| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117900
Identifier: 197117900
GI number: 197117900
Start: 1750941
End: 1752215
Strand: Reverse
Name: 197117900
Synonym: Gbem_1513
Alternate gene names: NA
Gene position: 1752215-1750941 (Counterclockwise)
Preceding gene: 197117901
Following gene: 197117899
Centisome position: 37.97
GC content: 67.29
Gene sequence:
>1275_bases ATGGCGATGCTGCTGGGAACCAAAGGAGACGACATCCTCAAGTGGCGCGAGAGCGCCCGGCTGGTGGAGGGGCTGAAGAC GCGGCTTACCTGCAAGTGGGGGCGGAGCTCCGCGCAGGAGGCGCAGTCCTTCCTGGAAGGGATGACCGAGGCGCTGGAGG CGGAGCTCGACTACGAGTCGCAGCTGGACGCGGAGCTTGCGGCCTTGCACCAGGCCCTGAGGGAAACCGTCGCCCCGGCC GGGTTGCCTCCCCTAACCGCGCGCCACGGCGAACTTCTCTCCGCCCACTTCAGCAGGCGCGGCTCGGTCCTCGCGCTGAC CGGCGCAGGCAACGCCTGGCACGACCTCCTGGTGGCGCGGGCGGCGCTTCTGGCGGAGGAGCGGATGCTCTCCCTGGGAC AGGGAAGCCCCCCCGTCTACGCACTGCTGGTGACCGGGGACCGGGGGCGCGGGGAGCAGACCCTCTACGGCAAAAACCGC TATCTCCTTTTGCATCAGCTCGATTCGGAGCGCTTTTTCCTCTTCACCCGCCAGCTCGCCACTGCCCTCAAGGAGGCGGG GGTGATCGCGGAGGAGGAGGGGCTTTGGCACGGGTCGCTGGCAGACTGGCGGGCGCTTTTGAAAGGTTCGGGTGCTGCCC GCAAGAGGGACCCGCGCGAGGAGATGGAAAACCCCCTCCCCCCCTTCACCGCTCCGATGAAGGGGGGAAGCCCGTCGATG CCCGAAGGGCAGTGGCGCCTGGAGGCGATGGCCGACCTTTGCTTCGTGACCGGGTACGAACCGTTAGCCGACGAGGCGAT AAACGCCGCTGCGTCATCGCTCAAAGAGCAGAGAAGCCGCGAGGCGTTTTTCCAGCTGGCGCGCAAGGCCATCCACCTCC CGCTGGCACTGGGGCACTTCGGGCGCTGGAGGATTGAGAAAAGCGGAGAGCACAAGGGGGAGATCGACGTGGAAGGGCTC GGCCTCACCCCCCTGGTGAGCGCGGTCCGCGTGCTGGCCATCCACATGGGGGTGCAGGGGGGAGGGACGCTGCACCGGGT GAGGGAGCTTCTCTACCGCGGCCTTTTCAGCGTGGAGTTGGCCGAGAGGGTGCTCGAGGCCCTGCAGTGTCTGATGCAGT TGCGGATACTGAGCGAGATACGCGGCGAGGCGGCAGGGGCGTACGCGAACCCCGAGGAGTTCACCCAGGAGCAGGACGAG AGGATCAGGGCAGCCTTCGAGGCGGTGCTCGACCTGCAGAAGATGGCCTACCAGCGCATGGTGGGACAGGGATAG
Upstream 100 bases:
>100_bases CGCTCGCCACCCCCGCCCCATCGGAGGAGATGGGGCGCTTTCTGGAAAAAGAGGTGCACGGGCACCTCGACTGACAACGT CTTTGTACTGGGAGCCGTAA
Downstream 100 bases:
>100_bases GGCGGCTCTATGCGAATTTCCATCTCGGCAGGAACCCTCTTCACCTTCCCGCTCCCCAAGGCGTTCGCCATGGCGGCCGA AGCAGGTTTCGACGGCGTGG
Product: nucleotidyltransferase
Products: NA
Alternate protein names: Nucleotidyltransferase Family; Signal-Transduction Protein With CBS Domains
Number of amino acids: Translated: 424; Mature: 423
Protein sequence:
>424_residues MAMLLGTKGDDILKWRESARLVEGLKTRLTCKWGRSSAQEAQSFLEGMTEALEAELDYESQLDAELAALHQALRETVAPA GLPPLTARHGELLSAHFSRRGSVLALTGAGNAWHDLLVARAALLAEERMLSLGQGSPPVYALLVTGDRGRGEQTLYGKNR YLLLHQLDSERFFLFTRQLATALKEAGVIAEEEGLWHGSLADWRALLKGSGAARKRDPREEMENPLPPFTAPMKGGSPSM PEGQWRLEAMADLCFVTGYEPLADEAINAAASSLKEQRSREAFFQLARKAIHLPLALGHFGRWRIEKSGEHKGEIDVEGL GLTPLVSAVRVLAIHMGVQGGGTLHRVRELLYRGLFSVELAERVLEALQCLMQLRILSEIRGEAAGAYANPEEFTQEQDE RIRAAFEAVLDLQKMAYQRMVGQG
Sequences:
>Translated_424_residues MAMLLGTKGDDILKWRESARLVEGLKTRLTCKWGRSSAQEAQSFLEGMTEALEAELDYESQLDAELAALHQALRETVAPA GLPPLTARHGELLSAHFSRRGSVLALTGAGNAWHDLLVARAALLAEERMLSLGQGSPPVYALLVTGDRGRGEQTLYGKNR YLLLHQLDSERFFLFTRQLATALKEAGVIAEEEGLWHGSLADWRALLKGSGAARKRDPREEMENPLPPFTAPMKGGSPSM PEGQWRLEAMADLCFVTGYEPLADEAINAAASSLKEQRSREAFFQLARKAIHLPLALGHFGRWRIEKSGEHKGEIDVEGL GLTPLVSAVRVLAIHMGVQGGGTLHRVRELLYRGLFSVELAERVLEALQCLMQLRILSEIRGEAAGAYANPEEFTQEQDE RIRAAFEAVLDLQKMAYQRMVGQG >Mature_423_residues AMLLGTKGDDILKWRESARLVEGLKTRLTCKWGRSSAQEAQSFLEGMTEALEAELDYESQLDAELAALHQALRETVAPAG LPPLTARHGELLSAHFSRRGSVLALTGAGNAWHDLLVARAALLAEERMLSLGQGSPPVYALLVTGDRGRGEQTLYGKNRY LLLHQLDSERFFLFTRQLATALKEAGVIAEEEGLWHGSLADWRALLKGSGAARKRDPREEMENPLPPFTAPMKGGSPSMP EGQWRLEAMADLCFVTGYEPLADEAINAAASSLKEQRSREAFFQLARKAIHLPLALGHFGRWRIEKSGEHKGEIDVEGLG LTPLVSAVRVLAIHMGVQGGGTLHRVRELLYRGLFSVELAERVLEALQCLMQLRILSEIRGEAAGAYANPEEFTQEQDER IRAAFEAVLDLQKMAYQRMVGQG
Specific function: Unknown
COG id: COG2905
COG function: function code T; Predicted signal-transduction protein containing cAMP-binding and CBS domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46728; Mature: 46597
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMLLGTKGDDILKWRESARLVEGLKTRLTCKWGRSSAQEAQSFLEGMTEALEAELDYES CEEEECCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHH QLDAELAALHQALRETVAPAGLPPLTARHGELLSAHFSRRGSVLALTGAGNAWHDLLVAR HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH AALLAEERMLSLGQGSPPVYALLVTGDRGRGEQTLYGKNRYLLLHQLDSERFFLFTRQLA HHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEECCCCEEEEEECCCCHHHHHHHHHH TALKEAGVIAEEEGLWHGSLADWRALLKGSGAARKRDPREEMENPLPPFTAPMKGGSPSM HHHHHCCCEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCC PEGQWRLEAMADLCFVTGYEPLADEAINAAASSLKEQRSREAFFQLARKAIHLPLALGHF CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GRWRIEKSGEHKGEIDVEGLGLTPLVSAVRVLAIHMGVQGGGTLHRVRELLYRGLFSVEL CCEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH AERVLEALQCLMQLRILSEIRGEAAGAYANPEEFTQEQDERIRAAFEAVLDLQKMAYQRM HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGQG HCCC >Mature Secondary Structure AMLLGTKGDDILKWRESARLVEGLKTRLTCKWGRSSAQEAQSFLEGMTEALEAELDYES EEEECCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHH QLDAELAALHQALRETVAPAGLPPLTARHGELLSAHFSRRGSVLALTGAGNAWHDLLVAR HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH AALLAEERMLSLGQGSPPVYALLVTGDRGRGEQTLYGKNRYLLLHQLDSERFFLFTRQLA HHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEECCCCEEEEEECCCCHHHHHHHHHH TALKEAGVIAEEEGLWHGSLADWRALLKGSGAARKRDPREEMENPLPPFTAPMKGGSPSM HHHHHCCCEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCC PEGQWRLEAMADLCFVTGYEPLADEAINAAASSLKEQRSREAFFQLARKAIHLPLALGHF CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GRWRIEKSGEHKGEIDVEGLGLTPLVSAVRVLAIHMGVQGGGTLHRVRELLYRGLFSVEL CCEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH AERVLEALQCLMQLRILSEIRGEAAGAYANPEEFTQEQDERIRAAFEAVLDLQKMAYQRM HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGQG HCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA