| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118074
Identifier: 197118074
GI number: 197118074
Start: 1953319
End: 1954425
Strand: Direct
Name: 197118074
Synonym: Gbem_1688
Alternate gene names: NA
Gene position: 1953319-1954425 (Clockwise)
Preceding gene: 197118073
Following gene: 197118075
Centisome position: 42.32
GC content: 64.05
Gene sequence:
>1107_bases ATGCGTGTCGTCATGTTTTATCACTCCCTGGTCTCGGACTGGAACCACGGCAACGCCCACTTCCTGCGCGGGGTTGCGAC CGAATTGGGCCAGAGGGGGCACGAGGTCCGCGTCTACGAACCCAGGAACGGTTGGAGCTACAGCAACCTTTTGCGCGAAA AAGGGGTGAACGCCCTGCGGCGCTTCGAGGAGGTGTATCCCGGCCTTTCGGGGATTCCTTACGAGCTCGATAAGCTTGAC CTCCATAAGGCGCTTGCCGGGGCAGATCTCGTCATCGTGCACGAATGGAACGAGCACGAGCTGGTGCACAGGATCGGAGA GCACCGCAAAAAAAACGGTAATTACCGCCTGCTCTTTCACGATACCCATCACCGCTCGGTCACCGACGCCGGCGCCATGG ACGCCTACGACCTCTCCGGCTTCGACGGCGTTTTGGCCTACGGCGGCAGGATCAGGGAGATCTACCTGCAAAAGGGGTGG GCGGAACGGGTCTGGATCTGGCACGAGGCCGCCGACGTCCGGGTCTTTCGACCAGTCGAGGGAGCGCAGAAGGCGGGGGA CGTGGTCTGGATCGGCAACTGGGAGGACGACGAGAGGAGCGAAGAAATCCGCGAGTTCTTCGTGGAACCGGTGCGGCGGC TGGGGCTGAAAGCGGCGGTATACGGGGTCCGCTACCCGAAGCCCGCGCTGAAACTTTTGCAGGAAGCGGGGATCGGCTAC GGCGGCTGGCTCCCCAACTTCGAAGTGCCGAGGGTCTTCAGCAGCTTCCGGCTCACCGTCCACATCCCGCGTCGACCCTA CGTCACGGCGCTTCCGGGGATCCCGACTATCCGCCCCTTCGAGGCGCTGGCCTGCGGCATCCCGCTCATTTCGGCCCCAT GGGACGACTGCGACGCGCTCTTTTCCCCCGACCGCGATTTCGTCTACGCCGGCAGCGGCGAGGAGATGCAGCGGCAGATG TGCGCCTTGCTGGACGATACCGCCCGCGCCGGCAGGTTGGCCTGCCACGGCCGCGGCACCATCCTGGCGCGGCACACCTG CGGCCACCGCATAGACGAGCTTTTGCAGATCTGCAGGGAGCTGGGGCTTCCCGCAGATGAATCATGA
Upstream 100 bases:
>100_bases GGCGGGTTACCTGTCGCTGTACCGCCAGTTGTGCCGGGTAAGCTGACCTTCCCCCGCCCCGACCCTTGCTGGGGGAGGGG GACAACCAGAGGATTGCCCG
Downstream 100 bases:
>100_bases ACTAGAAAAGGAATGACAATGGGCGCACCACTATCCATCGCCTTCTTCGCATCGAGTCTTGTTTCCGCCTACTGGAACGG CGCCGCCACCTATTACCGCG
Product: glycosyltransferase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 368; Mature: 368
Protein sequence:
>368_residues MRVVMFYHSLVSDWNHGNAHFLRGVATELGQRGHEVRVYEPRNGWSYSNLLREKGVNALRRFEEVYPGLSGIPYELDKLD LHKALAGADLVIVHEWNEHELVHRIGEHRKKNGNYRLLFHDTHHRSVTDAGAMDAYDLSGFDGVLAYGGRIREIYLQKGW AERVWIWHEAADVRVFRPVEGAQKAGDVVWIGNWEDDERSEEIREFFVEPVRRLGLKAAVYGVRYPKPALKLLQEAGIGY GGWLPNFEVPRVFSSFRLTVHIPRRPYVTALPGIPTIRPFEALACGIPLISAPWDDCDALFSPDRDFVYAGSGEEMQRQM CALLDDTARAGRLACHGRGTILARHTCGHRIDELLQICRELGLPADES
Sequences:
>Translated_368_residues MRVVMFYHSLVSDWNHGNAHFLRGVATELGQRGHEVRVYEPRNGWSYSNLLREKGVNALRRFEEVYPGLSGIPYELDKLD LHKALAGADLVIVHEWNEHELVHRIGEHRKKNGNYRLLFHDTHHRSVTDAGAMDAYDLSGFDGVLAYGGRIREIYLQKGW AERVWIWHEAADVRVFRPVEGAQKAGDVVWIGNWEDDERSEEIREFFVEPVRRLGLKAAVYGVRYPKPALKLLQEAGIGY GGWLPNFEVPRVFSSFRLTVHIPRRPYVTALPGIPTIRPFEALACGIPLISAPWDDCDALFSPDRDFVYAGSGEEMQRQM CALLDDTARAGRLACHGRGTILARHTCGHRIDELLQICRELGLPADES >Mature_368_residues MRVVMFYHSLVSDWNHGNAHFLRGVATELGQRGHEVRVYEPRNGWSYSNLLREKGVNALRRFEEVYPGLSGIPYELDKLD LHKALAGADLVIVHEWNEHELVHRIGEHRKKNGNYRLLFHDTHHRSVTDAGAMDAYDLSGFDGVLAYGGRIREIYLQKGW AERVWIWHEAADVRVFRPVEGAQKAGDVVWIGNWEDDERSEEIREFFVEPVRRLGLKAAVYGVRYPKPALKLLQEAGIGY GGWLPNFEVPRVFSSFRLTVHIPRRPYVTALPGIPTIRPFEALACGIPLISAPWDDCDALFSPDRDFVYAGSGEEMQRQM CALLDDTARAGRLACHGRGTILARHTCGHRIDELLQICRELGLPADES
Specific function: Unknown
COG id: COG4641
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41858; Mature: 41858
Theoretical pI: Translated: 6.76; Mature: 6.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVVMFYHSLVSDWNHGNAHFLRGVATELGQRGHEVRVYEPRNGWSYSNLLREKGVNALR CEEEEEEHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH RFEEVYPGLSGIPYELDKLDLHKALAGADLVIVHEWNEHELVHRIGEHRKKNGNYRLLFH HHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEEEE DTHHRSVTDAGAMDAYDLSGFDGVLAYGGRIREIYLQKGWAERVWIWHEAADVRVFRPVE CCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEEEEEECCCCCCEEEEEEECCCEEEECCCC GAQKAGDVVWIGNWEDDERSEEIREFFVEPVRRLGLKAAVYGVRYPKPALKLLQEAGIGY CHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHCCCCC GGWLPNFEVPRVFSSFRLTVHIPRRPYVTALPGIPTIRPFEALACGIPLISAPWDDCDAL CCCCCCCCHHHHHCCCEEEEEECCCCCEEECCCCCCCCCHHHHHCCCCCCCCCCCCHHHH FSPDRDFVYAGSGEEMQRQMCALLDDTARAGRLACHGRGTILARHTCGHRIDELLQICRE CCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECHHHHHHHHHHHHHHH LGLPADES CCCCCCCC >Mature Secondary Structure MRVVMFYHSLVSDWNHGNAHFLRGVATELGQRGHEVRVYEPRNGWSYSNLLREKGVNALR CEEEEEEHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH RFEEVYPGLSGIPYELDKLDLHKALAGADLVIVHEWNEHELVHRIGEHRKKNGNYRLLFH HHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEEEE DTHHRSVTDAGAMDAYDLSGFDGVLAYGGRIREIYLQKGWAERVWIWHEAADVRVFRPVE CCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEEEEEECCCCCCEEEEEEECCCEEEECCCC GAQKAGDVVWIGNWEDDERSEEIREFFVEPVRRLGLKAAVYGVRYPKPALKLLQEAGIGY CHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHCCCCC GGWLPNFEVPRVFSSFRLTVHIPRRPYVTALPGIPTIRPFEALACGIPLISAPWDDCDAL CCCCCCCCHHHHHCCCEEEEEECCCCCEEECCCCCCCCCHHHHHCCCCCCCCCCCCHHHH FSPDRDFVYAGSGEEMQRQMCALLDDTARAGRLACHGRGTILARHTCGHRIDELLQICRE CCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECHHHHHHHHHHHHHHH LGLPADES CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA