| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117816
Identifier: 197117816
GI number: 197117816
Start: 1648138
End: 1649463
Strand: Reverse
Name: 197117816
Synonym: Gbem_1428
Alternate gene names: NA
Gene position: 1649463-1648138 (Counterclockwise)
Preceding gene: 197117827
Following gene: 197117815
Centisome position: 35.74
GC content: 63.35
Gene sequence:
>1326_bases ATGCTCAAAAAGGTATGTCTCATTCTCGCCGCCTCGCTGCTCGCAACCACCGCGTCGGCCCAGGAAGTCGCCCCCAACGC TCCCGAACCCTACAACTGCGACTTCGACCCGGCCTGCGAAGTGGCCCCTGGCCTCTACGGGAAGATGTCCTCGCCGGTCA CCAGCAAGTTCAAGCTCTCCCTGGGCGGTTTCGTCAAGCTGGACTACGTCTACAACTCGGTGAACCTCGGCAGTAACGGC GCCCTGGGGACCCTGCAACCGAACGGGATTCCCAAGAAGGGGTCGGTGGCGGACCAGCAGGACCAGTCCCTGTTCACCGC GCGCCAGTCGCGCCTGTGGTTCAAGGTCGCCGGCCCCACCTTCAAAGGGGCGAAGACCGGCGCAGTGATCGAGACCGACT TTTACGGCTCCGGCGGCAGCAACGAGTCCGCCAACATGAGGATGCGCCATGCCTACGGCACCCTGGACTGGGAGAACACC CAGCTCCTCTTCGGCCAGTACTGGGACAACTTCGGGATGGCCAACTCCTCGACGCTCGATTTCGGCCTGGGTGCCACGGC CGGGAATCCGCAACAGCCGCGCGTGGCCCAGATAAGGGTCACCCAGAAAGTGCCGCTGACGAAAGATGAGACCATGAAAC TGAGCCTCTCTCTCCAGAACCCGGTTCAGGACACGAACCAGCAAAACGGCTCGGCCACCGACACCTGGGGGAGCGCGGTC AATGTTGCCGGGCAGGCGGTGCTAGTATCCAAGGCGCTGGGTGTCGCCCCCGGTTTGTGGGGACTGTCCATGAACTCGCT GCAGGCCGGCTTCTTCGGCCTGTACGGTACCGAGAGCGCGGGGCCGACCGGCAAGGAGCTTGCTTCCTGGGGCTACGGGT TTTACACCTTCGTTCCCGTCTTGGCCTCCAAGGACGGCAAGAGCCGCGCCATGACGGCGGGCTTCGAAGGGCAGGCTTAC CAGGCCAGCAACATGTCCTTCAACTACGCGACCGCCACCGCCCTCGTCGGGCCGAGCAACGACCGGACCGGAGCCAAGGG GTACGGCCTCTTCGCCCAGGGGATGTTCTACCCGACCCAGAACCTGGGGCTCACCGCCGGCTACGGCAAAAGAGCCGCGT ACGACCAGGCGAGCTACGCGGGAATAGCGAATTACCAGCAGTCGAGTTCGCAGATCTTCGCCAACGTAAGTTACGACATC AACGCCGCCATCAGGTTCGCGGCCGAGTACCAGAAGCTTGAGACCAAGTACGGCAACAACACCCCCAGCAGCTCCGACCA GGGCTCGGCCGACGTGTTCCGGTTCTCGGCTTTCTACTTCTTCTAG
Upstream 100 bases:
>100_bases GCAGCAGCAGGCCGCCTGATTCCGGCACCCGCCCCCACCCCCTGCCCCCCTCTCGCATGGGGAGGGGGGACACAACACTG CAATGAAAAGGAGGGTTTCA
Downstream 100 bases:
>100_bases AAAAGTCCACCTTTGCGAAGGTTCTTCCGGGAATTCCGTGGAGAAGAGTCCCCCCCTCCCTTGACGGGAGGGGGGACCAA GAGCGGCTTTCCCCGGTATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 441; Mature: 441
Protein sequence:
>441_residues MLKKVCLILAASLLATTASAQEVAPNAPEPYNCDFDPACEVAPGLYGKMSSPVTSKFKLSLGGFVKLDYVYNSVNLGSNG ALGTLQPNGIPKKGSVADQQDQSLFTARQSRLWFKVAGPTFKGAKTGAVIETDFYGSGGSNESANMRMRHAYGTLDWENT QLLFGQYWDNFGMANSSTLDFGLGATAGNPQQPRVAQIRVTQKVPLTKDETMKLSLSLQNPVQDTNQQNGSATDTWGSAV NVAGQAVLVSKALGVAPGLWGLSMNSLQAGFFGLYGTESAGPTGKELASWGYGFYTFVPVLASKDGKSRAMTAGFEGQAY QASNMSFNYATATALVGPSNDRTGAKGYGLFAQGMFYPTQNLGLTAGYGKRAAYDQASYAGIANYQQSSSQIFANVSYDI NAAIRFAAEYQKLETKYGNNTPSSSDQGSADVFRFSAFYFF
Sequences:
>Translated_441_residues MLKKVCLILAASLLATTASAQEVAPNAPEPYNCDFDPACEVAPGLYGKMSSPVTSKFKLSLGGFVKLDYVYNSVNLGSNG ALGTLQPNGIPKKGSVADQQDQSLFTARQSRLWFKVAGPTFKGAKTGAVIETDFYGSGGSNESANMRMRHAYGTLDWENT QLLFGQYWDNFGMANSSTLDFGLGATAGNPQQPRVAQIRVTQKVPLTKDETMKLSLSLQNPVQDTNQQNGSATDTWGSAV NVAGQAVLVSKALGVAPGLWGLSMNSLQAGFFGLYGTESAGPTGKELASWGYGFYTFVPVLASKDGKSRAMTAGFEGQAY QASNMSFNYATATALVGPSNDRTGAKGYGLFAQGMFYPTQNLGLTAGYGKRAAYDQASYAGIANYQQSSSQIFANVSYDI NAAIRFAAEYQKLETKYGNNTPSSSDQGSADVFRFSAFYFF >Mature_441_residues MLKKVCLILAASLLATTASAQEVAPNAPEPYNCDFDPACEVAPGLYGKMSSPVTSKFKLSLGGFVKLDYVYNSVNLGSNG ALGTLQPNGIPKKGSVADQQDQSLFTARQSRLWFKVAGPTFKGAKTGAVIETDFYGSGGSNESANMRMRHAYGTLDWENT QLLFGQYWDNFGMANSSTLDFGLGATAGNPQQPRVAQIRVTQKVPLTKDETMKLSLSLQNPVQDTNQQNGSATDTWGSAV NVAGQAVLVSKALGVAPGLWGLSMNSLQAGFFGLYGTESAGPTGKELASWGYGFYTFVPVLASKDGKSRAMTAGFEGQAY QASNMSFNYATATALVGPSNDRTGAKGYGLFAQGMFYPTQNLGLTAGYGKRAAYDQASYAGIANYQQSSSQIFANVSYDI NAAIRFAAEYQKLETKYGNNTPSSSDQGSADVFRFSAFYFF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47001; Mature: 47001
Theoretical pI: Translated: 8.61; Mature: 8.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKKVCLILAASLLATTASAQEVAPNAPEPYNCDFDPACEVAPGLYGKMSSPVTSKFKLS CHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE LGGFVKLDYVYNSVNLGSNGALGTLQPNGIPKKGSVADQQDQSLFTARQSRLWFKVAGPT CCCEEEEEEEEEEEECCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHEEEEEECCCC FKGAKTGAVIETDFYGSGGSNESANMRMRHAYGTLDWENTQLLFGQYWDNFGMANSSTLD CCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEHHCCCCCCCCCCEE FGLGATAGNPQQPRVAQIRVTQKVPLTKDETMKLSLSLQNPVQDTNQQNGSATDTWGSAV CCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHH NVAGQAVLVSKALGVAPGLWGLSMNSLQAGFFGLYGTESAGPTGKELASWGYGFYTFVPV HHCCCEEEEHHHHCCCCCCCCCCHHHHCCCEEEEECCCCCCCCHHHHHHCCCCHHHHHHH LASKDGKSRAMTAGFEGQAYQASNMSFNYATATALVGPSNDRTGAKGYGLFAQGMFYPTQ HHCCCCCCCEEEECCCCCEEEECCCEEEEEEEEEEECCCCCCCCCCCCCEEECCEECCCC NLGLTAGYGKRAAYDQASYAGIANYQQSSSQIFANVSYDINAAIRFAAEYQKLETKYGNN CCCEECCCCCCCCCCCCHHCCHHCCCCCCCEEEEEEEECCCEEEHHHHHHHHHHHHCCCC TPSSSDQGSADVFRFSAFYFF CCCCCCCCCCCEEEEEEEEEC >Mature Secondary Structure MLKKVCLILAASLLATTASAQEVAPNAPEPYNCDFDPACEVAPGLYGKMSSPVTSKFKLS CHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE LGGFVKLDYVYNSVNLGSNGALGTLQPNGIPKKGSVADQQDQSLFTARQSRLWFKVAGPT CCCEEEEEEEEEEEECCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHEEEEEECCCC FKGAKTGAVIETDFYGSGGSNESANMRMRHAYGTLDWENTQLLFGQYWDNFGMANSSTLD CCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEHHCCCCCCCCCCEE FGLGATAGNPQQPRVAQIRVTQKVPLTKDETMKLSLSLQNPVQDTNQQNGSATDTWGSAV CCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHH NVAGQAVLVSKALGVAPGLWGLSMNSLQAGFFGLYGTESAGPTGKELASWGYGFYTFVPV HHCCCEEEEHHHHCCCCCCCCCCHHHHCCCEEEEECCCCCCCCHHHHHHCCCCHHHHHHH LASKDGKSRAMTAGFEGQAYQASNMSFNYATATALVGPSNDRTGAKGYGLFAQGMFYPTQ HHCCCCCCCEEEECCCCCEEEECCCEEEEEEEEEEECCCCCCCCCCCCCEEECCEECCCC NLGLTAGYGKRAAYDQASYAGIANYQQSSSQIFANVSYDINAAIRFAAEYQKLETKYGNN CCCEECCCCCCCCCCCCHHCCHHCCCCCCCEEEEEEEECCCEEEHHHHHHHHHHHHCCCC TPSSSDQGSADVFRFSAFYFF CCCCCCCCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA