| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118001
Identifier: 197118001
GI number: 197118001
Start: 1872927
End: 1873760
Strand: Direct
Name: 197118001
Synonym: Gbem_1614
Alternate gene names: NA
Gene position: 1872927-1873760 (Clockwise)
Preceding gene: 197118000
Following gene: 197118002
Centisome position: 40.58
GC content: 57.07
Gene sequence:
>834_bases ATGTCCCCACTGCTTAAGAGTAGGTACCCTGAGGCTTGTGGCAGCTTCCAGGTTTTTGCCAAGGAGTGGAGCGTATCGCT GCAGCGGCAGCGTTCCTTTTGCTCAAGGACGCTCGGCGGACTCGGGGATAAGACCGTCCTTGTCCTTGGCTGCGGCTTTG GGGACGATGCTGTCGCTTGGTTCCCTCATCGCCCGGGCAGGGTCATTGGGGTGGACATAGTCAACTATCAGAGATGCTGG GACGAGGCAATCGCAAAGTTCTCGAACGGGTGCACCAGCATCACGTTCCTGCAGCGCGACCTGGTGGGGGAGGACTGGAG CTTCATCGGGCAGGAAGGCGTAGACGTCATCTTCAGCTATGCCGTCCTTGAGCACATCTCTGACCTGTCACAGATGGCTC GCCGCGCCTTTGACGCCCTTAAACCGGGCGGGCTTTTCGTCGCCACCTATGGTCCTCTCTGGTACGGTCCCAACGGCGAT CACACGTTCCCGCTGGCGGAAGACGACTACTATAACCACTTGATGCTGGATGACACTGAGTACGACAGATACATTGACCG GACCATGAGCGAATGGAAGCACCATGAGCACGGCTGCGAGGGCCCCTTCCTGCTGGAAAGGGGGTATTTTTCCTTTCTGC GCCCTGAAGAGTACCTGCGCATCTTCGTCGAGGCCGGTTACGAGATTTGCAATTCGCATCTGAACATATCCACTGCGGCT GAGCGGTATTTTGACAAGCACCCGGAGCGCCTTCCCTACCTGAAGGAACGCTATGGCCTGAATACGCTGGATCTCTATGC CAACGGCAGCGTCATCATCTTGAGGAAATCCTGA
Upstream 100 bases:
>100_bases GGTTATTGACGCCACCGACCGCAGCCCGGCAGGACATGTCTTCTGCTTCGAGCCGTCGAGGCGACTTAAGGACCTCTTCT GCGTGGCACGAGAAAGACTG
Downstream 100 bases:
>100_bases CATGTGTGGCATCTTTGGAGCACTATCGCCGCAGTCCGCCCCGGTGGAGCAACTGTACGAGAAGATTGCCAGCCTCGCCC ACCGCGGTCCCGATGACTCA
Product: SAM-dependent methyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 277; Mature: 276
Protein sequence:
>277_residues MSPLLKSRYPEACGSFQVFAKEWSVSLQRQRSFCSRTLGGLGDKTVLVLGCGFGDDAVAWFPHRPGRVIGVDIVNYQRCW DEAIAKFSNGCTSITFLQRDLVGEDWSFIGQEGVDVIFSYAVLEHISDLSQMARRAFDALKPGGLFVATYGPLWYGPNGD HTFPLAEDDYYNHLMLDDTEYDRYIDRTMSEWKHHEHGCEGPFLLERGYFSFLRPEEYLRIFVEAGYEICNSHLNISTAA ERYFDKHPERLPYLKERYGLNTLDLYANGSVIILRKS
Sequences:
>Translated_277_residues MSPLLKSRYPEACGSFQVFAKEWSVSLQRQRSFCSRTLGGLGDKTVLVLGCGFGDDAVAWFPHRPGRVIGVDIVNYQRCW DEAIAKFSNGCTSITFLQRDLVGEDWSFIGQEGVDVIFSYAVLEHISDLSQMARRAFDALKPGGLFVATYGPLWYGPNGD HTFPLAEDDYYNHLMLDDTEYDRYIDRTMSEWKHHEHGCEGPFLLERGYFSFLRPEEYLRIFVEAGYEICNSHLNISTAA ERYFDKHPERLPYLKERYGLNTLDLYANGSVIILRKS >Mature_276_residues SPLLKSRYPEACGSFQVFAKEWSVSLQRQRSFCSRTLGGLGDKTVLVLGCGFGDDAVAWFPHRPGRVIGVDIVNYQRCWD EAIAKFSNGCTSITFLQRDLVGEDWSFIGQEGVDVIFSYAVLEHISDLSQMARRAFDALKPGGLFVATYGPLWYGPNGDH TFPLAEDDYYNHLMLDDTEYDRYIDRTMSEWKHHEHGCEGPFLLERGYFSFLRPEEYLRIFVEAGYEICNSHLNISTAAE RYFDKHPERLPYLKERYGLNTLDLYANGSVIILRKS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31764; Mature: 31633
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPLLKSRYPEACGSFQVFAKEWSVSLQRQRSFCSRTLGGLGDKTVLVLGCGFGDDAVAW CCCCHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEE FPHRPGRVIGVDIVNYQRCWDEAIAKFSNGCTSITFLQRDLVGEDWSFIGQEGVDVIFSY CCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHCHHHHHHHHHH AVLEHISDLSQMARRAFDALKPGGLFVATYGPLWYGPNGDHTFPLAEDDYYNHLMLDDTE HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEECCCCCCCCCCCCCCCCCEEEECCCH YDRYIDRTMSEWKHHEHGCEGPFLLERGYFSFLRPEEYLRIFVEAGYEICNSHLNISTAA HHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHH ERYFDKHPERLPYLKERYGLNTLDLYANGSVIILRKS HHHHHCCCCCCCHHHHHHCCCEEEEEECCCEEEEECC >Mature Secondary Structure SPLLKSRYPEACGSFQVFAKEWSVSLQRQRSFCSRTLGGLGDKTVLVLGCGFGDDAVAW CCCHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEE FPHRPGRVIGVDIVNYQRCWDEAIAKFSNGCTSITFLQRDLVGEDWSFIGQEGVDVIFSY CCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHCHHHHHHHHHH AVLEHISDLSQMARRAFDALKPGGLFVATYGPLWYGPNGDHTFPLAEDDYYNHLMLDDTE HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEECCCCCCCCCCCCCCCCCEEEECCCH YDRYIDRTMSEWKHHEHGCEGPFLLERGYFSFLRPEEYLRIFVEAGYEICNSHLNISTAA HHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHH ERYFDKHPERLPYLKERYGLNTLDLYANGSVIILRKS HHHHHCCCCCCCHHHHHHCCCEEEEEECCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA