| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is bamR [H]
Identifier: 197117819
GI number: 197117819
Start: 1654628
End: 1655434
Strand: Direct
Name: bamR [H]
Synonym: Gbem_1432
Alternate gene names: 197117819
Gene position: 1654628-1655434 (Clockwise)
Preceding gene: 197117818
Following gene: 197117820
Centisome position: 35.85
GC content: 65.92
Gene sequence:
>807_bases ATGAGCCAAGCCGCTACCCAAGCACCGCAAACCGCCGCAGCCGACTCGCCGCTCAAGGTGTCTCTTGAGCGCGACGGCCG CCTTTTGAAACTCACCCTCGCTCGTCCGAAGGCGAACATCGTCGACGCGGCCATGATCGGGGCGCTCCTGCAGGCGCTGG ACCAGCACCTGAAAGAACCCCGCCTGAGGGGGGTGCTGCTCACCGCGGAGGGGCCGCATTTCAGCTTCGGCGCCAGCGTG GACGAGCATATGCCCGACTCCTGCGCCCAGATGCTGAAGTCGCTGCATGCGCTTGTGCTGAAGCTCGTCGAGAGCCCGGT CCCAGTGCTGGTTGCGGTGCGCGGCCAGTGCCTGGGGGGCGGCCTCGAAGTAGTCGCCGCCTGCAACCTGATCTTCGCGG CACCCAACGCGCAGCTGGGGCAGCCGGAGATAAAGCTCGCCGTTTTCGCCCCTGCCGCTTCTTGCCTCTTACCTGAGCGG ATCGGGCAGGCCCAGGCGGAGGACCTCCTCTTCTCTGGACGCAGCGTGAGCGCCGAGGAGGCGCATCTCATGGGGCTCGT ATCGGTCATCGCCGAGGACCCGGACCAGGCGGCCCTGGATTACTTCGACAAGCACCTGGCCCCGGTTTCCGCCAGCACGC TGCGTTACGCGGTGCGCGCGGCCCGGCAGGACAAGGCCTCAAGGATCAGGGCCAAGATCTCCTTCGTCGAGAAGCTCTAC CTCGAGGAGATGATGAAGACTCACGACTCGGTGGAAGGCCTCACCGCCTTCATCGAAAAGCGGCAGCCTACCTGGCAGGA CCGCTAG
Upstream 100 bases:
>100_bases GCATCCCCTGGACAACATCAACCAGGTGTTTGCCTCCGCACATGCCCACAAGCTCACCAGGCGCGCCATCTTAGTGCCGG GTCTTTCCTAGGAGGACGCC
Downstream 100 bases:
>100_bases TCCAACGAACTCGTCTCCCGACCCTGGGAGTAAGGGGGGCTGCCGTTCTATCACCCGCGGCAGTCCCCCAGAGTCCAAAC CATAGTTAGAGCCGACAGGG
Product: cyclohexa-1,5-dienecarbonyl-CoA hydratase
Products: NA
Alternate protein names: Cyclohexa-1,5-diene-1-carboxyl-CoA hydratase; Dienoyl-CoA hydratase [H]
Number of amino acids: Translated: 268; Mature: 267
Protein sequence:
>268_residues MSQAATQAPQTAAADSPLKVSLERDGRLLKLTLARPKANIVDAAMIGALLQALDQHLKEPRLRGVLLTAEGPHFSFGASV DEHMPDSCAQMLKSLHALVLKLVESPVPVLVAVRGQCLGGGLEVVAACNLIFAAPNAQLGQPEIKLAVFAPAASCLLPER IGQAQAEDLLFSGRSVSAEEAHLMGLVSVIAEDPDQAALDYFDKHLAPVSASTLRYAVRAARQDKASRIRAKISFVEKLY LEEMMKTHDSVEGLTAFIEKRQPTWQDR
Sequences:
>Translated_268_residues MSQAATQAPQTAAADSPLKVSLERDGRLLKLTLARPKANIVDAAMIGALLQALDQHLKEPRLRGVLLTAEGPHFSFGASV DEHMPDSCAQMLKSLHALVLKLVESPVPVLVAVRGQCLGGGLEVVAACNLIFAAPNAQLGQPEIKLAVFAPAASCLLPER IGQAQAEDLLFSGRSVSAEEAHLMGLVSVIAEDPDQAALDYFDKHLAPVSASTLRYAVRAARQDKASRIRAKISFVEKLY LEEMMKTHDSVEGLTAFIEKRQPTWQDR >Mature_267_residues SQAATQAPQTAAADSPLKVSLERDGRLLKLTLARPKANIVDAAMIGALLQALDQHLKEPRLRGVLLTAEGPHFSFGASVD EHMPDSCAQMLKSLHALVLKLVESPVPVLVAVRGQCLGGGLEVVAACNLIFAAPNAQLGQPEIKLAVFAPAASCLLPERI GQAQAEDLLFSGRSVSAEEAHLMGLVSVIAEDPDQAALDYFDKHLAPVSASTLRYAVRAARQDKASRIRAKISFVEKLYL EEMMKTHDSVEGLTAFIEKRQPTWQDR
Specific function: Catalyzes the hydration of cyclohexa-1,5-diene-1- carboxyl-CoA [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]
Homologues:
Organism=Homo sapiens, GI31542718, Length=259, Percent_Identity=25.4826254826255, Blast_Score=89, Evalue=6e-18, Organism=Homo sapiens, GI194097323, Length=250, Percent_Identity=30, Blast_Score=89, Evalue=6e-18, Organism=Homo sapiens, GI4502327, Length=238, Percent_Identity=28.9915966386555, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI20127408, Length=203, Percent_Identity=25.615763546798, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI70995211, Length=256, Percent_Identity=23.828125, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI68989263, Length=173, Percent_Identity=26.5895953757225, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI221142681, Length=264, Percent_Identity=30.6818181818182, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1787659, Length=253, Percent_Identity=29.2490118577075, Blast_Score=95, Evalue=6e-21, Organism=Escherichia coli, GI1790281, Length=216, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1788682, Length=155, Percent_Identity=30.3225806451613, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1787660, Length=246, Percent_Identity=26.8292682926829, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17554946, Length=255, Percent_Identity=29.0196078431373, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI25145438, Length=257, Percent_Identity=27.6264591439689, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17540306, Length=287, Percent_Identity=23.6933797909408, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17536985, Length=295, Percent_Identity=20.6779661016949, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17540714, Length=209, Percent_Identity=25.8373205741627, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17558304, Length=184, Percent_Identity=24.4565217391304, Blast_Score=64, Evalue=8e-11, Organism=Drosophila melanogaster, GI24653139, Length=251, Percent_Identity=29.4820717131474, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI20129971, Length=273, Percent_Identity=27.1062271062271, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI24653477, Length=273, Percent_Identity=27.1062271062271, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI19922422, Length=265, Percent_Identity=27.5471698113208, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI19920382, Length=186, Percent_Identity=27.9569892473118, Blast_Score=71, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001753 - InterPro: IPR017602 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: =4.2.1.100 [H]
Molecular weight: Translated: 28863; Mature: 28732
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQAATQAPQTAAADSPLKVSLERDGRLLKLTLARPKANIVDAAMIGALLQALDQHLKEP CCCCHHCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC RLRGVLLTAEGPHFSFGASVDEHMPDSCAQMLKSLHALVLKLVESPVPVLVAVRGQCLGG CCCEEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHCCC GLEVVAACNLIFAAPNAQLGQPEIKLAVFAPAASCLLPERIGQAQAEDLLFSGRSVSAEE HHHHHHHHHHHEECCCCCCCCCCEEEEEECCHHHHHHHHHHCHHHHHHHHHCCCCCCHHH AHLMGLVSVIAEDPDQAALDYFDKHLAPVSASTLRYAVRAARQDKASRIRAKISFVEKLY HHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LEEMMKTHDSVEGLTAFIEKRQPTWQDR HHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SQAATQAPQTAAADSPLKVSLERDGRLLKLTLARPKANIVDAAMIGALLQALDQHLKEP CCCHHCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC RLRGVLLTAEGPHFSFGASVDEHMPDSCAQMLKSLHALVLKLVESPVPVLVAVRGQCLGG CCCEEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHCCC GLEVVAACNLIFAAPNAQLGQPEIKLAVFAPAASCLLPERIGQAQAEDLLFSGRSVSAEE HHHHHHHHHHHEECCCCCCCCCCEEEEEECCHHHHHHHHHHCHHHHHHHHHCCCCCCHHH AHLMGLVSVIAEDPDQAALDYFDKHLAPVSASTLRYAVRAARQDKASRIRAKISFVEKLY HHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LEEMMKTHDSVEGLTAFIEKRQPTWQDR HHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9746358; 9738901 [H]