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The map label for this gene is ydeM [C]

Identifier: 197118770

GI number: 197118770

Start: 2770098

End: 2771438

Strand: Direct

Name: ydeM [C]

Synonym: Gbem_2391

Alternate gene names: 197118770

Gene position: 2770098-2771438 (Clockwise)

Preceding gene: 197118769

Following gene: 197118772

Centisome position: 60.02

GC content: 61.22

Gene sequence:

>1341_bases
ATGGAACTATCCAGGTATTTAAAGATATATCCCGACCAGACGCGCCCAGATCACCTGCTTTTGTTCTCCACCTTCCAGCT
CTCTGTTGCACGCGTTCCCCGCGCCACCCTCGATGAAGCGCTGCAAGGCCCCCCTTCTGCCGAGCGCGACGCGCTGGTGC
GACTGGGGATGCTGACCCCGGACCCTGCAGCGGAGAGGGAGAGGATACGGCTTTTTTTAGATCGCGCCAATGAGCGTGCT
CGCCATTTCAAGGCGATGGTGGTCTTGAACCTCGACTGCAACCTCGACTGCGGCTACTGCTATGAAAGGGAATTCCGCGG
CGGGCATTACATGTCCGACGCCACGGCGGACCTTCTGGTCGAGACGCTGCTCCGGGAAAGGATCTCCAAGGAGTGGGACG
TTACCCTATCTTTTTATGGCGGGGAGCCGTTGCTCTCCCAGGACCTGATCCGGCGAATCTCAGCGCCGCTATTGCAGGGG
GCCCGCAACCACGGGGTGCGGTATGGCTTCAACCTGGTTACCAACGGCACACTCCTGAACCGTGACACTGCGTTAGAGCT
CATGCCGCTCGGGTTGCTGGGAGCGAAGTTCACCCTGGACGGTCCGCGCGAAATCCACGACGGCGAGCGTCCCTACGCTT
CCGGCGCTGGGAGTTTCGACGCCATCGTGGACAACCTCTCTGAGATCTGCGAGCTCCTGCCGATCCAGATCGGCGGAAAC
TTCCGGCGCGAGAACTACCGCGACTTCCCGCGCCTTCTGGACCAGCTCGCCTCTCGCGGCATCACGGGAGAAAAGCTACA
ACTGGTCCAGTTCACACCGGTGACGCCGAAGGCCGGTTGCTCCGAGTATGGCTCGGGATGCGCCTCGTCGAGCGAGCCGT
GGCTTGTGGAGGCCCTCCTTTACCTGAGGGAGGAGATACTTTTCAGGGGGTACAGGACCGGGAAACCTTCGGTCTCCGCC
TGCATCGTCGAATTCCAGGACAACATCGTGGTCAACTGCGAGGGTCGATACTACAAGTGCCCGGCTCTCATGGGATGGGA
AGGATACAGCGTGGGGAGCCTCGCCGAGGGGATTAAGGACTACCGCCAGTCGCACGGCATCGGGAACTGGCAGGCCGACG
CCTGCCTGGACTGCTGCTATCTTCCCCTTTGCTTCGGAGGTTGCCGCTTCCTTACCAAACTGCACGGAAAGAGCCTCGAC
GAAGTGGACTGCAGGCGGAAGTTCCTCGACGCCGCGTTGGAACAGTTGCTGCTGCAGAACATGGCCTACCCGCACAACTC
CGCGAAGAAGAAGCCCACCACCCCGGCCTCCCACTCCATCACTGCGTCCGCCCCCTACTGA

Upstream 100 bases:

>100_bases
CTATGGCACGCCTCCCTCTGTGGATGGCGTGCCTCCTTTACAGCCCCGGCACACCCAGTTATGACATCGCCAGCACCCCA
GATACGACCCGGAACTCGAC

Downstream 100 bases:

>100_bases
CGCTCCTGCTTCAACCTCTTGTTCAGTGTGGGGCGCGTCAGTCCGAGGAGTTCCGCCGCCTGTGTCTGGTTGCCGCCGGT
AAGCTTCATCGCCTCGGCGA

Product: radical SAM protein

Products: NA

Alternate protein names: Radical SAM Domain Protein; Arylsulfatase Regulator; Radical SAM Family Protein; Heme Biosynthesis Family Protein; Transcriptional Regulator; Arylsulfatase Regulator Fe-S Oxidoreductase; AstB/ChuR-Related Protein; Radical Sam Domain Protein; Heme Biosynthesis Related Protein; Arylsulfatase Regulatory Protein; Fe-S Oxidoreductase; Radical Sam Family Protein; Radical SAM-Family Protein; Arylsulfatase-Activating AtsB; Transcriptional Regulatory Protein; Regulatory Protein; Radical Sam Protein; Qinohemoprotein Amine Dehydrogenase; Heme Biosynthesis; Radical SAM

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MELSRYLKIYPDQTRPDHLLLFSTFQLSVARVPRATLDEALQGPPSAERDALVRLGMLTPDPAAERERIRLFLDRANERA
RHFKAMVVLNLDCNLDCGYCYEREFRGGHYMSDATADLLVETLLRERISKEWDVTLSFYGGEPLLSQDLIRRISAPLLQG
ARNHGVRYGFNLVTNGTLLNRDTALELMPLGLLGAKFTLDGPREIHDGERPYASGAGSFDAIVDNLSEICELLPIQIGGN
FRRENYRDFPRLLDQLASRGITGEKLQLVQFTPVTPKAGCSEYGSGCASSSEPWLVEALLYLREEILFRGYRTGKPSVSA
CIVEFQDNIVVNCEGRYYKCPALMGWEGYSVGSLAEGIKDYRQSHGIGNWQADACLDCCYLPLCFGGCRFLTKLHGKSLD
EVDCRRKFLDAALEQLLLQNMAYPHNSAKKKPTTPASHSITASAPY

Sequences:

>Translated_446_residues
MELSRYLKIYPDQTRPDHLLLFSTFQLSVARVPRATLDEALQGPPSAERDALVRLGMLTPDPAAERERIRLFLDRANERA
RHFKAMVVLNLDCNLDCGYCYEREFRGGHYMSDATADLLVETLLRERISKEWDVTLSFYGGEPLLSQDLIRRISAPLLQG
ARNHGVRYGFNLVTNGTLLNRDTALELMPLGLLGAKFTLDGPREIHDGERPYASGAGSFDAIVDNLSEICELLPIQIGGN
FRRENYRDFPRLLDQLASRGITGEKLQLVQFTPVTPKAGCSEYGSGCASSSEPWLVEALLYLREEILFRGYRTGKPSVSA
CIVEFQDNIVVNCEGRYYKCPALMGWEGYSVGSLAEGIKDYRQSHGIGNWQADACLDCCYLPLCFGGCRFLTKLHGKSLD
EVDCRRKFLDAALEQLLLQNMAYPHNSAKKKPTTPASHSITASAPY
>Mature_446_residues
MELSRYLKIYPDQTRPDHLLLFSTFQLSVARVPRATLDEALQGPPSAERDALVRLGMLTPDPAAERERIRLFLDRANERA
RHFKAMVVLNLDCNLDCGYCYEREFRGGHYMSDATADLLVETLLRERISKEWDVTLSFYGGEPLLSQDLIRRISAPLLQG
ARNHGVRYGFNLVTNGTLLNRDTALELMPLGLLGAKFTLDGPREIHDGERPYASGAGSFDAIVDNLSEICELLPIQIGGN
FRRENYRDFPRLLDQLASRGITGEKLQLVQFTPVTPKAGCSEYGSGCASSSEPWLVEALLYLREEILFRGYRTGKPSVSA
CIVEFQDNIVVNCEGRYYKCPALMGWEGYSVGSLAEGIKDYRQSHGIGNWQADACLDCCYLPLCFGGCRFLTKLHGKSLD
EVDCRRKFLDAALEQLLLQNMAYPHNSAKKKPTTPASHSITASAPY

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081923, Length=343, Percent_Identity=24.4897959183673, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49924; Mature: 49924

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS01305 MOAA_NIFB_PQQE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELSRYLKIYPDQTRPDHLLLFSTFQLSVARVPRATLDEALQGPPSAERDALVRLGMLTP
CCCCCCEEECCCCCCCCEEEEEEHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHEECCCCC
DPAAERERIRLFLDRANERARHFKAMVVLNLDCNLDCGYCYEREFRGGHYMSDATADLLV
CCCHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCHHHCCCCCCCCHHHHHHHH
ETLLRERISKEWDVTLSFYGGEPLLSQDLIRRISAPLLQGARNHGVRYGFNLVTNGTLLN
HHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEC
RDTALELMPLGLLGAKFTLDGPREIHDGERPYASGAGSFDAIVDNLSEICELLPIQIGGN
CCCCHHEEEHHHCCCEEECCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHCCCC
FRRENYRDFPRLLDQLASRGITGEKLQLVQFTPVTPKAGCSEYGSGCASSSEPWLVEALL
CCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHCCCCCCCCCCHHHHHHH
YLREEILFRGYRTGKPSVSACIVEFQDNIVVNCEGRYYKCPALMGWEGYSVGSLAEGIKD
HHHHHHHHHCCCCCCCCHHEEEEEECCCEEEEECCCEEECCEEECCCCCCHHHHHHHHHH
YRQSHGIGNWQADACLDCCYLPLCFGGCRFLTKLHGKSLDEVDCRRKFLDAALEQLLLQN
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
MAYPHNSAKKKPTTPASHSITASAPY
HCCCCCCCCCCCCCCCCCCEECCCCC
>Mature Secondary Structure
MELSRYLKIYPDQTRPDHLLLFSTFQLSVARVPRATLDEALQGPPSAERDALVRLGMLTP
CCCCCCEEECCCCCCCCEEEEEEHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHEECCCCC
DPAAERERIRLFLDRANERARHFKAMVVLNLDCNLDCGYCYEREFRGGHYMSDATADLLV
CCCHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCHHHCCCCCCCCHHHHHHHH
ETLLRERISKEWDVTLSFYGGEPLLSQDLIRRISAPLLQGARNHGVRYGFNLVTNGTLLN
HHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEC
RDTALELMPLGLLGAKFTLDGPREIHDGERPYASGAGSFDAIVDNLSEICELLPIQIGGN
CCCCHHEEEHHHCCCEEECCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHCCCC
FRRENYRDFPRLLDQLASRGITGEKLQLVQFTPVTPKAGCSEYGSGCASSSEPWLVEALL
CCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHCCCCCCCCCCHHHHHHH
YLREEILFRGYRTGKPSVSACIVEFQDNIVVNCEGRYYKCPALMGWEGYSVGSLAEGIKD
HHHHHHHHHCCCCCCCCHHEEEEEECCCEEEEECCCEEECCEEECCCCCCHHHHHHHHHH
YRQSHGIGNWQADACLDCCYLPLCFGGCRFLTKLHGKSLDEVDCRRKFLDAALEQLLLQN
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
MAYPHNSAKKKPTTPASHSITASAPY
HCCCCCCCCCCCCCCCCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA