| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is recG [H]
Identifier: 197118286
GI number: 197118286
Start: 2204354
End: 2206672
Strand: Direct
Name: recG [H]
Synonym: Gbem_1903
Alternate gene names: 197118286
Gene position: 2204354-2206672 (Clockwise)
Preceding gene: 197118285
Following gene: 197118291
Centisome position: 47.76
GC content: 64.08
Gene sequence:
>2319_bases ATGCCGACGATAACCCTCGCGCCAGACGGGTCCATCCCGCTTCCGGAACAGCTCAGGAATGATCTGAAGCTTCGCCCGGG GGACCTGGTGAGCGTAGAGGTCGTCGATGGGACCCTACGTATCTCCAAGCAAAAATCAGCCAAAGAAACACGCTCTACCC CCCCCGCAGCAAAGCCCGCAGCCGCCGTCGCGCAGGTAACCGTCCCCGAAGAACTGAAGACCCCGATGCAGAGCATCAAG GGGGTAGGGCCGAAGCTTGCCGCCACCCTTTCCAAAAAGGGGCTGGACACGGTCGAGGATGCGCTTTATCTTCTCCCCAA CCGCTACGAGGATCGCCGCGAACTAAAGAAGATAGCGCAACTGCGCCCCGGCAACAGCGAGGCCTTCTTCGCCACCGTCG TTTCGGCCGCGGCGCAAACCACCAAGGGGGGACGGCGCTACTTCGAGGCCATCGTCAAGGACGAAACGGGTAGCCTGCCG CTCAAGTGGTTCCATTTCCACCCGAACTTCCTGAAGAAACAGCTGGTTCCCGGTAGGCAGGGGATCTTCATCGGCGACGT CGCCCAGTTCGGCTTCCAGCGCGAGATGCACCATCCCGAGGTCGAGTGGGCCGCGGAGGGTGAGGACCTCTCCCAGGTGA TGGCGCGCGACCCCGACAACTTCGGCAGCATACTTCCGGTCTATCCGCTCACCGAGGGGGTGAGCCAGAAGGTGATGCGC CGCATCATGCGCGACGCCGTGCAGCGTTACAGCCGCTACGTGAAGGGGGCGCTTCCCGACGAGCTTCTGCAGCGCCACAA GCTCCTCACGCTTCCCGTGGCGCTACGCGAGGCGCACCTTCCTGCCCAGGACAGCGACCTTTCCGCGCTCAACAGCGGCC GCAGCTCGGCACACCGCTCACTCGCTTTCGACGAGCTCTTCTTCCTGCAGTTGGGGCTCGCCCTTAAAAGGCGCGGCATC GCGGTAGAGGACGGCATCAGCTTCAAGGTGACCCACCGCTACACCAAGGAACTCCTAAAGCTCCTCCCCTTCAGCCTGAC CGCTGCTCAGAAACGGGTACTCTCCGAGATAAAGGAAGACATGATGTCGCCCCACCCGATGCACAGGCTGGTGCAGGGGG ATGTGGGCTGCGGCAAGACGCTCGTCGCCCTCATGGCCGCGCTCGTCTGCGTGGAAAACGATTACCAGGTCGCCATCATG GCCCCCACCGAGCTTCTAGCCGAACAGCACTACCTGAACATCCATGGCTACTGCGAGAAACTGGGCATAGGCGTGACGCT CCTGACTGCGAGCGTGAAGGGGAAGGGTGACACGCTGGAAAAAATTGCCTCCGGCGCCACCCAGATCGTGGTCGGGACTC ACGCCGTCATCCAGGAGAAGGTGGAATTCCACCGATTGGGGCTGGGAATCATCGACGAGCAGCACCGCTTCGGCGTCGTG CAGCGCGCCCAGTTGAAGAAGAAGGGGGCGAACCCCGACATCCTGGTGATGACGGCGACTCCCATTCCGCGCACTCTTTC CATGACCGTCTTCGGAGACCTCTCGCTTTCGGTGATCGACGAGTTGCCGCCGGGGAGGACCCCCATCGAGACGCGGATGG TGCGCGAGTCGCGCCGCAAGGAGGTGTACGCGCTGGTGAGGGAGGAGGCGGCGAAGGGGAGGCAGGCCTACGTCATCTAT CCCCTGGTCGAGGAGACCGAGAAGAGCGACCTGAAGGCTGCAGTGCAAATGGCCGAGCACCTGGCGCAGGATGTTTTTCC GGACCTGCGCGTCGCCGTCCTCCACGGGCGCATGCCCGCCGCCGAGAAGGAAGCGGTGATGAAGGAGTTCAAGGCGGGGA CTACCGACATCCTGGTCGCCACCACGGTCATCGAGGTCGGCATCGACGTCCCCAACGCCACCGTAATGGTCATCGAACAC GCCGAGCGGTTCGGTCTTTCCCAACTGCACCAGTTGCGGGGGAGGGTGGGGCGCGGCAGCGAGCGCTCCCGCTGCATCCT GCTCGCCGGGGACAAGCTCTCCGAGGACGGCCAGAAACGTCTTGAGGTAATGGTGCAGAGCTCCGACGGCTTCGTCATCG CCGAGGCCGACCTTCAGATCAGGGGACCCGGCGACTTCCTGGGCACCAGGCAGGCGGGGCTTCCCGAATTGCGGGTGGCG GACATCCTGCGGGACGGCGGCGTGCTGGAGCAGGCGCGCAAAGACGCCTTCGCCCTGGTCGAGCGCGACCCGGAGCTGTC CGCGCCCGGACACGAACGTCTGCGCGGGGAAATGATGCTCCGCTGGGGCGGGAGGTTGGAGCTCGCCAGCATCGGGTGA
Upstream 100 bases:
>100_bases CAGCGTGGACGAGATCGTCGCCGACATCAACAAGCTTTTCTAGCAGTTTCCGCTGCCTGGCGCGGTTTTCCCGCGCCAGG CGCTCTTACCCTCTCTCCCC
Downstream 100 bases:
>100_bases CTCGCTGAATTCGGTCGAGTCCTGTAACACTAGGTCGATTTTCCGAACAACTCGGTCAAGTCCTCGAACAACCTGATCAA GTCCTCGAACAACTTAGGCA
Product: ATP-dependent DNA helicase RecG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 772; Mature: 771
Protein sequence:
>772_residues MPTITLAPDGSIPLPEQLRNDLKLRPGDLVSVEVVDGTLRISKQKSAKETRSTPPAAKPAAAVAQVTVPEELKTPMQSIK GVGPKLAATLSKKGLDTVEDALYLLPNRYEDRRELKKIAQLRPGNSEAFFATVVSAAAQTTKGGRRYFEAIVKDETGSLP LKWFHFHPNFLKKQLVPGRQGIFIGDVAQFGFQREMHHPEVEWAAEGEDLSQVMARDPDNFGSILPVYPLTEGVSQKVMR RIMRDAVQRYSRYVKGALPDELLQRHKLLTLPVALREAHLPAQDSDLSALNSGRSSAHRSLAFDELFFLQLGLALKRRGI AVEDGISFKVTHRYTKELLKLLPFSLTAAQKRVLSEIKEDMMSPHPMHRLVQGDVGCGKTLVALMAALVCVENDYQVAIM APTELLAEQHYLNIHGYCEKLGIGVTLLTASVKGKGDTLEKIASGATQIVVGTHAVIQEKVEFHRLGLGIIDEQHRFGVV QRAQLKKKGANPDILVMTATPIPRTLSMTVFGDLSLSVIDELPPGRTPIETRMVRESRRKEVYALVREEAAKGRQAYVIY PLVEETEKSDLKAAVQMAEHLAQDVFPDLRVAVLHGRMPAAEKEAVMKEFKAGTTDILVATTVIEVGIDVPNATVMVIEH AERFGLSQLHQLRGRVGRGSERSRCILLAGDKLSEDGQKRLEVMVQSSDGFVIAEADLQIRGPGDFLGTRQAGLPELRVA DILRDGGVLEQARKDAFALVERDPELSAPGHERLRGEMMLRWGGRLELASIG
Sequences:
>Translated_772_residues MPTITLAPDGSIPLPEQLRNDLKLRPGDLVSVEVVDGTLRISKQKSAKETRSTPPAAKPAAAVAQVTVPEELKTPMQSIK GVGPKLAATLSKKGLDTVEDALYLLPNRYEDRRELKKIAQLRPGNSEAFFATVVSAAAQTTKGGRRYFEAIVKDETGSLP LKWFHFHPNFLKKQLVPGRQGIFIGDVAQFGFQREMHHPEVEWAAEGEDLSQVMARDPDNFGSILPVYPLTEGVSQKVMR RIMRDAVQRYSRYVKGALPDELLQRHKLLTLPVALREAHLPAQDSDLSALNSGRSSAHRSLAFDELFFLQLGLALKRRGI AVEDGISFKVTHRYTKELLKLLPFSLTAAQKRVLSEIKEDMMSPHPMHRLVQGDVGCGKTLVALMAALVCVENDYQVAIM APTELLAEQHYLNIHGYCEKLGIGVTLLTASVKGKGDTLEKIASGATQIVVGTHAVIQEKVEFHRLGLGIIDEQHRFGVV QRAQLKKKGANPDILVMTATPIPRTLSMTVFGDLSLSVIDELPPGRTPIETRMVRESRRKEVYALVREEAAKGRQAYVIY PLVEETEKSDLKAAVQMAEHLAQDVFPDLRVAVLHGRMPAAEKEAVMKEFKAGTTDILVATTVIEVGIDVPNATVMVIEH AERFGLSQLHQLRGRVGRGSERSRCILLAGDKLSEDGQKRLEVMVQSSDGFVIAEADLQIRGPGDFLGTRQAGLPELRVA DILRDGGVLEQARKDAFALVERDPELSAPGHERLRGEMMLRWGGRLELASIG >Mature_771_residues PTITLAPDGSIPLPEQLRNDLKLRPGDLVSVEVVDGTLRISKQKSAKETRSTPPAAKPAAAVAQVTVPEELKTPMQSIKG VGPKLAATLSKKGLDTVEDALYLLPNRYEDRRELKKIAQLRPGNSEAFFATVVSAAAQTTKGGRRYFEAIVKDETGSLPL KWFHFHPNFLKKQLVPGRQGIFIGDVAQFGFQREMHHPEVEWAAEGEDLSQVMARDPDNFGSILPVYPLTEGVSQKVMRR IMRDAVQRYSRYVKGALPDELLQRHKLLTLPVALREAHLPAQDSDLSALNSGRSSAHRSLAFDELFFLQLGLALKRRGIA VEDGISFKVTHRYTKELLKLLPFSLTAAQKRVLSEIKEDMMSPHPMHRLVQGDVGCGKTLVALMAALVCVENDYQVAIMA PTELLAEQHYLNIHGYCEKLGIGVTLLTASVKGKGDTLEKIASGATQIVVGTHAVIQEKVEFHRLGLGIIDEQHRFGVVQ RAQLKKKGANPDILVMTATPIPRTLSMTVFGDLSLSVIDELPPGRTPIETRMVRESRRKEVYALVREEAAKGRQAYVIYP LVEETEKSDLKAAVQMAEHLAQDVFPDLRVAVLHGRMPAAEKEAVMKEFKAGTTDILVATTVIEVGIDVPNATVMVIEHA ERFGLSQLHQLRGRVGRGSERSRCILLAGDKLSEDGQKRLEVMVQSSDGFVIAEADLQIRGPGDFLGTRQAGLPELRVAD ILRDGGVLEQARKDAFALVERDPELSAPGHERLRGEMMLRWGGRLELASIG
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG1200
COG function: function code LK; RecG-like helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367254, Length=681, Percent_Identity=45.8149779735683, Blast_Score=506, Evalue=1e-144, Organism=Escherichia coli, GI1787357, Length=400, Percent_Identity=41, Blast_Score=281, Evalue=7e-77,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR004609 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C; PF01336 tRNA_anti [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 85080; Mature: 84948
Theoretical pI: Translated: 8.55; Mature: 8.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTITLAPDGSIPLPEQLRNDLKLRPGDLVSVEVVDGTLRISKQKSAKETRSTPPAAKPA CCEEEECCCCCCCCHHHHHHCCCCCCCCEEEEEEECCEEEECCHHHHHHHCCCCCCCCCH AAVAQVTVPEELKTPMQSIKGVGPKLAATLSKKGLDTVEDALYLLPNRYEDRRELKKIAQ HHHEEEECCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHH LRPGNSEAFFATVVSAAAQTTKGGRRYFEAIVKDETGSLPLKWFHFHPNFLKKQLVPGRQ CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHCCCCCC GIFIGDVAQFGFQREMHHPEVEWAAEGEDLSQVMARDPDNFGSILPVYPLTEGVSQKVMR CEEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHH RIMRDAVQRYSRYVKGALPDELLQRHKLLTLPVALREAHLPAQDSDLSALNSGRSSAHRS HHHHHHHHHHHHHHCCCCCHHHHHHCCEEEHHHHHHHHCCCCCCCCHHHHHCCHHHHHHH LAFDELFFLQLGLALKRRGIAVEDGISFKVTHRYTKELLKLLPFSLTAAQKRVLSEIKED HHHHHHHHHHHHHHHHHCCCEEECCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHH MMSPHPMHRLVQGDVGCGKTLVALMAALVCVENDYQVAIMAPTELLAEQHYLNIHGYCEK HCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHEEEHHHHHHH LGIGVTLLTASVKGKGDTLEKIASGATQIVVGTHAVIQEKVEFHRLGLGIIDEQHRFGVV HCCCEEEEEEECCCCCHHHHHHHCCCEEEEECHHHHHHHHHHHHHHCCCEECCHHHHHHH QRAQLKKKGANPDILVMTATPIPRTLSMTVFGDLSLSVIDELPPGRTPIETRMVRESRRK HHHHHHHCCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHHH EVYALVREEAAKGRQAYVIYPLVEETEKSDLKAAVQMAEHLAQDVFPDLRVAVLHGRMPA HHHHHHHHHHHCCCEEEEEEEEHHCCCHHHHHHHHHHHHHHHHHCCCHHEEHHHCCCCCC AEKEAVMKEFKAGTTDILVATTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRGRVGRGS HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEECHHHCCHHHHHHHHHCCCCCC ERSRCILLAGDKLSEDGQKRLEVMVQSSDGFVIAEADLQIRGPGDFLGTRQAGLPELRVA CCCEEEEEECCCCCCCHHHHHHEEEECCCCEEEEECCEEEECCCCCCCCCCCCCCCHHHH DILRDGGVLEQARKDAFALVERDPELSAPGHERLRGEMMLRWGGRLELASIG HHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHEEECCEEEEECCC >Mature Secondary Structure PTITLAPDGSIPLPEQLRNDLKLRPGDLVSVEVVDGTLRISKQKSAKETRSTPPAAKPA CEEEECCCCCCCCHHHHHHCCCCCCCCEEEEEEECCEEEECCHHHHHHHCCCCCCCCCH AAVAQVTVPEELKTPMQSIKGVGPKLAATLSKKGLDTVEDALYLLPNRYEDRRELKKIAQ HHHEEEECCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHH LRPGNSEAFFATVVSAAAQTTKGGRRYFEAIVKDETGSLPLKWFHFHPNFLKKQLVPGRQ CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHCCCCCC GIFIGDVAQFGFQREMHHPEVEWAAEGEDLSQVMARDPDNFGSILPVYPLTEGVSQKVMR CEEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHH RIMRDAVQRYSRYVKGALPDELLQRHKLLTLPVALREAHLPAQDSDLSALNSGRSSAHRS HHHHHHHHHHHHHHCCCCCHHHHHHCCEEEHHHHHHHHCCCCCCCCHHHHHCCHHHHHHH LAFDELFFLQLGLALKRRGIAVEDGISFKVTHRYTKELLKLLPFSLTAAQKRVLSEIKED HHHHHHHHHHHHHHHHHCCCEEECCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHH MMSPHPMHRLVQGDVGCGKTLVALMAALVCVENDYQVAIMAPTELLAEQHYLNIHGYCEK HCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHEEEHHHHHHH LGIGVTLLTASVKGKGDTLEKIASGATQIVVGTHAVIQEKVEFHRLGLGIIDEQHRFGVV HCCCEEEEEEECCCCCHHHHHHHCCCEEEEECHHHHHHHHHHHHHHCCCEECCHHHHHHH QRAQLKKKGANPDILVMTATPIPRTLSMTVFGDLSLSVIDELPPGRTPIETRMVRESRRK HHHHHHHCCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHHH EVYALVREEAAKGRQAYVIYPLVEETEKSDLKAAVQMAEHLAQDVFPDLRVAVLHGRMPA HHHHHHHHHHHCCCEEEEEEEEHHCCCHHHHHHHHHHHHHHHHHCCCHHEEHHHCCCCCC AEKEAVMKEFKAGTTDILVATTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRGRVGRGS HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEECHHHCCHHHHHHHHHCCCCCC ERSRCILLAGDKLSEDGQKRLEVMVQSSDGFVIAEADLQIRGPGDFLGTRQAGLPELRVA CCCEEEEEECCCCCCCHHHHHHEEEECCCCEEEEECCEEEECCCCCCCCCCCCCCCHHHH DILRDGGVLEQARKDAFALVERDPELSAPGHERLRGEMMLRWGGRLELASIG HHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHEEECCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]