| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118303
Identifier: 197118303
GI number: 197118303
Start: 2219279
End: 2219794
Strand: Direct
Name: 197118303
Synonym: Gbem_1920
Alternate gene names: NA
Gene position: 2219279-2219794 (Clockwise)
Preceding gene: 197118302
Following gene: 197118304
Centisome position: 48.09
GC content: 54.65
Gene sequence:
>516_bases ATGCCAAATTTTTTCTGCAGCGTTACTTTGACGTTTATCCTCACCATCGTCACCGGTTGCGCCATCGGTGTTCCGCAAAA CCGGGGCGAATTTGTGGACATGTATAAAGATGCCCACGTGTTCGGCAAGGCGGAGCATGTCACGATCAACCGCCCGGCTA AAGCGGTCGCAGCCGATATTAAGGCATTTTCCCAGAACTGCCTCAACATACGCGTCGTAAATCCACCGAACTACGCTCTA AAGGAGGCAGGAGGCTCGACGACCTTCCGTACAAAAATTGAGAAAGTCGGTAACAATCAGACGACCCTTTCGCTGCAGGA AGAGTACAATGACCGGCCTATGTCCGGAGCGCCACAGGACGGGCTATATACGCTGGTGGCGGAAATTCGCGCGGCAGGCA AAACCAAAACCGAACTCGACATATACCATGCGAGGCGCGGCAAGATCGCCGACCCGCTGAAACAATGGGCCGCCGGCGAC AAATGCGCCTGTCCTTCCCTCGACAGAGGGTGGTAA
Upstream 100 bases:
>100_bases AGCAGCCGGGAATAAGCCGAGCCGCTCCGGGGGCTGCACCTCAGCAAGAAACGTCAGGTTATCTCCGACACAGTTCGCAT CAAAAACAGGAGGCTTCTTA
Downstream 100 bases:
>100_bases AGGTCTGCCAATACGCGGCGCGGAACTGCACCCGGTCGGAGGATGGAAGGAACTACATATGCACGTGAAAATCTACGCCG CTTTACTGGTATCTGTTTTA
Product: lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 171; Mature: 170
Protein sequence:
>171_residues MPNFFCSVTLTFILTIVTGCAIGVPQNRGEFVDMYKDAHVFGKAEHVTINRPAKAVAADIKAFSQNCLNIRVVNPPNYAL KEAGGSTTFRTKIEKVGNNQTTLSLQEEYNDRPMSGAPQDGLYTLVAEIRAAGKTKTELDIYHARRGKIADPLKQWAAGD KCACPSLDRGW
Sequences:
>Translated_171_residues MPNFFCSVTLTFILTIVTGCAIGVPQNRGEFVDMYKDAHVFGKAEHVTINRPAKAVAADIKAFSQNCLNIRVVNPPNYAL KEAGGSTTFRTKIEKVGNNQTTLSLQEEYNDRPMSGAPQDGLYTLVAEIRAAGKTKTELDIYHARRGKIADPLKQWAAGD KCACPSLDRGW >Mature_170_residues PNFFCSVTLTFILTIVTGCAIGVPQNRGEFVDMYKDAHVFGKAEHVTINRPAKAVAADIKAFSQNCLNIRVVNPPNYALK EAGGSTTFRTKIEKVGNNQTTLSLQEEYNDRPMSGAPQDGLYTLVAEIRAAGKTKTELDIYHARRGKIADPLKQWAAGDK CACPSLDRGW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18750; Mature: 18618
Theoretical pI: Translated: 8.73; Mature: 8.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNFFCSVTLTFILTIVTGCAIGVPQNRGEFVDMYKDAHVFGKAEHVTINRPAKAVAADI CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHH KAFSQNCLNIRVVNPPNYALKEAGGSTTFRTKIEKVGNNQTTLSLQEEYNDRPMSGAPQD HHHHCCCCEEEEECCCCHHHHHCCCCCHHHHHHHHCCCCCEEEEEHHHCCCCCCCCCCCC GLYTLVAEIRAAGKTKTELDIYHARRGKIADPLKQWAAGDKCACPSLDRGW HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure PNFFCSVTLTFILTIVTGCAIGVPQNRGEFVDMYKDAHVFGKAEHVTINRPAKAVAADI CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHH KAFSQNCLNIRVVNPPNYALKEAGGSTTFRTKIEKVGNNQTTLSLQEEYNDRPMSGAPQD HHHHCCCCEEEEECCCCHHHHHCCCCCHHHHHHHHCCCCCEEEEEHHHCCCCCCCCCCCC GLYTLVAEIRAAGKTKTELDIYHARRGKIADPLKQWAAGDKCACPSLDRGW HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA