| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is bamU
Identifier: 197117822
GI number: 197117822
Start: 1657714
End: 1658562
Strand: Direct
Name: bamU
Synonym: Gbem_1435
Alternate gene names: NA
Gene position: 1657714-1658562 (Clockwise)
Preceding gene: 197117821
Following gene: 197117823
Centisome position: 35.92
GC content: 60.42
Gene sequence:
>849_bases ATGCCGGCAACCGAAGAGAAACCCCTCAGGATCGATTTCCACGTGCACCTCGCCACGTACGACGGTTTCCTGCACCCGTG GGTGGTGGATTGGATGCGGATTGCCCACCCCGTGGGGTACGAGGAGTACGTGGCCCGCTACAGTGACCCGGGCGCCTTCG AGGCACTGCTTCAAGAGGAAGGGGTCGACTACGCCTGCATCCTCGCCGAGCTCACCCCCGTCACCACCGGCATCTGCAGC AACGACTCGGTGCGCGATTTCTGCCACGGCAGGAGGAGTCTGATCCCCTTTTGCGACATAAACCCCTACCTGCACACCGA TCTGGCCGCGGAGTTGCGCCGCAAGGTCGAAAGCGAAGGGTTCCGGGGCATAAAGCTCTACCCAAGCTACCAGCACTACT ACCTGAACGATTCGAGGATGTACCCTCTGTACCGGGCAGCTGAGGAACTCGGCATCCCCGTCCTGATCCATACCGGTTCC TCGGTCTTCAAGGGAACCAGGCTGAAATACGCCAATCCCCTGCATCTGGACGATGTGGCCGTCGACTTCCCCTCGTTGAA TCTGGTCATGGCCCATTCGGGGCGCGGTTTCTGGTATGACCGCGCCTTCTTCTTATCCAAGCTGCATCCAAACGTCTACA TGGAGCTTTCGGGGCTCCCCCCCGCGAAGCTCATGACTTACTTCCCCGAACTGGCTCGCAACACGGGAAAAACCATTTTC GGCAGTGACTGGCCTGGAATGCCGCGCATCCGGCATAACATGGACGCCATAGCAGGGCTGCCGCTGCCGCCGGAAGGTGT TGCGGCGATACTGGGCGGCAACGCGGCCAAACTTTTGAACCTGGGGTGA
Upstream 100 bases:
>100_bases GTAACGCCCGCTACGGCGTGATCTCGCTCTGCATAGGCCTTGGGCAGGGGATCGCCACCGTGGTGGAACGGGTCTGAAAC GGATGTAAGGGGGAGAAACC
Downstream 100 bases:
>100_bases CGCCGCCTCGCGGCAAAGGAGGAGATCGTGTCACTCATCGACGCTCACGGCAGGCGCATCAACTACCTTCGGCTCTCCGT GACCGACCGTTGCAACCTCC
Product: metal-dependent hydrolase
Products: NA
Alternate protein names: Amidohydrolase Family Protein; Metal-Dependent Hydrolase Of TIM-Barrel Fold; Metal-Dependent Hydrolase; TIM-Barrel Fold Metal-Dependent Hydrolase; Amidohydrolase Protein; Antibiotic-Resistance Protein
Number of amino acids: Translated: 282; Mature: 281
Protein sequence:
>282_residues MPATEEKPLRIDFHVHLATYDGFLHPWVVDWMRIAHPVGYEEYVARYSDPGAFEALLQEEGVDYACILAELTPVTTGICS NDSVRDFCHGRRSLIPFCDINPYLHTDLAAELRRKVESEGFRGIKLYPSYQHYYLNDSRMYPLYRAAEELGIPVLIHTGS SVFKGTRLKYANPLHLDDVAVDFPSLNLVMAHSGRGFWYDRAFFLSKLHPNVYMELSGLPPAKLMTYFPELARNTGKTIF GSDWPGMPRIRHNMDAIAGLPLPPEGVAAILGGNAAKLLNLG
Sequences:
>Translated_282_residues MPATEEKPLRIDFHVHLATYDGFLHPWVVDWMRIAHPVGYEEYVARYSDPGAFEALLQEEGVDYACILAELTPVTTGICS NDSVRDFCHGRRSLIPFCDINPYLHTDLAAELRRKVESEGFRGIKLYPSYQHYYLNDSRMYPLYRAAEELGIPVLIHTGS SVFKGTRLKYANPLHLDDVAVDFPSLNLVMAHSGRGFWYDRAFFLSKLHPNVYMELSGLPPAKLMTYFPELARNTGKTIF GSDWPGMPRIRHNMDAIAGLPLPPEGVAAILGGNAAKLLNLG >Mature_281_residues PATEEKPLRIDFHVHLATYDGFLHPWVVDWMRIAHPVGYEEYVARYSDPGAFEALLQEEGVDYACILAELTPVTTGICSN DSVRDFCHGRRSLIPFCDINPYLHTDLAAELRRKVESEGFRGIKLYPSYQHYYLNDSRMYPLYRAAEELGIPVLIHTGSS VFKGTRLKYANPLHLDDVAVDFPSLNLVMAHSGRGFWYDRAFFLSKLHPNVYMELSGLPPAKLMTYFPELARNTGKTIFG SDWPGMPRIRHNMDAIAGLPLPPEGVAAILGGNAAKLLNLG
Specific function: Unknown
COG id: COG2159
COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31729; Mature: 31598
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPATEEKPLRIDFHVHLATYDGFLHPWVVDWMRIAHPVGYEEYVARYSDPGAFEALLQEE CCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHC GVDYACILAELTPVTTGICSNDSVRDFCHGRRSLIPFCDINPYLHTDLAAELRRKVESEG CCCEEEEEEHHHHHHCCCCCCCCHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCC FRGIKLYPSYQHYYLNDSRMYPLYRAAEELGIPVLIHTGSSVFKGTRLKYANPLHLDDVA CCEEEEEECCEEEEECCCCCCHHHHHHHHCCCEEEEECCCHHHCCCEECCCCCCCCCCEE VDFPSLNLVMAHSGRGFWYDRAFFLSKLHPNVYMELSGLPPAKLMTYFPELARNTGKTIF ECCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEE GSDWPGMPRIRHNMDAIAGLPLPPEGVAAILGGNAAKLLNLG CCCCCCCCHHHHCCHHHCCCCCCCCCCEEEECCCCEEEEECC >Mature Secondary Structure PATEEKPLRIDFHVHLATYDGFLHPWVVDWMRIAHPVGYEEYVARYSDPGAFEALLQEE CCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHC GVDYACILAELTPVTTGICSNDSVRDFCHGRRSLIPFCDINPYLHTDLAAELRRKVESEG CCCEEEEEEHHHHHHCCCCCCCCHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCC FRGIKLYPSYQHYYLNDSRMYPLYRAAEELGIPVLIHTGSSVFKGTRLKYANPLHLDDVA CCEEEEEECCEEEEECCCCCCHHHHHHHHCCCEEEEECCCHHHCCCEECCCCCCCCCCEE VDFPSLNLVMAHSGRGFWYDRAFFLSKLHPNVYMELSGLPPAKLMTYFPELARNTGKTIF ECCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEE GSDWPGMPRIRHNMDAIAGLPLPPEGVAAILGGNAAKLLNLG CCCCCCCCHHHHCCHHHCCCCCCCCCCEEEECCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA