| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118022
Identifier: 197118022
GI number: 197118022
Start: 1898813
End: 1900444
Strand: Direct
Name: 197118022
Synonym: Gbem_1635
Alternate gene names: NA
Gene position: 1898813-1900444 (Clockwise)
Preceding gene: 197118021
Following gene: 197118023
Centisome position: 41.14
GC content: 60.36
Gene sequence:
>1632_bases ATGAGATTTTTCCTGGTAGCACTCGTCGTTGGTATCACTAGCTTCGCTTCTTCAGCTTTTGCCCTTTCTTCCGCCAACAT CCCTCTCGACAGCCCCATCTATCTATACCTGGAAAAGCTCTCGGGCTATGGCCTCGTCTCTGGCGATGTGAAGGGGATCC GTCCTTTCTCGAAGGCCGAGGCGGTGCGGCTCCTGCGTGAGGCGGAAACGCGCCTTGCCTCCGGCGACCCCCCCCCGCTT GCGGATGAGATGGTCCAGCGGCTGAGGGAGCTTTTGCCACGCGAGGCGGCCCTTTATGCCGACGAGGGAAAGGCAAAAAC CCTGGATTTCGAGCCGGTTGCTGCCGCGCGCCTTCGCTACGTGTATTTGGATGGTAAGCCGCGCAGCTACTTCCGCGCGG TGCAAGATGGGGGCAACGAAGGCGTCTTCGGCATCGGCAGCGGCCTCAGGCCGGCGACCCCTTACCCCAATCCCGTTCAG CAGCGCGGCTTCGAGGGGACACCGCTTTTTGAAAACAACGACGGCGTGGTCTACCACTCCGGCTCCAACCTCGACCTGCG CGGTAGCGGCGAGGCTTACTGGGGGGCAAAGGCGGCCTTGCTTGTTGAGCCGATGCTGCTTTGGTCGGAAAAGACCGACG AGGCGACGCTGCGCCTGAACCGGGGTTACATAAAGTTCGGCGGCAAGGGTCTGGAGCTGGAGGCGGGGCGTGACGAGAAC TGGCTGGGACCCGGCTACCGCGGCGCCATCACGCTTACCAACAACGCGCGCAACATGGACCTGGTGAAACTGTCGAGCCC GGAGCTTGTTTCCACCAAATATCTTTGGGACCTGAAATATACACTTATCTTTTCTCAGCTGGAAAAAACGGTGACTGACG GTCAGGAAAGAGAGCCCTGGTTTTTTGCCGGGAAGCTCTCGATGAAACCGACGCAGAATATAGAATTCGGCATCAACCTC GGACGGCAACTCGGCGGGCCGGGCGTTAGCAACAGTCTCGGTGACAACGCTCGCGGGCTGATCGGCGGCTGGAACCATGA CAATTCCAACACATTGGCCGGTGTCGATCTTCGCTTCAGGCTCCCCTGGCTCAGAAACAGCGAACTGTACGGAGAGTTTT CCGGCGAGGATGCCGCCGCGTTCTGGCCCATCGTCGAGAGCTACGTGGCCGGCTTCTTTATCCCGACACTGACCGAGAGC GGCCGGGACGACCTCCGCTTCGAATACTTCCGTGGCAACGAGATCCTCTACACCAACGGGACTTTCCCGGAGGGGTACCT GTCTCACGGGCTCCCGATCGGGCATTCCCAGGGGGGGGCGGCCGAGGAGTGGTTCCTGCGCTACAGCCACTGGTTTTCCG TGCGTAACAACCTGGCTCTTGAGGGAATGCACAGCACCCGCGGGGACTATGGGCGGATGACGGTCGACGCAATGGGCAAA TTCGACGCCGCCGGAGTCATGCAGGCTGTTGAGCGCAGGAACGCACTGCGCGCCTTCTGGAGTTTCCCGGTCCAGGGGGA ATGGAATGCCCTCCTGATGTACGGGCACGAGTGGATCGATAACCTTGAGCTGAGGCAGGGGGAGAGCCGCAAGAACCAGC TCTTAAGGGCTGAACTGACCTACCGATATTAA
Upstream 100 bases:
>100_bases AAGACGGGATCACCAGGGTTGTTAACGATCTGTGATAGTGACTTCTTTTTTTGCGGGTACCCTTTGCGCCTTTGCGGCTT TGCGTGAGAGAATGTAATTT
Downstream 100 bases:
>100_bases GATTAAGATTGAGATTGAGATCTGTTGTTGCTGGGCCGGCTCCACCGATGTGGCGCCGGCTTTTTTTTGCCAGTTGTCGC CTTTCTCACGAACAAGCATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 543; Mature: 543
Protein sequence:
>543_residues MRFFLVALVVGITSFASSAFALSSANIPLDSPIYLYLEKLSGYGLVSGDVKGIRPFSKAEAVRLLREAETRLASGDPPPL ADEMVQRLRELLPREAALYADEGKAKTLDFEPVAAARLRYVYLDGKPRSYFRAVQDGGNEGVFGIGSGLRPATPYPNPVQ QRGFEGTPLFENNDGVVYHSGSNLDLRGSGEAYWGAKAALLVEPMLLWSEKTDEATLRLNRGYIKFGGKGLELEAGRDEN WLGPGYRGAITLTNNARNMDLVKLSSPELVSTKYLWDLKYTLIFSQLEKTVTDGQEREPWFFAGKLSMKPTQNIEFGINL GRQLGGPGVSNSLGDNARGLIGGWNHDNSNTLAGVDLRFRLPWLRNSELYGEFSGEDAAAFWPIVESYVAGFFIPTLTES GRDDLRFEYFRGNEILYTNGTFPEGYLSHGLPIGHSQGGAAEEWFLRYSHWFSVRNNLALEGMHSTRGDYGRMTVDAMGK FDAAGVMQAVERRNALRAFWSFPVQGEWNALLMYGHEWIDNLELRQGESRKNQLLRAELTYRY
Sequences:
>Translated_543_residues MRFFLVALVVGITSFASSAFALSSANIPLDSPIYLYLEKLSGYGLVSGDVKGIRPFSKAEAVRLLREAETRLASGDPPPL ADEMVQRLRELLPREAALYADEGKAKTLDFEPVAAARLRYVYLDGKPRSYFRAVQDGGNEGVFGIGSGLRPATPYPNPVQ QRGFEGTPLFENNDGVVYHSGSNLDLRGSGEAYWGAKAALLVEPMLLWSEKTDEATLRLNRGYIKFGGKGLELEAGRDEN WLGPGYRGAITLTNNARNMDLVKLSSPELVSTKYLWDLKYTLIFSQLEKTVTDGQEREPWFFAGKLSMKPTQNIEFGINL GRQLGGPGVSNSLGDNARGLIGGWNHDNSNTLAGVDLRFRLPWLRNSELYGEFSGEDAAAFWPIVESYVAGFFIPTLTES GRDDLRFEYFRGNEILYTNGTFPEGYLSHGLPIGHSQGGAAEEWFLRYSHWFSVRNNLALEGMHSTRGDYGRMTVDAMGK FDAAGVMQAVERRNALRAFWSFPVQGEWNALLMYGHEWIDNLELRQGESRKNQLLRAELTYRY >Mature_543_residues MRFFLVALVVGITSFASSAFALSSANIPLDSPIYLYLEKLSGYGLVSGDVKGIRPFSKAEAVRLLREAETRLASGDPPPL ADEMVQRLRELLPREAALYADEGKAKTLDFEPVAAARLRYVYLDGKPRSYFRAVQDGGNEGVFGIGSGLRPATPYPNPVQ QRGFEGTPLFENNDGVVYHSGSNLDLRGSGEAYWGAKAALLVEPMLLWSEKTDEATLRLNRGYIKFGGKGLELEAGRDEN WLGPGYRGAITLTNNARNMDLVKLSSPELVSTKYLWDLKYTLIFSQLEKTVTDGQEREPWFFAGKLSMKPTQNIEFGINL GRQLGGPGVSNSLGDNARGLIGGWNHDNSNTLAGVDLRFRLPWLRNSELYGEFSGEDAAAFWPIVESYVAGFFIPTLTES GRDDLRFEYFRGNEILYTNGTFPEGYLSHGLPIGHSQGGAAEEWFLRYSHWFSVRNNLALEGMHSTRGDYGRMTVDAMGK FDAAGVMQAVERRNALRAFWSFPVQGEWNALLMYGHEWIDNLELRQGESRKNQLLRAELTYRY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60595; Mature: 60595
Theoretical pI: Translated: 5.59; Mature: 5.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFFLVALVVGITSFASSAFALSSANIPLDSPIYLYLEKLSGYGLVSGDVKGIRPFSKAE CHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCEEEEEHHCCCEEEECCCCCCCCCHHHH AVRLLREAETRLASGDPPPLADEMVQRLRELLPREAALYADEGKAKTLDFEPVAAARLRY HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEECCCCCCEEEEEE VYLDGKPRSYFRAVQDGGNEGVFGIGSGLRPATPYPNPVQQRGFEGTPLFENNDGVVYHS EEECCCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCEECCCCEEEEC GSNLDLRGSGEAYWGAKAALLVEPMLLWSEKTDEATLRLNRGYIKFGGKGLELEAGRDEN CCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCEEEECCCEEEEECCCCCC WLGPGYRGAITLTNNARNMDLVKLSSPELVSTKYLWDLKYTLIFSQLEKTVTDGQEREPW CCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCE FFAGKLSMKPTQNIEFGINLGRQLGGPGVSNSLGDNARGLIGGWNHDNSNTLAGVDLRFR EEEEEEECCCCCCEEEEEECCHHCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEEE LPWLRNSELYGEFSGEDAAAFWPIVESYVAGFFIPTLTESGRDDLRFEYFRGNEILYTNG CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEECC TFPEGYLSHGLPIGHSQGGAAEEWFLRYSHWFSVRNNLALEGMHSTRGDYGRMTVDAMGK CCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEHHHCCC FDAAGVMQAVERRNALRAFWSFPVQGEWNALLMYGHEWIDNLELRQGESRKNQLLRAELT CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHCCCHHCCCCCHHHHEEEEEEE YRY ECC >Mature Secondary Structure MRFFLVALVVGITSFASSAFALSSANIPLDSPIYLYLEKLSGYGLVSGDVKGIRPFSKAE CHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCEEEEEHHCCCEEEECCCCCCCCCHHHH AVRLLREAETRLASGDPPPLADEMVQRLRELLPREAALYADEGKAKTLDFEPVAAARLRY HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEECCCCCCEEEEEE VYLDGKPRSYFRAVQDGGNEGVFGIGSGLRPATPYPNPVQQRGFEGTPLFENNDGVVYHS EEECCCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCEECCCCEEEEC GSNLDLRGSGEAYWGAKAALLVEPMLLWSEKTDEATLRLNRGYIKFGGKGLELEAGRDEN CCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCEEEECCCEEEEECCCCCC WLGPGYRGAITLTNNARNMDLVKLSSPELVSTKYLWDLKYTLIFSQLEKTVTDGQEREPW CCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCE FFAGKLSMKPTQNIEFGINLGRQLGGPGVSNSLGDNARGLIGGWNHDNSNTLAGVDLRFR EEEEEEECCCCCCEEEEEECCHHCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEEE LPWLRNSELYGEFSGEDAAAFWPIVESYVAGFFIPTLTESGRDDLRFEYFRGNEILYTNG CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEECC TFPEGYLSHGLPIGHSQGGAAEEWFLRYSHWFSVRNNLALEGMHSTRGDYGRMTVDAMGK CCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEHHHCCC FDAAGVMQAVERRNALRAFWSFPVQGEWNALLMYGHEWIDNLELRQGESRKNQLLRAELT CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHCCCHHCCCCCHHHHEEEEEEE YRY ECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA