Definition Geobacter bemidjiensis Bem chromosome, complete genome.
Accession NC_011146
Length 4,615,150

Click here to switch to the map view.

The map label for this gene is 197118772

Identifier: 197118772

GI number: 197118772

Start: 2773033

End: 2773590

Strand: Direct

Name: 197118772

Synonym: Gbem_2393

Alternate gene names: NA

Gene position: 2773033-2773590 (Clockwise)

Preceding gene: 197118770

Following gene: 197118773

Centisome position: 60.09

GC content: 61.83

Gene sequence:

>558_bases
TTGAACCCTAGAGCGTTACTTGAGAAATACTATGAGGACAACGACGCCGCCTTGGAGATCGTGTACAGACACAGTCGCAA
TGTCGCGGACAAGGCGCTTGCCATAGCCGTCACGGCGGGACTGCCGCAGGCCGAGCTGGACTTCATCGAGGAGGCCGCGC
TGCTCCACGACATCGGCGTCTCCCGCATCTATGCGCCAAAGCTCAACTGCTTCGGCAAGGCGCCCTACGTCTGGCACGGC
GTCATCGGCCGAGAGATCCTCGATGCCGAGGGGCTTCCGCGACACGCCATGGTCTGCGAGCGGCACATAGGGGTCGGGCT
CACCGCGGCGGACATCGTGGCGCAAAACCTGCGCCTGCCGGTACGGGAGATGTCGCCGGTCACAACCAGCGAGCGCATCG
TAGCCTTGGCCGATCTCTTCTTCTCCAAAAAGGGAGGGGAGTTGGACCTTGAGAAGAGCACCCAGCAGGTGCGCTGCGAC
CTGCTCAGGTTCGGCGCGGAAAAGGTGCAGATCTTCGAGAACTGGCTCAACGATTTCGGAGTCCGCGAATCAGCCTAG

Upstream 100 bases:

>100_bases
TGACAGACGTCCCGGGGTGTGACAGCGACAACGGTTGCAATGAAAGGCCGAATCGGCATAATCTAGAACCTGGAAAGGTA
AAATAGCAGTGGAGGAAGAT

Downstream 100 bases:

>100_bases
CCCGCCCCCCGCGGGGCCGCGGCTGCTGATTTATGATATACTCGATGCCGCCTTACTCATTAGAAACGATGTAAAATGTT
TCCAATCTGAGGCAGGGTCC

Product: metal-dependent phosphoesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MNPRALLEKYYEDNDAALEIVYRHSRNVADKALAIAVTAGLPQAELDFIEEAALLHDIGVSRIYAPKLNCFGKAPYVWHG
VIGREILDAEGLPRHAMVCERHIGVGLTAADIVAQNLRLPVREMSPVTTSERIVALADLFFSKKGGELDLEKSTQQVRCD
LLRFGAEKVQIFENWLNDFGVRESA

Sequences:

>Translated_185_residues
MNPRALLEKYYEDNDAALEIVYRHSRNVADKALAIAVTAGLPQAELDFIEEAALLHDIGVSRIYAPKLNCFGKAPYVWHG
VIGREILDAEGLPRHAMVCERHIGVGLTAADIVAQNLRLPVREMSPVTTSERIVALADLFFSKKGGELDLEKSTQQVRCD
LLRFGAEKVQIFENWLNDFGVRESA
>Mature_185_residues
MNPRALLEKYYEDNDAALEIVYRHSRNVADKALAIAVTAGLPQAELDFIEEAALLHDIGVSRIYAPKLNCFGKAPYVWHG
VIGREILDAEGLPRHAMVCERHIGVGLTAADIVAQNLRLPVREMSPVTTSERIVALADLFFSKKGGELDLEKSTQQVRCD
LLRFGAEKVQIFENWLNDFGVRESA

Specific function: Unknown

COG id: COG1418

COG function: function code R; Predicted HD superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004454
- InterPro:   IPR003607
- InterPro:   IPR006675 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20604; Mature: 20604

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPRALLEKYYEDNDAALEIVYRHSRNVADKALAIAVTAGLPQAELDFIEEAALLHDIGV
CCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCH
SRIYAPKLNCFGKAPYVWHGVIGREILDAEGLPRHAMVCERHIGVGLTAADIVAQNLRLP
HHEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCC
VREMSPVTTSERIVALADLFFSKKGGELDLEKSTQQVRCDLLRFGAEKVQIFENWLNDFG
HHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC
VRESA
CCCCC
>Mature Secondary Structure
MNPRALLEKYYEDNDAALEIVYRHSRNVADKALAIAVTAGLPQAELDFIEEAALLHDIGV
CCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCH
SRIYAPKLNCFGKAPYVWHGVIGREILDAEGLPRHAMVCERHIGVGLTAADIVAQNLRLP
HHEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCC
VREMSPVTTSERIVALADLFFSKKGGELDLEKSTQQVRCDLLRFGAEKVQIFENWLNDFG
HHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC
VRESA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]