| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118214
Identifier: 197118214
GI number: 197118214
Start: 2125838
End: 2127346
Strand: Reverse
Name: 197118214
Synonym: Gbem_1830
Alternate gene names: NA
Gene position: 2127346-2125838 (Counterclockwise)
Preceding gene: 197118215
Following gene: 197118210
Centisome position: 46.09
GC content: 56.26
Gene sequence:
>1509_bases ATGAAGATTGGTCTCGGTAAGACGGAAAGGATTTGCCCTACACGTGCTGCAGGTAAGGACGGTCGTCGCGCCTCGGCGTT AAATGGCCGTCATTCTACACGGCAGATATTCGGGCCTTTGGCGTTTTCGGTCTGCCTCCATCTGATGATAATCGCAGCAG TGGCGGCGGAATGGCAGGCCAGGACCGAGGTGGTATGGGTTTGCACGCTTTTTGCCCCAGAGCCGGCGCCGGTCGATCCT GCGCCGCCGGAGCCTGCCGACCTGAAGGGTTCCACCAATTCTGGCAACGGGGAGGTAACGAAAAAGGTGGCGCCAAAGAA AGACCAACCCGACCAACTGGAGCAACCGGAACCGATGCCAATGGAGCCTGCTGCAACCCAGCTGGTCCAGCTAGGAGCAG CCAAGCCTGCAAACATTTCGTCCTCTCCGGTTATCCTACAGGAGCCTGCTGCCATTTCCGGTGCCGTACTCGCCCTCCCG ATGATGCAATTTTCCTCTGCGCGGGTGCCTGAGCAGAGCCGACTGCCGAGAAGAGTAGCCGAAGCGCCGGTGCCGCCCGG CTCGACGCCTGTCCTGCCATTGCAACAGTTCCGCCGCGATGGTGAACCGTCTTCGATGAGGGGGGATCGTCCTCACCTTT CATCGGTGCAAACGGTGGCAAAATCACTCGAGACCGAGGCGGTCGTACCGAGCCAGGGAGCGGCCCGGGACTTTGATGAT GCGGGCTATCCTCATCCTGAGCCCTTTTTACCTATGCCGAGCGGAGCCGCTACCAGCGGTGCTTCAGTCATCAAGGGCGA CTCGAACCGTCCTCCCGGTAATCTGCAGTCGTCTTCAGCGGGTTTGCTGTCCACGGTGTCGCCAGATGGGCAGAAGCGGC GCCAAGTTACCGCAGCCGCAGTAACGCAGCCCCTTACTGCTCGGCAGACAGTTGCTGGTCCCCCCTCAACTGCATCAGAA CCGATAAAACCGGAGATCGAAAAAACGGAAAACCCAACCGCGGAGATGCTACGACAAGCGCCTCCGATCTTCGAGGCGCG CTTAAAGGGTGATTTGGAATTATACGTAACCGGCAGTGACGTAGCTGCCAACCGGACCAAGGTCATGGTGCACTTCCGAC CATACCCGAAGCGTCGCCACCACATCCCCATCAGCATGAGGGAAAGCAGAAAAATTAAGTCCATCATCCCGAAAATATCA TTTACAGGCAAGGACACAATCCAGGCAGTCATAGAAGTTGCGTCTGACGGTATATATGAATTTCGCGGCTCAGAGGATAC CGGTCCACAGGAAGCCAGATGCACCCTGACAATTCACGGCACGAGCAGCAGGCCGATTATCAAAGAAGTAGGGACCAGAA AAGTGGGCAAAGACAGTTATATTCTCAAAGTAATGATGCCGGAAGGAGTGCTCTGGGATGATGACACCAGTTTCAGCGGC ACTATTAAGGATTCAGACGGGATCACAAAGTTCAATTCAGAAACGGGGTTGGTTTGGAAAGAATATTGA
Upstream 100 bases:
>100_bases TAAAAATGTTGTTCCCGCTTACCTTTTGCGTGTTCCCCGCCTTCATGGTGGTCCTGCTGGTACCGGCTTTTTTCAGAATA TTCCAAATGTTTAAACATTG
Downstream 100 bases:
>100_bases AATATACGCAGACACCGGTGGCGCTCGCCATGGCGGGCGGTACTGCACGCCTGGAACCCGCTTCCGGTGCTGGAGATCGC GGCGGGCATGCAGTGAGGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 502; Mature: 502
Protein sequence:
>502_residues MKIGLGKTERICPTRAAGKDGRRASALNGRHSTRQIFGPLAFSVCLHLMIIAAVAAEWQARTEVVWVCTLFAPEPAPVDP APPEPADLKGSTNSGNGEVTKKVAPKKDQPDQLEQPEPMPMEPAATQLVQLGAAKPANISSSPVILQEPAAISGAVLALP MMQFSSARVPEQSRLPRRVAEAPVPPGSTPVLPLQQFRRDGEPSSMRGDRPHLSSVQTVAKSLETEAVVPSQGAARDFDD AGYPHPEPFLPMPSGAATSGASVIKGDSNRPPGNLQSSSAGLLSTVSPDGQKRRQVTAAAVTQPLTARQTVAGPPSTASE PIKPEIEKTENPTAEMLRQAPPIFEARLKGDLELYVTGSDVAANRTKVMVHFRPYPKRRHHIPISMRESRKIKSIIPKIS FTGKDTIQAVIEVASDGIYEFRGSEDTGPQEARCTLTIHGTSSRPIIKEVGTRKVGKDSYILKVMMPEGVLWDDDTSFSG TIKDSDGITKFNSETGLVWKEY
Sequences:
>Translated_502_residues MKIGLGKTERICPTRAAGKDGRRASALNGRHSTRQIFGPLAFSVCLHLMIIAAVAAEWQARTEVVWVCTLFAPEPAPVDP APPEPADLKGSTNSGNGEVTKKVAPKKDQPDQLEQPEPMPMEPAATQLVQLGAAKPANISSSPVILQEPAAISGAVLALP MMQFSSARVPEQSRLPRRVAEAPVPPGSTPVLPLQQFRRDGEPSSMRGDRPHLSSVQTVAKSLETEAVVPSQGAARDFDD AGYPHPEPFLPMPSGAATSGASVIKGDSNRPPGNLQSSSAGLLSTVSPDGQKRRQVTAAAVTQPLTARQTVAGPPSTASE PIKPEIEKTENPTAEMLRQAPPIFEARLKGDLELYVTGSDVAANRTKVMVHFRPYPKRRHHIPISMRESRKIKSIIPKIS FTGKDTIQAVIEVASDGIYEFRGSEDTGPQEARCTLTIHGTSSRPIIKEVGTRKVGKDSYILKVMMPEGVLWDDDTSFSG TIKDSDGITKFNSETGLVWKEY >Mature_502_residues MKIGLGKTERICPTRAAGKDGRRASALNGRHSTRQIFGPLAFSVCLHLMIIAAVAAEWQARTEVVWVCTLFAPEPAPVDP APPEPADLKGSTNSGNGEVTKKVAPKKDQPDQLEQPEPMPMEPAATQLVQLGAAKPANISSSPVILQEPAAISGAVLALP MMQFSSARVPEQSRLPRRVAEAPVPPGSTPVLPLQQFRRDGEPSSMRGDRPHLSSVQTVAKSLETEAVVPSQGAARDFDD AGYPHPEPFLPMPSGAATSGASVIKGDSNRPPGNLQSSSAGLLSTVSPDGQKRRQVTAAAVTQPLTARQTVAGPPSTASE PIKPEIEKTENPTAEMLRQAPPIFEARLKGDLELYVTGSDVAANRTKVMVHFRPYPKRRHHIPISMRESRKIKSIIPKIS FTGKDTIQAVIEVASDGIYEFRGSEDTGPQEARCTLTIHGTSSRPIIKEVGTRKVGKDSYILKVMMPEGVLWDDDTSFSG TIKDSDGITKFNSETGLVWKEY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53941; Mature: 53941
Theoretical pI: Translated: 9.09; Mature: 9.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIGLGKTERICPTRAAGKDGRRASALNGRHSTRQIFGPLAFSVCLHLMIIAAVAAEWQA CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC RTEVVWVCTLFAPEPAPVDPAPPEPADLKGSTNSGNGEVTKKVAPKKDQPDQLEQPEPMP CCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHCCCCCCCC MEPAATQLVQLGAAKPANISSSPVILQEPAAISGAVLALPMMQFSSARVPEQSRLPRRVA CCHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHCCHHHH EAPVPPGSTPVLPLQQFRRDGEPSSMRGDRPHLSSVQTVAKSLETEAVVPSQGAARDFDD HCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC AGYPHPEPFLPMPSGAATSGASVIKGDSNRPPGNLQSSSAGLLSTVSPDGQKRRQVTAAA CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHH VTQPLTARQTVAGPPSTASEPIKPEIEKTENPTAEMLRQAPPIFEARLKGDLELYVTGSD HHCCCHHHHHCCCCCCCCCCCCCCCHHCCCCCHHHHHHHCCCHHHHHCCCCEEEEEECCC VAANRTKVMVHFRPYPKRRHHIPISMRESRKIKSIIPKISFTGKDTIQAVIEVASDGIYE CCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEE FRGSEDTGPQEARCTLTIHGTSSRPIIKEVGTRKVGKDSYILKVMMPEGVLWDDDTSFSG ECCCCCCCCCCCEEEEEEECCCCCCHHHHHCCCCCCCCCEEEEEECCCCEEECCCCCCCE TIKDSDGITKFNSETGLVWKEY EEECCCCCEEECCCCCCEEECC >Mature Secondary Structure MKIGLGKTERICPTRAAGKDGRRASALNGRHSTRQIFGPLAFSVCLHLMIIAAVAAEWQA CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC RTEVVWVCTLFAPEPAPVDPAPPEPADLKGSTNSGNGEVTKKVAPKKDQPDQLEQPEPMP CCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHCCCCCCCC MEPAATQLVQLGAAKPANISSSPVILQEPAAISGAVLALPMMQFSSARVPEQSRLPRRVA CCHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHCCHHHH EAPVPPGSTPVLPLQQFRRDGEPSSMRGDRPHLSSVQTVAKSLETEAVVPSQGAARDFDD HCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC AGYPHPEPFLPMPSGAATSGASVIKGDSNRPPGNLQSSSAGLLSTVSPDGQKRRQVTAAA CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHH VTQPLTARQTVAGPPSTASEPIKPEIEKTENPTAEMLRQAPPIFEARLKGDLELYVTGSD HHCCCHHHHHCCCCCCCCCCCCCCCHHCCCCCHHHHHHHCCCHHHHHCCCCEEEEEECCC VAANRTKVMVHFRPYPKRRHHIPISMRESRKIKSIIPKISFTGKDTIQAVIEVASDGIYE CCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEE FRGSEDTGPQEARCTLTIHGTSSRPIIKEVGTRKVGKDSYILKVMMPEGVLWDDDTSFSG ECCCCCCCCCCCEEEEEEECCCCCCHHHHHCCCCCCCCCEEEEEECCCCEEECCCCCCCE TIKDSDGITKFNSETGLVWKEY EEECCCCCEEECCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA