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The map label for this gene is nifB [H]

Identifier: 197118462

GI number: 197118462

Start: 2405359

End: 2405688

Strand: Direct

Name: nifB [H]

Synonym: Gbem_2080

Alternate gene names: 197118462

Gene position: 2405359-2405688 (Clockwise)

Preceding gene: 197118461

Following gene: 197118463

Centisome position: 52.12

GC content: 62.12

Gene sequence:

>330_bases
ATGCTTTTCGCCGTTGCCTCAAAGGATGGCAAGGAAATAAACCAGCACTTCGGACACGTCGAGCGGTTCCTCATCTACCA
TGTGGAGGGCGATTCGGTCGCCTTGCTGGAGGAGCGGCCTGTGGAGAAGTACTGCCGCTTCGACCCTGACCACCCGCTGC
GTGCCCACACGCTGAGGGACACCGCCGACGCCCTCAAGGGGTGCCGTGCCGTGGTCTGCTCCATGATAGGGGAGGCCCCG
AAGGCAGAACTGGAGCGTCTGGGCGTTGAGCCGTACGTGGTGGAAGGCGAAATCGAGCCGATCCTGCGCGACCTGGCCAA
GGCTTTGTAA

Upstream 100 bases:

>100_bases
CTTCAGACCATTCCAGGTTTTCACTTAATCTCAATCTTAATCTCAATCTGGTTTATAGGTTCTACTCAATCTCTATCTCT
ATCTGGTTTTAGGGGGTTTT

Downstream 100 bases:

>100_bases
AACCAGATACAGATTAAGATTGAGATTGAGACTGAGAAAACCAAGAGAGGCAGATAAAGATAAAGATTAAAATTAAGGAA
ACCCCGGGTTTTGCCTCTTC

Product: nitrogenase molybdenum-iron cofactor biosynthesis protein NifB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 109

Protein sequence:

>109_residues
MLFAVASKDGKEINQHFGHVERFLIYHVEGDSVALLEERPVEKYCRFDPDHPLRAHTLRDTADALKGCRAVVCSMIGEAP
KAELERLGVEPYVVEGEIEPILRDLAKAL

Sequences:

>Translated_109_residues
MLFAVASKDGKEINQHFGHVERFLIYHVEGDSVALLEERPVEKYCRFDPDHPLRAHTLRDTADALKGCRAVVCSMIGEAP
KAELERLGVEPYVVEGEIEPILRDLAKAL
>Mature_109_residues
MLFAVASKDGKEINQHFGHVERFLIYHVEGDSVALLEERPVEKYCRFDPDHPLRAHTLRDTADALKGCRAVVCSMIGEAP
KAELERLGVEPYVVEGEIEPILRDLAKAL

Specific function: Probably involved in the synthesis of the Fe-Mo cofactor [H]

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the moaA/nifB/pqqE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003731
- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR005980
- InterPro:   IPR007197 [H]

Pfam domain/function: PF02579 Nitro_FeMo-Co; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 12241; Mature: 12241

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFAVASKDGKEINQHFGHVERFLIYHVEGDSVALLEERPVEKYCRFDPDHPLRAHTLRD
CEEEECCCCCHHHHHHHHHHHHHHEEEECCCCEEECCCCCHHHHHCCCCCCCCHHHHHHH
TADALKGCRAVVCSMIGEAPKAELERLGVEPYVVEGEIEPILRDLAKAL
HHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEECCCHHHHHHHHHHHC
>Mature Secondary Structure
MLFAVASKDGKEINQHFGHVERFLIYHVEGDSVALLEERPVEKYCRFDPDHPLRAHTLRD
CEEEECCCCCHHHHHHHHHHHHHHEEEECCCCEEECCCCCHHHHHCCCCCCCCHHHHHHH
TADALKGCRAVVCSMIGEAPKAELERLGVEPYVVEGEIEPILRDLAKAL
HHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEECCCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2450865 [H]