BacMap

Definition	Geobacter bemidjiensis Bem chromosome, complete genome.
Accession	NC_011146
Length	4,615,150

Click here to switch to the map view.

The map label for this gene is fabG-3 [H]

Identifier: 197117820

GI number: 197117820

Start: 1655541

End: 1656254

Strand: Direct

Name: fabG-3 [H]

Synonym: Gbem_1433

Alternate gene names: 197117820

Gene position: 1655541-1656254 (Clockwise)

Preceding gene: 197117819

Following gene: 197117821

Centisome position: 35.87

GC content: 66.67

Gene sequence:

>714_bases
ATGAGCAGCTTTCTCAACTTCAACGGACGCACCGCGGTGGTCACCGGCGGTGCGCGCGGCCTGGGCCTTGCCATCACCCG
CGCGCTTTTAAGCCACGGGGCGCGCGTGCACGTCTTCGACGTGGCGCCGGGCGAGGGGGCGGAGGACTACCAGTTCCACA
AGGTGGATATCACCGACCCGGCGAGCGTGGCTGCCGCGGTCGCCGCCATTCCTGAGCCGGTGACCCTCCTGGTGAACAAC
GCGGGGATCACCCGCGACCGCAGCGTCTTCAAGATGTCCGACGATGAGTGGAGCTCCGTCCTCGGGGTGAACCTCACCGG
CGCCTTCAACATGGCGCGGGCTCTCGCCCCCGGGATGAGGGACGCAGGCTACGGTCGCATCGTCAACATCACCTCGATAA
ACGGCATCCGCGGCAAGTTCGGCCAGGCCAACTACTCCGCCTCCAAGGCCGGGCTCATTGGGCTCACCAAGACGCTCGCC
CGCGAGCTGGGCCCCAAAGGGGTAACGGTGAACGCGGTGGCGCCGGGAATGGTCCTGACCGACATGGCGCTGGCGCTTCC
CGAGGAGATCCTGGACCGGGCCAGAAACGAGTGCCTGCTCCCGGAATTGGCGAAACCCGAGGACATCGCCAACGCGGTCA
CCTTCCTCCTCTCCGATGCGGCGGGGAAGATCACCGGCGAGGTGATCCGGGTCGATTCCGGCCAGTACATCTGA

Upstream 100 bases:

>100_bases
GAACTCGTCTCCCGACCCTGGGAGTAAGGGGGGCTGCCGTTCTATCACCCGCGGCAGTCCCCCAGAGTCCAAACCATAGT
TAGAGCCGACAGGGGGGCAC

Downstream 100 bases:

>100_bases
CGAAAAAGGGGACAGGCTACTTTTTGAAATCAAAAAGTAGCCTGTCCCCCTTAACCCCCAATGCGGCGGGGAAACCCGCC
GGAGAGGGATCTTGAGCGAT

Product: 3-oxoacyl-(acyl carrier protein) reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MSSFLNFNGRTAVVTGGARGLGLAITRALLSHGARVHVFDVAPGEGAEDYQFHKVDITDPASVAAAVAAIPEPVTLLVNN
AGITRDRSVFKMSDDEWSSVLGVNLTGAFNMARALAPGMRDAGYGRIVNITSINGIRGKFGQANYSASKAGLIGLTKTLA
RELGPKGVTVNAVAPGMVLTDMALALPEEILDRARNECLLPELAKPEDIANAVTFLLSDAAGKITGEVIRVDSGQYI

Sequences:

>Translated_237_residues
MSSFLNFNGRTAVVTGGARGLGLAITRALLSHGARVHVFDVAPGEGAEDYQFHKVDITDPASVAAAVAAIPEPVTLLVNN
AGITRDRSVFKMSDDEWSSVLGVNLTGAFNMARALAPGMRDAGYGRIVNITSINGIRGKFGQANYSASKAGLIGLTKTLA
RELGPKGVTVNAVAPGMVLTDMALALPEEILDRARNECLLPELAKPEDIANAVTFLLSDAAGKITGEVIRVDSGQYI
>Mature_236_residues
SSFLNFNGRTAVVTGGARGLGLAITRALLSHGARVHVFDVAPGEGAEDYQFHKVDITDPASVAAAVAAIPEPVTLLVNNA
GITRDRSVFKMSDDEWSSVLGVNLTGAFNMARALAPGMRDAGYGRIVNITSINGIRGKFGQANYSASKAGLIGLTKTLAR
ELGPKGVTVNAVAPGMVLTDMALALPEEILDRARNECLLPELAKPEDIANAVTFLLSDAAGKITGEVIRVDSGQYI

Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI15277342, Length=261, Percent_Identity=35.632183908046, Blast_Score=144, Evalue=9e-35,
Organism=Homo sapiens, GI4504505, Length=240, Percent_Identity=33.75, Blast_Score=113, Evalue=1e-25,
Organism=Homo sapiens, GI40254992, Length=235, Percent_Identity=34.468085106383, Blast_Score=113, Evalue=1e-25,
Organism=Homo sapiens, GI4758504, Length=251, Percent_Identity=33.4661354581673, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI32483357, Length=241, Percent_Identity=31.9502074688797, Blast_Score=101, Evalue=7e-22,
Organism=Homo sapiens, GI7705925, Length=244, Percent_Identity=31.5573770491803, Blast_Score=94, Evalue=7e-20,
Organism=Homo sapiens, GI83715985, Length=249, Percent_Identity=32.1285140562249, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI19923817, Length=254, Percent_Identity=30.7086614173228, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI5031737, Length=241, Percent_Identity=30.7053941908714, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI66933014, Length=243, Percent_Identity=28.3950617283951, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI126723750, Length=149, Percent_Identity=31.5436241610738, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI10190704, Length=246, Percent_Identity=29.2682926829268, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI109715829, Length=247, Percent_Identity=27.1255060728745, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI31542939, Length=261, Percent_Identity=26.4367816091954, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI223718074, Length=144, Percent_Identity=37.5, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI7657478, Length=187, Percent_Identity=27.807486631016, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI150247226, Length=210, Percent_Identity=30, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=31.413612565445, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI166795268, Length=208, Percent_Identity=29.3269230769231, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI186928839, Length=225, Percent_Identity=28.4444444444444, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=42.2764227642276, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=33.9920948616601, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=33.4677419354839, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1786812, Length=245, Percent_Identity=35.1020408163265, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1790717, Length=256, Percent_Identity=28.90625, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789208, Length=254, Percent_Identity=31.496062992126, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=31.8367346938775, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=31.0483870967742, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI2367365, Length=235, Percent_Identity=30.6382978723404, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1789057, Length=255, Percent_Identity=30.5882352941176, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788459, Length=162, Percent_Identity=35.1851851851852, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787820, Length=181, Percent_Identity=29.2817679558011, Blast_Score=69, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=39.5161290322581, Blast_Score=163, Evalue=9e-41,
Organism=Caenorhabditis elegans, GI17555706, Length=243, Percent_Identity=39.5061728395062, Blast_Score=158, Evalue=2e-39,
Organism=Caenorhabditis elegans, GI17568967, Length=257, Percent_Identity=31.5175097276265, Blast_Score=110, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=30.0395256916996, Blast_Score=100, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17560676, Length=246, Percent_Identity=28.4552845528455, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI115534694, Length=251, Percent_Identity=31.0756972111554, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17538182, Length=255, Percent_Identity=29.0196078431373, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI71994600, Length=167, Percent_Identity=31.1377245508982, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=167, Percent_Identity=31.7365269461078, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=30.5660377358491, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17567345, Length=202, Percent_Identity=29.2079207920792, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193203117, Length=193, Percent_Identity=29.0155440414508, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193203115, Length=189, Percent_Identity=29.6296296296296, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=191, Percent_Identity=27.7486910994764, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17536651, Length=256, Percent_Identity=31.25, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=27.4809160305344, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17561272, Length=194, Percent_Identity=28.3505154639175, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=266, Percent_Identity=27.4436090225564, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=258, Percent_Identity=26.7441860465116, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=29.1666666666667, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=26.8199233716475, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=190, Percent_Identity=26.8421052631579, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=26.4367816091954, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17536025, Length=253, Percent_Identity=28.8537549407115, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=269, Percent_Identity=26.7657992565056, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=25.7575757575758, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=221, Percent_Identity=37.5565610859729, Blast_Score=121, Evalue=8e-29,
Organism=Saccharomyces cerevisiae, GI6324126, Length=249, Percent_Identity=27.710843373494, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6320089, Length=192, Percent_Identity=28.125, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24639444, Length=240, Percent_Identity=35.8333333333333, Blast_Score=134, Evalue=7e-32,
Organism=Drosophila melanogaster, GI18859837, Length=256, Percent_Identity=35.15625, Blast_Score=114, Evalue=4e-26,
Organism=Drosophila melanogaster, GI17737361, Length=245, Percent_Identity=32.2448979591837, Blast_Score=104, Evalue=6e-23,
Organism=Drosophila melanogaster, GI24643142, Length=243, Percent_Identity=30.0411522633745, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI23397609, Length=247, Percent_Identity=30.3643724696356, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI21355319, Length=240, Percent_Identity=30.8333333333333, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24644339, Length=256, Percent_Identity=28.125, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI21357041, Length=185, Percent_Identity=32.4324324324324, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI28571526, Length=257, Percent_Identity=29.5719844357977, Blast_Score=87, Evalue=6e-18,
Organism=Drosophila melanogaster, GI221331218, Length=205, Percent_Identity=31.7073170731707, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24665243, Length=205, Percent_Identity=31.7073170731707, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24649181, Length=191, Percent_Identity=31.413612565445, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI221331216, Length=206, Percent_Identity=31.5533980582524, Blast_Score=77, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24665247, Length=206, Percent_Identity=31.5533980582524, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24644337, Length=168, Percent_Identity=32.1428571428571, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21356301, Length=242, Percent_Identity=29.3388429752066, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24581726, Length=184, Percent_Identity=24.4565217391304, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21358495, Length=197, Percent_Identity=28.4263959390863, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI116007236, Length=236, Percent_Identity=29.2372881355932, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24656154, Length=209, Percent_Identity=32.5358851674641, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI19922628, Length=209, Percent_Identity=32.5358851674641, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21355631, Length=172, Percent_Identity=27.3255813953488, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011283
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.36 [H]

Molecular weight: Translated: 24778; Mature: 24646

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSFLNFNGRTAVVTGGARGLGLAITRALLSHGARVHVFDVAPGEGAEDYQFHKVDITDP
CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEECCCH
ASVAAAVAAIPEPVTLLVNNAGITRDRSVFKMSDDEWSSVLGVNLTGAFNMARALAPGMR
HHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCHHHEEEEEECCHHHHHHHHCCCCC
DAGYGRIVNITSINGIRGKFGQANYSASKAGLIGLTKTLARELGPKGVTVNAVAPGMVLT
CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHH
DMALALPEEILDRARNECLLPELAKPEDIANAVTFLLSDAAGKITGEVIRVDSGQYI
HHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
>Mature Secondary Structure 
SSFLNFNGRTAVVTGGARGLGLAITRALLSHGARVHVFDVAPGEGAEDYQFHKVDITDP
CCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEECCCH
ASVAAAVAAIPEPVTLLVNNAGITRDRSVFKMSDDEWSSVLGVNLTGAFNMARALAPGMR
HHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCHHHEEEEEECCHHHHHHHHCCCCC
DAGYGRIVNITSINGIRGKFGQANYSASKAGLIGLTKTLARELGPKGVTVNAVAPGMVLT
CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHH
DMALALPEEILDRARNECLLPELAKPEDIANAVTFLLSDAAGKITGEVIRVDSGQYI
HHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7582015; 11481430 [H]