| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118557
Identifier: 197118557
GI number: 197118557
Start: 2535511
End: 2536707
Strand: Direct
Name: 197118557
Synonym: Gbem_2176
Alternate gene names: NA
Gene position: 2535511-2536707 (Clockwise)
Preceding gene: 197118536
Following gene: 197118558
Centisome position: 54.94
GC content: 56.06
Gene sequence:
>1197_bases ATGAAGCGTCTACTGGGGAAGATCGACGAGGGGCTGCTCACTTCCGAGCAGCGTCCGATGCTGCGCTTCCTGATCATCCT CACCGCGGCTTCGACGATCGGGCTGCAGGGTTACACCATTCTTTTCAACAACTTTGCAGCCGAGATGGTGCACCTGGACG GTAGCCAGGTCGGCATGACGCAGTCGGTGCGGGAAATTCCGGGGCTACTGACGCTGCTGGTGGTCTTCGTGCTAATGTTC ATGCGCGAGCACAAACTGGCCGCGCTCTCGGTGCTGCTCTTGGGGCTCGGTACCGGTATCACCGCGCTCATTCCGTCCTA CGGCTGGGTGATCTTCACCACGGTAGTGATGAGCTTCGGTTTTCACTACTACGAGTCGACGAACCAGTCGCTCACGCTGC AGTACTTTTCCACCGCCGTGTCCCCCATTGTCTTTGGACGCCTCCGAGCGCTGGCAGCGGTTTCCAGCGTGGTAGCGGGT ATCATGGTCTACTGCCTGAGTTCAGTGGTGCAGTACCGGGGAATGTATCTGGCTATCGGCGCGGTGGTGGTCATCGCAGG CCTTTGGGGACTTTGCCAGAACCCCACCCACTCAGGGATCGTGCCCCAGCGCAAGAAGATGATACTGCGGCGCAGGTATT CGCTCTTTTACATCCTGACCCTTCTCTCCGGGGCCAGGCGGCAGATCTTCGTAGTCTTCTCGATACTGCTATTGGTGCAG GTGTTCCATTTCACGGTGCGGGAGATGACCATCCTTTTCATCGTGAACAACATCGTCGCCTATATCCTCAACTCTTTGAT AGGAAAGGCGATCAACCGTTTCGGCGAACGATTCATCTCCTCCTGCGAATACGCCGGTGTCATCGTCATCTTCCTGGTCT ATGCCTTCAGCACCTCGAAATATCTGGTCATGTTCATGTACATACTGGACAACATCCTCTACAATTTCGAGGTTTCGATC CGGACCTACTTTCAGAAGGTGGCAGACCCTGCCGACATATCCTCATCCATGTCTGTAGGTTTCACCATCAATCACATAGC CGCCGTTTTCCTCCCCGCCCTGGGCGGTTACTTCTGGATGTTGGACTACCGCATCCCATTCATCGGAGGCACCGTACTGG GTGTGATTTCCCTGATCGCGGCACAGTGGATGCGGGTACCTGAGAAGGCACCGAAGGCGGAGACGTCAGCTAGTTAA
Upstream 100 bases:
>100_bases CTTTGCGCCGCATTGGGTTCCCAAGCTGGAGCTTGGGAACCAGGAGCCCCCGAATCGTGGGCAACGCCGGATTGTCACAC AGCAAACGATGGAGAGTTAC
Downstream 100 bases:
>100_bases AAAGGAAAATAACGAAAGGTATGGCGGTAAGTAGATACGCAGATATGACAGTAAGGAGGTGTGCTGATGTTTAAGCGAAT AGACCACGTAGAGATCATTC
Product: major facilitator superfamily protein
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Transporter Facilitator Family; Transporter MFS Superfamily; Permease Of Facilitator Superfamily; Permease Facilitator Superfamily; Facilitator Superfamily Permease; MFS Protein Permease Component; Multidrug-Efflux Transporter MFS Family; Facilitator Family Transporter
Number of amino acids: Translated: 398; Mature: 398
Protein sequence:
>398_residues MKRLLGKIDEGLLTSEQRPMLRFLIILTAASTIGLQGYTILFNNFAAEMVHLDGSQVGMTQSVREIPGLLTLLVVFVLMF MREHKLAALSVLLLGLGTGITALIPSYGWVIFTTVVMSFGFHYYESTNQSLTLQYFSTAVSPIVFGRLRALAAVSSVVAG IMVYCLSSVVQYRGMYLAIGAVVVIAGLWGLCQNPTHSGIVPQRKKMILRRRYSLFYILTLLSGARRQIFVVFSILLLVQ VFHFTVREMTILFIVNNIVAYILNSLIGKAINRFGERFISSCEYAGVIVIFLVYAFSTSKYLVMFMYILDNILYNFEVSI RTYFQKVADPADISSSMSVGFTINHIAAVFLPALGGYFWMLDYRIPFIGGTVLGVISLIAAQWMRVPEKAPKAETSAS
Sequences:
>Translated_398_residues MKRLLGKIDEGLLTSEQRPMLRFLIILTAASTIGLQGYTILFNNFAAEMVHLDGSQVGMTQSVREIPGLLTLLVVFVLMF MREHKLAALSVLLLGLGTGITALIPSYGWVIFTTVVMSFGFHYYESTNQSLTLQYFSTAVSPIVFGRLRALAAVSSVVAG IMVYCLSSVVQYRGMYLAIGAVVVIAGLWGLCQNPTHSGIVPQRKKMILRRRYSLFYILTLLSGARRQIFVVFSILLLVQ VFHFTVREMTILFIVNNIVAYILNSLIGKAINRFGERFISSCEYAGVIVIFLVYAFSTSKYLVMFMYILDNILYNFEVSI RTYFQKVADPADISSSMSVGFTINHIAAVFLPALGGYFWMLDYRIPFIGGTVLGVISLIAAQWMRVPEKAPKAETSAS >Mature_398_residues MKRLLGKIDEGLLTSEQRPMLRFLIILTAASTIGLQGYTILFNNFAAEMVHLDGSQVGMTQSVREIPGLLTLLVVFVLMF MREHKLAALSVLLLGLGTGITALIPSYGWVIFTTVVMSFGFHYYESTNQSLTLQYFSTAVSPIVFGRLRALAAVSSVVAG IMVYCLSSVVQYRGMYLAIGAVVVIAGLWGLCQNPTHSGIVPQRKKMILRRRYSLFYILTLLSGARRQIFVVFSILLLVQ VFHFTVREMTILFIVNNIVAYILNSLIGKAINRFGERFISSCEYAGVIVIFLVYAFSTSKYLVMFMYILDNILYNFEVSI RTYFQKVADPADISSSMSVGFTINHIAAVFLPALGGYFWMLDYRIPFIGGTVLGVISLIAAQWMRVPEKAPKAETSAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44311; Mature: 44311
Theoretical pI: Translated: 9.87; Mature: 9.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRLLGKIDEGLLTSEQRPMLRFLIILTAASTIGLQGYTILFNNFAAEMVHLDGSQVGMT CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHH QSVREIPGLLTLLVVFVLMFMREHKLAALSVLLLGLGTGITALIPSYGWVIFTTVVMSFG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHC FHYYESTNQSLTLQYFSTAVSPIVFGRLRALAAVSSVVAGIMVYCLSSVVQYRGMYLAIG HHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH AVVVIAGLWGLCQNPTHSGIVPQRKKMILRRRYSLFYILTLLSGARRQIFVVFSILLLVQ HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH VFHFTVREMTILFIVNNIVAYILNSLIGKAINRFGERFISSCEYAGVIVIFLVYAFSTSK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHH YLVMFMYILDNILYNFEVSIRTYFQKVADPADISSSMSVGFTINHIAAVFLPALGGYFWM HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH LDYRIPFIGGTVLGVISLIAAQWMRVPEKAPKAETSAS HHCCCCHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MKRLLGKIDEGLLTSEQRPMLRFLIILTAASTIGLQGYTILFNNFAAEMVHLDGSQVGMT CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHH QSVREIPGLLTLLVVFVLMFMREHKLAALSVLLLGLGTGITALIPSYGWVIFTTVVMSFG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHC FHYYESTNQSLTLQYFSTAVSPIVFGRLRALAAVSSVVAGIMVYCLSSVVQYRGMYLAIG HHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH AVVVIAGLWGLCQNPTHSGIVPQRKKMILRRRYSLFYILTLLSGARRQIFVVFSILLLVQ HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH VFHFTVREMTILFIVNNIVAYILNSLIGKAINRFGERFISSCEYAGVIVIFLVYAFSTSK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHH YLVMFMYILDNILYNFEVSIRTYFQKVADPADISSSMSVGFTINHIAAVFLPALGGYFWM HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH LDYRIPFIGGTVLGVISLIAAQWMRVPEKAPKAETSAS HHCCCCHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA