKDSIHKGLMAGLIGVLLVVGFMAIYYKICGMVANFG
MVLNILFLMGALSALGATLTLPGIAAIVLLVGMSVDSNVLIFERIREELRLGKTPHAALDSGYDKAFLTIMDSHVTALIT
AAVLFQFGTGPVKGFAVSLSLGIIINLFTSLVSTKVIFDAYLERAHVKRLSI
>Mature_532_residues
MKGYTWRISLILVFIIASFVYLTPTLVDTLPSWWSGLLPKDKIHLGLDLQGGTHLVMGVETEKAVEGSLDLIATDLEDSL
TQQNLRYKSIARVGNDKVQLTLYDRSSADTAQALIKKKYPDMQTLPATDEGGFIGMQVRINEKEAQVRKDRAVAQALETI
RNRIDQFGVSEPVIQREGLTNIVVQLPGIKDPKRAIDLIGKTARLEFKLVDETINAATATASGLPADDELLYEKKTDATT
GAVSETPIVVKRKAIITGDLLTDAQIRIDSQYNQPYVAIDFNSTGARLFDQVTAANVGKRFAIVLDNNVYSAPVIRERIS
GGSAQISGSFTEKEAADLAIVLRAGSLPAPVKILQNVTVGPSLGKDSIHKGLMAGLIGVLLVVGFMAIYYKICGMVANFG
MVLNILFLMGALSALGATLTLPGIAAIVLLVGMSVDSNVLIFERIREELRLGKTPHAALDSGYDKAFLTIMDSHVTALIT
AAVLFQFGTGPVKGFAVSLSLGIIINLFTSLVSTKVIFDAYLERAHVKRLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=534, Percent_Identity=35.7677902621723, Blast_Score=324, Evalue=7e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 57518; Mature: 57518

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGYTWRISLILVFIIASFVYLTPTLVDTLPSWWSGLLPKDKIHLGLDLQGGTHLVMGVE
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEECC
TEKAVEGSLDLIATDLEDSLTQQNLRYKSIARVGNDKVQLTLYDRSSADTAQALIKKKYP
HHHHHCCCHHEEEECHHHHHHHHCCHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHCCC
DMQTLPATDEGGFIGMQVRINEKEAQVRKDRAVAQALETIRNRIDQFGVSEPVIQREGLT
CCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCC
NIVVQLPGIKDPKRAIDLIGKTARLEFKLVDETINAATATASGLPADDELLYEKKTDATT
EEEEECCCCCCHHHHHHHHCCCCEEEEEEECHHHHHHHHCCCCCCCCHHHHEECCCCCCC
GAVSETPIVVKRKAIITGDLLTDAQIRIDSQYNQPYVAIDFNSTGARLFDQVTAANVGKR
CCCCCCCEEEEEEEEEECCCCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHCCCCE
FAIVLDNNVYSAPVIRERISGGSAQISGSFTEKEAADLAIVLRAGSLPAPVKILQNVTVG
EEEEEECCCCCCHHHHHHHCCCCEEECCCCCCHHHCCEEEEEECCCCCHHHHHHHCCCCC
PSLGKDSIHKGLMAGLIGVLLVVGFMAIYYKICGMVANFGMVLNILFLMGALSALGATLT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LPGIAAIVLLVGMSVDSNVLIFERIREELRLGKTPHAALDSGYDKAFLTIMDSHVTALIT
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHCCCCCCEEEHHHHHHHHHHHH
AAVLFQFGTGPVKGFAVSLSLGIIINLFTSLVSTKVIFDAYLERAHVKRLSI
HHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKGYTWRISLILVFIIASFVYLTPTLVDTLPSWWSGLLPKDKIHLGLDLQGGTHLVMGVE
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEECC
TEKAVEGSLDLIATDLEDSLTQQNLRYKSIARVGNDKVQLTLYDRSSADTAQALIKKKYP
HHHHHCCCHHEEEECHHHHHHHHCCHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHCCC
DMQTLPATDEGGFIGMQVRINEKEAQVRKDRAVAQALETIRNRIDQFGVSEPVIQREGLT
CCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCC
NIVVQLPGIKDPKRAIDLIGKTARLEFKLVDETINAATATASGLPADDELLYEKKTDATT
EEEEECCCCCCHHHHHHHHCCCCEEEEEEECHHHHHHHHCCCCCCCCHHHHEECCCCCCC
GAVSETPIVVKRKAIITGDLLTDAQIRIDSQYNQPYVAIDFNSTGARLFDQVTAANVGKR
CCCCCCCEEEEEEEEEECCCCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHCCCCE
FAIVLDNNVYSAPVIRERISGGSAQISGSFTEKEAADLAIVLRAGSLPAPVKILQNVTVG
EEEEEECCCCCCHHHHHHHCCCCEEECCCCCCHHHCCEEEEEECCCCCHHHHHHHCCCCC
PSLGKDSIHKGLMAGLIGVLLVVGFMAIYYKICGMVANFGMVLNILFLMGALSALGATLT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LPGIAAIVLLVGMSVDSNVLIFERIREELRLGKTPHAALDSGYDKAFLTIMDSHVTALIT
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHCCCCCCEEEHHHHHHHHHHHH
AAVLFQFGTGPVKGFAVSLSLGIIINLFTSLVSTKVIFDAYLERAHVKRLSI
HHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA