| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is kpsD [H]
Identifier: 197117991
GI number: 197117991
Start: 1859843
End: 1862701
Strand: Direct
Name: kpsD [H]
Synonym: Gbem_1604
Alternate gene names: 197117991
Gene position: 1859843-1862701 (Clockwise)
Preceding gene: 197117990
Following gene: 197117992
Centisome position: 40.3
GC content: 57.96
Gene sequence:
>2859_bases ATGAAGAAAATCCTGCTGTTCGCTGTTTTGCTCGCCTTCCTTTCCAACGCCATAGCCTTCCCCGCCTCACAACCCGAGGC TCAATATTCATCATCTGGAACTTCTGCCAACGCCGGCATGAAAGAGAACGGCTCCATCTTCGGCGCCTCGGACTATTTCA AGCTGCCGGACCCCGAAGATGAGGCTGACACCATCTCCAAACCCCAGATGGACAAGGGGGAGAGGGATTCGCGGCGCCAG CGCGCCCGCGGTGAGGATGTCGATACCTCACGATACGATGATCGCCAGGAACAAAGTGCGGATGAGATCTCCAGCGACGA CACCTACGACAATTCCTACGATAACTCTTTTGACAACTCCTATGACAGCTCCTATGACAACTCCTCTGACAGCTCCTCTG ACAGGTCATACGATAGCTCTTACGAGAAACGCTATGAAAAGCCGTACAACGTCAATGACGGTGAGGCGCTCAAGGAAGAC AAGGAGCCTAAGAAGGACAAGGACGGCAAGGAACTAAACGAAGAGAAGAAGCGTTCCGATATTAAGACCGGCAAGGAGCG TGTGAAACGGAGCAAGGTCGCCAGAAAGACCCGCCCGGGGCAGCGCAAGGCGAAGGAGTTGTCCACCCTTGAACGCGCCA TGAGCGAAAACCCGGTGACGGCTGACAAGGCGAAGCCTGAGCCCTATGGCAATAAACAGCTGATCCAGTTCGGCTACAAC TTCTTCAAGTCCAAGGAAGATCCCTTCGCTTCACAGACAGACGTTCCGGTCGGCCCCGACTACATCATCGGTGCGGGCGA CCGTCTGATCCTGACCGTATGGGGAAGCCTCAACGGCACCTACAAGCTCGACGTTAGCCGCAGCGGAGATATCGTCATCC CCAAAGTGGGCGCTGTCAAAGTCGGCGGACAGAGCTACGGACAGCTTCCTGCGCTGCTCAAAAACCACATCGCTCGCATC TACAAAGACTTCGAATTGAACGTCAACATGGGGCAGCTCAGGCTGGTCAAGGTTTACGTGGTGGGCGAAGTTGCCTCTCC CGGCGACTACAACATAAGCTCCCTTTCCACCCTCATCGGTGCCCTTTCCGAGGCCGGCGGCCCCACCAAGAACGGCAGTC TCAGGAACATCCAGATCAACAGGAACGGCAAGCTCCTCGAAACGGTGGACCTCTACGATTTCTTCCTCAAAGGGGACAAA GGGAAAGACATCCGGCTGCAGCCGGGCGACACCGTGCTTGTCCCTGTGATAGGGAAGGTAGCGGGGGTCGCGGGCAACGT GCGCCGCCCGGGCATCTACGAGTTGAAGGGACAAACGACGCTGAAGGATCTGCTGGCGCTCGCCGGGGGGATCAACTCCA TAGGCTACCTGCAGCGGGTCCAGTTGTACCGGGTCCAGGCGCACGACAAGAAGGTCGTCACCGACGTCAACCTCGATGTA ATCGGCAAGACTTCCGAAGATATCACCGCTGCAGTCCCGGTCCAGGACCTCGACTTGGTCAAAGTACTCTCCATCGACCG GGTGCTGCGTGGCTACGTGCGCCTGGAAGGGCACGTGGTCCGGCCTGGCGATTACGCGCTGAAGCCGGGTATGAAGATCA GCTCCCTGGTGCAGAAAGATAGCCTGCTCCCCGAGTACCACGCGGCCACTGGCCAGATCATCAGGCTTTTTGCCCCCGAC CTGCACCCCGAGGTGGTCCCGTTCGACGTCTCCCGTGCCATGGCGGGGGAGGCGGGGCAGGACCTGGAACTGAAGGAGTT CGACCGGGTGAAGATCTTCTCCAAGCGCGAAATGGAGGAGGTCCCCGTGGTCAAGGTGAGCGGAGAGGTGAAGCGCCCCG GACCCGTCCGCTACATGGAGAACATGACGGTGCGCGACCTGCTGACTCAGGCCGGCAACGTGAAGCTCTCAGCCTACCTG AAGAACGCCGAAATCACCAGGATCAAGCGTACCGGCGACGCCGTCACCTCGTTCACCATCACAGTGGATCTGGAAAAAGC CATGGCAGGCGGCGAAGCGAACATCAAGCTGTCTCCTTTCGACGAGCTGACCGTACGGCGCATACCCAACTGGGCCGAGG CGAAGGAGCGCTACGTAACGCTCAAAGGGGAATTCGTTTTCCCGGGCACCTATCCCATCTCGAAAGGGGAGCGGCTCAGT TCCGTCATTGCAAGAGCCGGCGGCTTCACCGATCGGGCCTACCTCAAGGGGACTCGCTTTACCCGGGAGAGCGCCAGGAA ACTGCAGCAGCAGCGCATGGACGAGTCGCTGGCCAAGGCACAGGAAAACATCATCAAGCTCCAGACCAACATGTCGCAGA CAGCATCCTCCGCCGAGGAAGTGGCCAGCTCGAAGACCACCCTGGAAGGGCTGATGCAGAGCGTCGAGATTCTGAAGCAG AAGAAGGCCGAAGGGCGTGTGCTGATTGAGATAGCCTCACTGAAGGAGCTTGAGGGGAGCAATTACGACGTCGAGTTGCA AGGCGGGGACAAACTGAGCATTCCTAGCGACCCCGGCGGCATCAACGTAATCGGTGACGTCTATAACCAGAACACCATCG TGGCGCAGAAGGGGCGTAGCGTCGAGTGGTATCTGAAACAGGTTGGTGGCGCGACCGCAGATGCGGATACCGACGGTATT TATGTCGTGAAGGTGGACGGTTCGGTCACAAGCCAGGCCAACTCCACGAAATTCTTGTTCTACAACTCCTTCTGGGGCAA GCCGCTTGATTCCGGGGACACCATCATCGTACCAAGGCAGTACGAGAAGACCGCCTACCTTAGGAATATGAAGGACATTG CCACCATCATAGGTAACATAGCTGTAATGGCCGGTGTGTTGGTGGCTGCAGGCCTTTAG
Upstream 100 bases:
>100_bases CATTTCATTTACATTAGAAGTTTAACGTGATATATCCGTGCTGCGAAAAGCCTGTCAATGAACGTCTGAGTCATCTCATG AAGTAGGGGTACGCATAAGC
Downstream 100 bases:
>100_bases GCTGGTAATTCCTTTAGTTGTGTCGCGTCCGGGAGCGGGCATCGCAGATTTACCACCTTACTAACTGGATTTCGCGCTTT CCGGCGCAGGAGCAACTCGA
Product: polysaccharide biosynthesis/export protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 952; Mature: 952
Protein sequence:
>952_residues MKKILLFAVLLAFLSNAIAFPASQPEAQYSSSGTSANAGMKENGSIFGASDYFKLPDPEDEADTISKPQMDKGERDSRRQ RARGEDVDTSRYDDRQEQSADEISSDDTYDNSYDNSFDNSYDSSYDNSSDSSSDRSYDSSYEKRYEKPYNVNDGEALKED KEPKKDKDGKELNEEKKRSDIKTGKERVKRSKVARKTRPGQRKAKELSTLERAMSENPVTADKAKPEPYGNKQLIQFGYN FFKSKEDPFASQTDVPVGPDYIIGAGDRLILTVWGSLNGTYKLDVSRSGDIVIPKVGAVKVGGQSYGQLPALLKNHIARI YKDFELNVNMGQLRLVKVYVVGEVASPGDYNISSLSTLIGALSEAGGPTKNGSLRNIQINRNGKLLETVDLYDFFLKGDK GKDIRLQPGDTVLVPVIGKVAGVAGNVRRPGIYELKGQTTLKDLLALAGGINSIGYLQRVQLYRVQAHDKKVVTDVNLDV IGKTSEDITAAVPVQDLDLVKVLSIDRVLRGYVRLEGHVVRPGDYALKPGMKISSLVQKDSLLPEYHAATGQIIRLFAPD LHPEVVPFDVSRAMAGEAGQDLELKEFDRVKIFSKREMEEVPVVKVSGEVKRPGPVRYMENMTVRDLLTQAGNVKLSAYL KNAEITRIKRTGDAVTSFTITVDLEKAMAGGEANIKLSPFDELTVRRIPNWAEAKERYVTLKGEFVFPGTYPISKGERLS SVIARAGGFTDRAYLKGTRFTRESARKLQQQRMDESLAKAQENIIKLQTNMSQTASSAEEVASSKTTLEGLMQSVEILKQ KKAEGRVLIEIASLKELEGSNYDVELQGGDKLSIPSDPGGINVIGDVYNQNTIVAQKGRSVEWYLKQVGGATADADTDGI YVVKVDGSVTSQANSTKFLFYNSFWGKPLDSGDTIIVPRQYEKTAYLRNMKDIATIIGNIAVMAGVLVAAGL
Sequences:
>Translated_952_residues MKKILLFAVLLAFLSNAIAFPASQPEAQYSSSGTSANAGMKENGSIFGASDYFKLPDPEDEADTISKPQMDKGERDSRRQ RARGEDVDTSRYDDRQEQSADEISSDDTYDNSYDNSFDNSYDSSYDNSSDSSSDRSYDSSYEKRYEKPYNVNDGEALKED KEPKKDKDGKELNEEKKRSDIKTGKERVKRSKVARKTRPGQRKAKELSTLERAMSENPVTADKAKPEPYGNKQLIQFGYN FFKSKEDPFASQTDVPVGPDYIIGAGDRLILTVWGSLNGTYKLDVSRSGDIVIPKVGAVKVGGQSYGQLPALLKNHIARI YKDFELNVNMGQLRLVKVYVVGEVASPGDYNISSLSTLIGALSEAGGPTKNGSLRNIQINRNGKLLETVDLYDFFLKGDK GKDIRLQPGDTVLVPVIGKVAGVAGNVRRPGIYELKGQTTLKDLLALAGGINSIGYLQRVQLYRVQAHDKKVVTDVNLDV IGKTSEDITAAVPVQDLDLVKVLSIDRVLRGYVRLEGHVVRPGDYALKPGMKISSLVQKDSLLPEYHAATGQIIRLFAPD LHPEVVPFDVSRAMAGEAGQDLELKEFDRVKIFSKREMEEVPVVKVSGEVKRPGPVRYMENMTVRDLLTQAGNVKLSAYL KNAEITRIKRTGDAVTSFTITVDLEKAMAGGEANIKLSPFDELTVRRIPNWAEAKERYVTLKGEFVFPGTYPISKGERLS SVIARAGGFTDRAYLKGTRFTRESARKLQQQRMDESLAKAQENIIKLQTNMSQTASSAEEVASSKTTLEGLMQSVEILKQ KKAEGRVLIEIASLKELEGSNYDVELQGGDKLSIPSDPGGINVIGDVYNQNTIVAQKGRSVEWYLKQVGGATADADTDGI YVVKVDGSVTSQANSTKFLFYNSFWGKPLDSGDTIIVPRQYEKTAYLRNMKDIATIIGNIAVMAGVLVAAGL >Mature_952_residues MKKILLFAVLLAFLSNAIAFPASQPEAQYSSSGTSANAGMKENGSIFGASDYFKLPDPEDEADTISKPQMDKGERDSRRQ RARGEDVDTSRYDDRQEQSADEISSDDTYDNSYDNSFDNSYDSSYDNSSDSSSDRSYDSSYEKRYEKPYNVNDGEALKED KEPKKDKDGKELNEEKKRSDIKTGKERVKRSKVARKTRPGQRKAKELSTLERAMSENPVTADKAKPEPYGNKQLIQFGYN FFKSKEDPFASQTDVPVGPDYIIGAGDRLILTVWGSLNGTYKLDVSRSGDIVIPKVGAVKVGGQSYGQLPALLKNHIARI YKDFELNVNMGQLRLVKVYVVGEVASPGDYNISSLSTLIGALSEAGGPTKNGSLRNIQINRNGKLLETVDLYDFFLKGDK GKDIRLQPGDTVLVPVIGKVAGVAGNVRRPGIYELKGQTTLKDLLALAGGINSIGYLQRVQLYRVQAHDKKVVTDVNLDV IGKTSEDITAAVPVQDLDLVKVLSIDRVLRGYVRLEGHVVRPGDYALKPGMKISSLVQKDSLLPEYHAATGQIIRLFAPD LHPEVVPFDVSRAMAGEAGQDLELKEFDRVKIFSKREMEEVPVVKVSGEVKRPGPVRYMENMTVRDLLTQAGNVKLSAYL KNAEITRIKRTGDAVTSFTITVDLEKAMAGGEANIKLSPFDELTVRRIPNWAEAKERYVTLKGEFVFPGTYPISKGERLS SVIARAGGFTDRAYLKGTRFTRESARKLQQQRMDESLAKAQENIIKLQTNMSQTASSAEEVASSKTTLEGLMQSVEILKQ KKAEGRVLIEIASLKELEGSNYDVELQGGDKLSIPSDPGGINVIGDVYNQNTIVAQKGRSVEWYLKQVGGATADADTDGI YVVKVDGSVTSQANSTKFLFYNSFWGKPLDSGDTIIVPRQYEKTAYLRNMKDIATIIGNIAVMAGVLVAAGL
Specific function: Involved in the translocation of the polysialic acid capsule across the outer membrane to the cell surface. May function as the periplasmic binding element of the PSA transport system, in which it transiently interacts with the membrane component of the t
COG id: COG1596
COG function: function code M; Periplasmic protein involved in polysaccharide export
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli K5 kpsD [H]
Homologues:
Organism=Escherichia coli, GI1787218, Length=168, Percent_Identity=29.7619047619048, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1788376, Length=167, Percent_Identity=28.7425149700599, Blast_Score=67, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003715 [H]
Pfam domain/function: PF02563 Poly_export [H]
EC number: NA
Molecular weight: Translated: 104797; Mature: 104797
Theoretical pI: Translated: 8.26; Mature: 8.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKILLFAVLLAFLSNAIAFPASQPEAQYSSSGTSANAGMKENGSIFGASDYFKLPDPED CHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC EADTISKPQMDKGERDSRRQRARGEDVDTSRYDDRQEQSADEISSDDTYDNSYDNSFDNS HHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC YDSSYDNSSDSSSDRSYDSSYEKRYEKPYNVNDGEALKEDKEPKKDKDGKELNEEKKRSD CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHH IKTGKERVKRSKVARKTRPGQRKAKELSTLERAMSENPVTADKAKPEPYGNKQLIQFGYN HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH FFKSKEDPFASQTDVPVGPDYIIGAGDRLILTVWGSLNGTYKLDVSRSGDIVIPKVGAVK HHCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCEEEEEECCCCCEEEECCCEEE VGGQSYGQLPALLKNHIARIYKDFELNVNMGQLRLVKVYVVGEVASPGDYNISSLSTLIG ECCCCCCCHHHHHHHHHHHHHHHHEEECCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHH ALSEAGGPTKNGSLRNIQINRNGKLLETVDLYDFFLKGDKGKDIRLQPGDTVLVPVIGKV HHHHCCCCCCCCCEEEEEECCCCCEEEHHHHHHHHHCCCCCCEEEECCCCEEEEEHHHHH AGVAGNVRRPGIYELKGQTTLKDLLALAGGINSIGYLQRVQLYRVQAHDKKVVTDVNLDV HCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHEEEECCCCEEEEECCEEE IGKTSEDITAAVPVQDLDLVKVLSIDRVLRGYVRLEGHVVRPGDYALKPGMKISSLVQKD ECCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHH SLLPEYHAATGQIIRLFAPDLHPEVVPFDVSRAMAGEAGQDLELKEFDRVKIFSKREMEE CCCCHHHHCCCCEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCHHHCCHHHHHHHHCHHH VPVVKVSGEVKRPGPVRYMENMTVRDLLTQAGNVKLSAYLKNAEITRIKRTGDAVTSFTI CCEEEECCCCCCCCCHHHHHCCHHHHHHHHCCCEEEEEEECCCEEEEEECCCCCEEEEEE TVDLEKAMAGGEANIKLSPFDELTVRRIPNWAEAKERYVTLKGEFVFPGTYPISKGERLS EEEEHHHHCCCCCEEEECCCHHHHHHHCCCHHHHCCEEEEEECCEECCCCCCCCCCHHHH SVIARAGGFTDRAYLKGTRFTRESARKLQQQRMDESLAKAQENIIKLQTNMSQTASSAEE HHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHH VASSKTTLEGLMQSVEILKQKKAEGRVLIEIASLKELEGSNYDVELQGGDKLSIPSDPGG HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHCCCCCCEEEECCCCEECCCCCCCC INVIGDVYNQNTIVAQKGRSVEWYLKQVGGATADADTDGIYVVKVDGSVTSQANSTKFLF EEEEEECCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEE YNSFWGKPLDSGDTIIVPRQYEKTAYLRNMKDIATIIGNIAVMAGVLVAAGL EECCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKKILLFAVLLAFLSNAIAFPASQPEAQYSSSGTSANAGMKENGSIFGASDYFKLPDPED CHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC EADTISKPQMDKGERDSRRQRARGEDVDTSRYDDRQEQSADEISSDDTYDNSYDNSFDNS HHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC YDSSYDNSSDSSSDRSYDSSYEKRYEKPYNVNDGEALKEDKEPKKDKDGKELNEEKKRSD CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHH IKTGKERVKRSKVARKTRPGQRKAKELSTLERAMSENPVTADKAKPEPYGNKQLIQFGYN HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH FFKSKEDPFASQTDVPVGPDYIIGAGDRLILTVWGSLNGTYKLDVSRSGDIVIPKVGAVK HHCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCEEEEEECCCCCEEEECCCEEE VGGQSYGQLPALLKNHIARIYKDFELNVNMGQLRLVKVYVVGEVASPGDYNISSLSTLIG ECCCCCCCHHHHHHHHHHHHHHHHEEECCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHH ALSEAGGPTKNGSLRNIQINRNGKLLETVDLYDFFLKGDKGKDIRLQPGDTVLVPVIGKV HHHHCCCCCCCCCEEEEEECCCCCEEEHHHHHHHHHCCCCCCEEEECCCCEEEEEHHHHH AGVAGNVRRPGIYELKGQTTLKDLLALAGGINSIGYLQRVQLYRVQAHDKKVVTDVNLDV HCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHEEEECCCCEEEEECCEEE IGKTSEDITAAVPVQDLDLVKVLSIDRVLRGYVRLEGHVVRPGDYALKPGMKISSLVQKD ECCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHH SLLPEYHAATGQIIRLFAPDLHPEVVPFDVSRAMAGEAGQDLELKEFDRVKIFSKREMEE CCCCHHHHCCCCEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCHHHCCHHHHHHHHCHHH VPVVKVSGEVKRPGPVRYMENMTVRDLLTQAGNVKLSAYLKNAEITRIKRTGDAVTSFTI CCEEEECCCCCCCCCHHHHHCCHHHHHHHHCCCEEEEEEECCCEEEEEECCCCCEEEEEE TVDLEKAMAGGEANIKLSPFDELTVRRIPNWAEAKERYVTLKGEFVFPGTYPISKGERLS EEEEHHHHCCCCCEEEECCCHHHHHHHCCCHHHHCCEEEEEECCEECCCCCCCCCCHHHH SVIARAGGFTDRAYLKGTRFTRESARKLQQQRMDESLAKAQENIIKLQTNMSQTASSAEE HHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHH VASSKTTLEGLMQSVEILKQKKAEGRVLIEIASLKELEGSNYDVELQGGDKLSIPSDPGG HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHCCCCCCEEEECCCCEECCCCCCCC INVIGDVYNQNTIVAQKGRSVEWYLKQVGGATADADTDGIYVVKVDGSVTSQANSTKFLF EEEEEECCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEE YNSFWGKPLDSGDTIIVPRQYEKTAYLRNMKDIATIIGNIAVMAGVLVAAGL EECCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8021185 [H]