Click here to switch to the map view.

The map label for this gene is 197117716

Identifier: 197117716

GI number: 197117716

Start: 1531710

End: 1532945

Strand: Reverse

Name: 197117716

Synonym: Gbem_1328

Alternate gene names: NA

Gene position: 1532945-1531710 (Counterclockwise)

Preceding gene: 197117717

Following gene: 197117712

Centisome position: 33.22

GC content: 66.5

Gene sequence:

>1236_bases
GTGACCTTCATCGCAGACCTGCACATCCATTCCCGCTTTTCCATCGCCACAAGCCGCGACCTCGACCTGGCCTCCCTCTG
GCACTGGGGACAGTTGAAGGGGATCCGCGTGGTCGGTACCGGAGACTGCACCCACCCCGTGTGGCTTGGGGAGTTGGAGC
GGGACCTGGTGGCAACCGAGTCCGGTTTGTTCCGGCTGCGCCACGCCCCGCCGCAGCACCTGGTTCCCGCCAACTGCCGC
GCCGAGGTCCTCTTCATGCCGACCGCCGAAATCAGCTGCATTTACCGCAAGGGGGGGCGCACCAGGAAGGTGCACTGCCT
GGTCCTGCTCCCGGACCTGCAGGCGGCGCACCGGCTCAACCTGCTCCTTTCCCGCATCGGCAACCTGGGCTCCGACGGCC
GGCCCATCCTGAAACTCGACGCGAAGGAGCTGTTGCAGATGGTGCTGGACGCGGCTCCCGAGGCGCTGCTGATCCCGGCG
CACGCCTGGACCCCGCACTTCTCGGTGTTCGGCTCCGGCTCCGGCTTCGACTCGCTTGCCGAGTGCTTCGAGGAACTCAC
CCCGCACGTGCACGCCATCGAGACCGGACTTTCCTCCGACCCGGCCATGAACTGGCGCATATCGGCCCTAGACGGCATCA
CGCTCATCTCCAACTCCGACGCGCACTCCGCGGCCAAGCTCGGGCGGGAGGCGACGGTGTTTCGGACCGACCCCTCCTAC
CGCGGGATCCGGCAGGGGATAATTGAGGGAAACGGGGTGGCATCGACCATCGAGTTCTTCCCGGAGCAGGGGAAGTACCA
CGCGGACGGCCACCGCTGTTGCGGGGTCCGCCTCACCCCTGCGCAGACTATTGCAAACGGCTACCGCTGCCCTGCCTGCG
GCGCCAAGGTGACGGTCGGGGTGCTGCACAGGCTGGAGCTGCTGGCGGACCGGCCGGAAGGGGCAAGACCGGAAAACGCC
CCCCCGTTCCAGTCGCTGATACCGCTTCTGGATCTGATCGGGGGGGCGCTTAAGGTGGGGACGGGGACGAAAAAGGCTCA
GGCGCTTTACTTCCACCTGCTGGAGCTGATCGGCAACGAGTTCCACATACTGAGAGATGCGCCGGTGGGGTTGATAGAGG
AGGCTGCCGGCGCCACGCTGGCGCGCGGCATCGGCAAGATGCGCCTGGGCGAGGTGGAGATCGATCCCGGTTACGACGGC
AGGTTCGGGATCGTCTCCATCTCCCCTTTGGCGTGA

Upstream 100 bases:

>100_bases
CATCGTCCAGCGGCGACGCCCCTTTTCCTTCTTATCTACCCGACTCCCCCCTCACCCCAGTTGTCATCCAAGCCGCCTCA
GGCGTGAGCGCGAAACTGCC

Downstream 100 bases:

>100_bases
AGAAGGTTATTTCAAAAGCTCATCCAGCTTCTTGGTGTCGGCGCCGATGACCTGCTCCCCCTTGACGAAGAAGGTCGGGG
TCCCCTGGATACCCACCTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MTFIADLHIHSRFSIATSRDLDLASLWHWGQLKGIRVVGTGDCTHPVWLGELERDLVATESGLFRLRHAPPQHLVPANCR
AEVLFMPTAEISCIYRKGGRTRKVHCLVLLPDLQAAHRLNLLLSRIGNLGSDGRPILKLDAKELLQMVLDAAPEALLIPA
HAWTPHFSVFGSGSGFDSLAECFEELTPHVHAIETGLSSDPAMNWRISALDGITLISNSDAHSAAKLGREATVFRTDPSY
RGIRQGIIEGNGVASTIEFFPEQGKYHADGHRCCGVRLTPAQTIANGYRCPACGAKVTVGVLHRLELLADRPEGARPENA
PPFQSLIPLLDLIGGALKVGTGTKKAQALYFHLLELIGNEFHILRDAPVGLIEEAAGATLARGIGKMRLGEVEIDPGYDG
RFGIVSISPLA

Sequences:

>Translated_411_residues
MTFIADLHIHSRFSIATSRDLDLASLWHWGQLKGIRVVGTGDCTHPVWLGELERDLVATESGLFRLRHAPPQHLVPANCR
AEVLFMPTAEISCIYRKGGRTRKVHCLVLLPDLQAAHRLNLLLSRIGNLGSDGRPILKLDAKELLQMVLDAAPEALLIPA
HAWTPHFSVFGSGSGFDSLAECFEELTPHVHAIETGLSSDPAMNWRISALDGITLISNSDAHSAAKLGREATVFRTDPSY
RGIRQGIIEGNGVASTIEFFPEQGKYHADGHRCCGVRLTPAQTIANGYRCPACGAKVTVGVLHRLELLADRPEGARPENA
PPFQSLIPLLDLIGGALKVGTGTKKAQALYFHLLELIGNEFHILRDAPVGLIEEAAGATLARGIGKMRLGEVEIDPGYDG
RFGIVSISPLA
>Mature_410_residues
TFIADLHIHSRFSIATSRDLDLASLWHWGQLKGIRVVGTGDCTHPVWLGELERDLVATESGLFRLRHAPPQHLVPANCRA
EVLFMPTAEISCIYRKGGRTRKVHCLVLLPDLQAAHRLNLLLSRIGNLGSDGRPILKLDAKELLQMVLDAAPEALLIPAH
AWTPHFSVFGSGSGFDSLAECFEELTPHVHAIETGLSSDPAMNWRISALDGITLISNSDAHSAAKLGREATVFRTDPSYR
GIRQGIIEGNGVASTIEFFPEQGKYHADGHRCCGVRLTPAQTIANGYRCPACGAKVTVGVLHRLELLADRPEGARPENAP
PFQSLIPLLDLIGGALKVGTGTKKAQALYFHLLELIGNEFHILRDAPVGLIEEAAGATLARGIGKMRLGEVEIDPGYDGR
FGIVSISPLA

Specific function: Unknown

COG id: COG1379

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DOD-type homing endonuclease domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005287
- InterPro:   IPR003586
- InterPro:   IPR003587
- InterPro:   IPR006142
- InterPro:   IPR004042
- InterPro:   IPR006141
- InterPro:   IPR003141
- InterPro:   IPR016195 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44496; Mature: 44365

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFIADLHIHSRFSIATSRDLDLASLWHWGQLKGIRVVGTGDCTHPVWLGELERDLVATE
CCEEEEEEEECEEEEECCCCCCHHHHHCCCCCCCEEEEECCCCCCCEEHHHHHHHHHHCC
SGLFRLRHAPPQHLVPANCRAEVLFMPTAEISCIYRKGGRTRKVHCLVLLPDLQAAHRLN
CCCEEECCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEECCCHHHHHHH
LLLSRIGNLGSDGRPILKLDAKELLQMVLDAAPEALLIPAHAWTPHFSVFGSGSGFDSLA
HHHHHHCCCCCCCCEEEEECHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCHHHHH
ECFEELTPHVHAIETGLSSDPAMNWRISALDGITLISNSDAHSAAKLGREATVFRTDPSY
HHHHHHCCCCEEHHCCCCCCCCCCEEEEEECCEEEEECCCCHHHHHCCCCEEEEECCCCH
RGIRQGIIEGNGVASTIEFFPEQGKYHADGHRCCGVRLTPAQTIANGYRCPACGAKVTVG
HHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEECHHHHHHCCCCCCCCCCHHHHH
VLHRLELLADRPEGARPENAPPFQSLIPLLDLIGGALKVGTGTKKAQALYFHLLELIGNE
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCC
FHILRDAPVGLIEEAAGATLARGIGKMRLGEVEIDPGYDGRFGIVSISPLA
EEEEECCCCHHHHHHHCHHHHHCCCCEEECEEEECCCCCCCEEEEEECCCC
>Mature Secondary Structure 
TFIADLHIHSRFSIATSRDLDLASLWHWGQLKGIRVVGTGDCTHPVWLGELERDLVATE
CEEEEEEEECEEEEECCCCCCHHHHHCCCCCCCEEEEECCCCCCCEEHHHHHHHHHHCC
SGLFRLRHAPPQHLVPANCRAEVLFMPTAEISCIYRKGGRTRKVHCLVLLPDLQAAHRLN
CCCEEECCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEECCCHHHHHHH
LLLSRIGNLGSDGRPILKLDAKELLQMVLDAAPEALLIPAHAWTPHFSVFGSGSGFDSLA
HHHHHHCCCCCCCCEEEEECHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCHHHHH
ECFEELTPHVHAIETGLSSDPAMNWRISALDGITLISNSDAHSAAKLGREATVFRTDPSY
HHHHHHCCCCEEHHCCCCCCCCCCEEEEEECCEEEEECCCCHHHHHCCCCEEEEECCCCH
RGIRQGIIEGNGVASTIEFFPEQGKYHADGHRCCGVRLTPAQTIANGYRCPACGAKVTVG
HHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEECHHHHHHCCCCCCCCCCHHHHH
VLHRLELLADRPEGARPENAPPFQSLIPLLDLIGGALKVGTGTKKAQALYFHLLELIGNE
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCC
FHILRDAPVGLIEEAAGATLARGIGKMRLGEVEIDPGYDGRFGIVSISPLA
EEEEECCCCHHHHHHHCHHHHHCCCCEEECEEEECCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]