| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118023
Identifier: 197118023
GI number: 197118023
Start: 1900731
End: 1902143
Strand: Direct
Name: 197118023
Synonym: Gbem_1636
Alternate gene names: NA
Gene position: 1900731-1902143 (Clockwise)
Preceding gene: 197118022
Following gene: 197118024
Centisome position: 41.18
GC content: 55.77
Gene sequence:
>1413_bases TTGAGAGCTACTGTTTTGATGTCACTGTTTTTCTTGCTTCTGCTATCTAAAGTGGCCTTGGCAGACAGTTATCTTCCTTT GGACAGTCGGCTGTATGGGGACCTGAGGTTTCTTGAAGCAAACGGTGGGATAACCACCGCGCAGTTGTCCACCCTTCCGA TCTCGCGCAGGGAGGCGGCCCGGCTGACATCGGAGGCAATCCACAACGTAGCGGCTGACGACTCTTTTCGCGTGCAGGCA GCCCTCGCCCGGCTGAAAAGGGAATTCCGCAGGGAACTGGAGGGTGATACCTCTCCAGAGTTCGTCATGGATACCGTGGA TCTGCAGTATATGTACAGTGACGATAAAGGCTTCTTCTGGCAGAAAAACAGGGACGGCGTCGAGGTCAGAGGGGGACACA ACCTTTTCCTGAACGCGACCGGTCGTTTCGACAGCAAATACGTAGGCGCAGTGGTCAGGCCCGAGGCGGATCTGTACGAG GCTGATGCCGGGCTTCGGCTGAAAAAGGCCTACCTCCTTGCCAATCTCGGCCGCGAGGAATTCGTGCTGGGGAAAGAAAG CCAGTGGTGGGGTACCGGCATTAACGGTTCGCCGTTGTTGTCGAACAACGCTGACCCGCTGACCATCTTCAAGATCTCCA ACAGTGTTCCCTATTTTCCCTTCGGTATCGGCGTCCGCGGCAGCTTCTTTATCTCCAGGCTGGAGGAGGAGCGAACGGAT GTAGACCGGCCGATACTGTACGGCCTCCGACTGGACCTGAAGCCTTTTCCCTGGTTGGAACTGGGGTTGGCGAAGACGGC GCTTTTAGGGGGGGAAGGGCGCAATGCCGGTATACGCACCTTCGGCAACAGCTTGTTGGGGCGGGGAGAAAATGAAGAGG GTGAGGCCGGCGATCAAAGAGCCGGCCTGGATGCCAAGGTGGTAATACCGTGGCGAGTGCAGCCGATAACGCTTTCTGTC GAGATGACAGGCGAGGATCAACGCAACAACTTTCCGGAGAAGTGGTTCGGCGTCTACGGTATCTATCTTCCCCGGGTTCT GAGTCTGGAGAGGCTCGAAGTCAGCGCCGAATATGCGGACAACGTGGACGCCACCTACAAAGGGTTCTGGTACACCCATC ACATCTATTCCCAAGGGTATACCTATCACGGCAGGATTATCGGTCACTACATCGGAGGCGACGCAAGGGACCTCTTCCTG CGGGGGCAATATCACTTTGACCCCCTGATTCTGTCTCTGTCGTATGAAAATCTTCGCAAGGGGTATCCGGAGAGGTTTCG ATGGGAAAGCTTTGAAGCCTCCGCTCTCACCGAACTCTCCAACCAGACCGACCTTACGATTTCCGCAGGCTATGCCAGGG AGGCGGAGAAGAATTTCATCATGCGGATAGGGCTGAGGCATTACTTCATGTGA
Upstream 100 bases:
>100_bases AAACTCTTTTAAATTGAACCATTCTGTTTGCCATCACTGTATTTGTTTGCTACATATAAATAATATTGTCTAATTTGTGC CTATTAAAAGGAGAGGGCCG
Downstream 100 bases:
>100_bases GGACAGCCGCAAAGACGCTAAGAAAAACCAAAGCTGCAAAAGCTTCTCACGCAAAGCCGCAAAGACGCGGAGAAAGCCAA AAGGTCTCTCCTTTGCGCCT
Product: hypothetical protein
Products: NA
Alternate protein names: ORF3 [H]
Number of amino acids: Translated: 470; Mature: 470
Protein sequence:
>470_residues MRATVLMSLFFLLLLSKVALADSYLPLDSRLYGDLRFLEANGGITTAQLSTLPISRREAARLTSEAIHNVAADDSFRVQA ALARLKREFRRELEGDTSPEFVMDTVDLQYMYSDDKGFFWQKNRDGVEVRGGHNLFLNATGRFDSKYVGAVVRPEADLYE ADAGLRLKKAYLLANLGREEFVLGKESQWWGTGINGSPLLSNNADPLTIFKISNSVPYFPFGIGVRGSFFISRLEEERTD VDRPILYGLRLDLKPFPWLELGLAKTALLGGEGRNAGIRTFGNSLLGRGENEEGEAGDQRAGLDAKVVIPWRVQPITLSV EMTGEDQRNNFPEKWFGVYGIYLPRVLSLERLEVSAEYADNVDATYKGFWYTHHIYSQGYTYHGRIIGHYIGGDARDLFL RGQYHFDPLILSLSYENLRKGYPERFRWESFEASALTELSNQTDLTISAGYAREAEKNFIMRIGLRHYFM
Sequences:
>Translated_470_residues MRATVLMSLFFLLLLSKVALADSYLPLDSRLYGDLRFLEANGGITTAQLSTLPISRREAARLTSEAIHNVAADDSFRVQA ALARLKREFRRELEGDTSPEFVMDTVDLQYMYSDDKGFFWQKNRDGVEVRGGHNLFLNATGRFDSKYVGAVVRPEADLYE ADAGLRLKKAYLLANLGREEFVLGKESQWWGTGINGSPLLSNNADPLTIFKISNSVPYFPFGIGVRGSFFISRLEEERTD VDRPILYGLRLDLKPFPWLELGLAKTALLGGEGRNAGIRTFGNSLLGRGENEEGEAGDQRAGLDAKVVIPWRVQPITLSV EMTGEDQRNNFPEKWFGVYGIYLPRVLSLERLEVSAEYADNVDATYKGFWYTHHIYSQGYTYHGRIIGHYIGGDARDLFL RGQYHFDPLILSLSYENLRKGYPERFRWESFEASALTELSNQTDLTISAGYAREAEKNFIMRIGLRHYFM >Mature_470_residues MRATVLMSLFFLLLLSKVALADSYLPLDSRLYGDLRFLEANGGITTAQLSTLPISRREAARLTSEAIHNVAADDSFRVQA ALARLKREFRRELEGDTSPEFVMDTVDLQYMYSDDKGFFWQKNRDGVEVRGGHNLFLNATGRFDSKYVGAVVRPEADLYE ADAGLRLKKAYLLANLGREEFVLGKESQWWGTGINGSPLLSNNADPLTIFKISNSVPYFPFGIGVRGSFFISRLEEERTD VDRPILYGLRLDLKPFPWLELGLAKTALLGGEGRNAGIRTFGNSLLGRGENEEGEAGDQRAGLDAKVVIPWRVQPITLSV EMTGEDQRNNFPEKWFGVYGIYLPRVLSLERLEVSAEYADNVDATYKGFWYTHHIYSQGYTYHGRIIGHYIGGDARDLFL RGQYHFDPLILSLSYENLRKGYPERFRWESFEASALTELSNQTDLTISAGYAREAEKNFIMRIGLRHYFM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53298; Mature: 53298
Theoretical pI: Translated: 5.94; Mature: 5.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRATVLMSLFFLLLLSKVALADSYLPLDSRLYGDLRFLEANGGITTAQLSTLPISRREAA CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHEECCEEEEECCCCEEEEEEEECCCCHHHHH RLTSEAIHNVAADDSFRVQAALARLKREFRRELEGDTSPEFVMDTVDLQYMYSDDKGFFW HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCCEEE QKNRDGVEVRGGHNLFLNATGRFDSKYVGAVVRPEADLYEADAGLRLKKAYLLANLGREE ECCCCCEEEECCCEEEEEECCCCCCCEECEEECCCCCCEECCCCCEEHHHHHHHHCCCHH FVLGKESQWWGTGINGSPLLSNNADPLTIFKISNSVPYFPFGIGVRGSFFISRLEEERTD EEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEECCCCCHHHHHHHHHHHHCC VDRPILYGLRLDLKPFPWLELGLAKTALLGGEGRNAGIRTFGNSLLGRGENEEGEAGDQR CCCCEEEEEEECCCCCCCHHHHHHHHEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCHH AGLDAKVVIPWRVQPITLSVEMTGEDQRNNFPEKWFGVYGIYLPRVLSLERLEVSAEYAD CCCCEEEEEEEEEEEEEEEEEECCCHHCCCCCHHHHHHHHHHHHHHHHHHHHEEEHHHCC NVDATYKGFWYTHHIYSQGYTYHGRIIGHYIGGDARDLFLRGQYHFDPLILSLSYENLRK CCCCEEEEEEEEEEEECCCEEEECEEEEEEECCCCEEEEEECCCCCCEEEEEEEHHHHHC GYPERFRWESFEASALTELSNQTDLTISAGYAREAEKNFIMRIGLRHYFM CCCCHHCCCCCCHHHHHHCCCCCCEEEECCCCCHHHHHHEEEECHHHHCC >Mature Secondary Structure MRATVLMSLFFLLLLSKVALADSYLPLDSRLYGDLRFLEANGGITTAQLSTLPISRREAA CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHEECCEEEEECCCCEEEEEEEECCCCHHHHH RLTSEAIHNVAADDSFRVQAALARLKREFRRELEGDTSPEFVMDTVDLQYMYSDDKGFFW HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCCEEE QKNRDGVEVRGGHNLFLNATGRFDSKYVGAVVRPEADLYEADAGLRLKKAYLLANLGREE ECCCCCEEEECCCEEEEEECCCCCCCEECEEECCCCCCEECCCCCEEHHHHHHHHCCCHH FVLGKESQWWGTGINGSPLLSNNADPLTIFKISNSVPYFPFGIGVRGSFFISRLEEERTD EEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEECCCCCHHHHHHHHHHHHCC VDRPILYGLRLDLKPFPWLELGLAKTALLGGEGRNAGIRTFGNSLLGRGENEEGEAGDQR CCCCEEEEEEECCCCCCCHHHHHHHHEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCHH AGLDAKVVIPWRVQPITLSVEMTGEDQRNNFPEKWFGVYGIYLPRVLSLERLEVSAEYAD CCCCEEEEEEEEEEEEEEEEEECCCHHCCCCCHHHHHHHHHHHHHHHHHHHHEEEHHHCC NVDATYKGFWYTHHIYSQGYTYHGRIIGHYIGGDARDLFLRGQYHFDPLILSLSYENLRK CCCCEEEEEEEEEEEECCCEEEECEEEEEEECCCCEEEEEECCCCCCEEEEEEEHHHHHC GYPERFRWESFEASALTELSNQTDLTISAGYAREAEKNFIMRIGLRHYFM CCCCHHCCCCCCHHHHHHCCCCCCEEEECCCCCHHHHHHEEEECHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7896702 [H]